Wall clock time and date at job start Tue Mar 31 2020 22:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47191 * 2 1 4 4 C 1.53003 * 109.46957 * 119.99444 * 2 1 3 5 5 C 1.53004 * 109.46957 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47067 * 300.00293 * 5 4 2 7 7 C 1.53002 * 109.46969 * 59.99852 * 6 5 4 8 8 H 1.09003 * 109.46828 * 60.00019 * 7 6 5 9 9 C 1.50702 * 109.46939 * 179.97438 * 7 6 5 10 10 O 1.21276 * 119.99663 * 120.00118 * 9 7 6 11 11 N 1.34778 * 120.00288 * 300.00479 * 9 7 6 12 12 C 1.46496 * 119.99793 * 179.97438 * 11 9 7 13 13 H 1.08995 * 112.85426 * 23.80966 * 12 11 9 14 14 C 1.53781 * 113.61047 * 155.00222 * 12 11 9 15 15 C 1.53777 * 87.08725 * 89.11568 * 14 12 11 16 16 H 1.09001 * 113.61427 * 270.80588 * 15 14 12 17 17 N 1.46895 * 113.61799 * 139.97541 * 15 14 12 18 18 C 1.46904 * 111.00011 * 155.00014 * 17 15 14 19 19 C 1.50700 * 109.47192 * 180.02562 * 18 17 15 20 20 O 1.21293 * 119.99810 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99675 * 180.28082 * 19 18 17 22 22 C 1.37102 * 119.99634 * 179.72687 * 21 19 18 23 23 H 1.08002 * 119.99868 * 359.97438 * 22 21 19 24 24 C 1.38945 * 119.99860 * 179.97438 * 22 21 19 25 25 N 1.31414 * 119.99894 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99956 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47230 * 0.02562 * 26 24 22 28 28 H 1.48493 * 109.46892 * 120.00602 * 26 24 22 29 29 H 1.48503 * 109.46797 * 240.00208 * 26 24 22 30 30 C 1.53780 * 113.61551 * 252.49248 * 12 11 9 31 31 C 1.52994 * 109.47134 * 239.99551 * 2 1 3 32 32 H 1.08997 * 109.47107 * 300.00036 * 1 2 3 33 33 H 1.08993 * 109.47023 * 60.00176 * 1 2 3 34 34 H 1.08994 * 109.47061 * 180.02562 * 1 2 3 35 35 H 1.09003 * 109.46716 * 60.00265 * 4 2 1 36 36 H 1.09001 * 109.47203 * 300.00392 * 4 2 1 37 37 H 1.09002 * 109.46474 * 180.02562 * 5 4 2 38 38 H 1.08996 * 109.46556 * 60.00469 * 5 4 2 39 39 H 1.09003 * 109.46846 * 299.99961 * 6 5 4 40 40 H 1.08998 * 109.46720 * 180.02562 * 6 5 4 41 41 H 0.97003 * 119.99738 * 359.97438 * 11 9 7 42 42 H 1.09007 * 113.61837 * 334.56528 * 14 12 11 43 43 H 1.09002 * 113.69113 * 203.67913 * 14 12 11 44 44 H 1.00903 * 110.99867 * 31.05402 * 17 15 14 45 45 H 1.09009 * 109.46542 * 60.00300 * 18 17 15 46 46 H 1.08998 * 109.47050 * 300.00834 * 18 17 15 47 47 H 0.97001 * 120.00485 * 359.71840 * 21 19 18 48 48 H 0.97004 * 119.99542 * 179.97438 * 25 24 22 49 49 H 1.09003 * 113.61435 * 156.33577 * 30 12 11 50 50 H 1.09000 * 113.61526 * 25.44047 * 30 12 11 51 51 H 1.09007 * 109.46921 * 60.00072 * 31 2 1 52 52 H 1.08994 * 109.47495 * 300.00161 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5701 -0.7217 1.2490 6 6 4.0795 -1.4434 -0.0002 7 6 3.5695 -0.7222 -1.2495 8 1 3.9332 0.3054 -1.2497 9 6 4.0718 -1.4327 -2.4799 10 8 3.2836 -1.8936 -3.2781 11 7 5.3969 -1.5559 -2.6932 12 6 5.8851 -2.2471 -3.8891 13 1 5.1597 -2.2490 -4.7026 14 6 7.2944 -1.8091 -4.3214 15 6 7.8355 -2.9130 -3.3975 16 1 8.0067 -2.5805 -2.3737 17 7 8.9802 -3.6421 -3.9596 18 6 9.8066 -4.2261 -2.8947 19 6 10.9687 -4.9638 -3.5082 20 8 11.0962 -4.9992 -4.7139 21 7 11.8635 -5.5886 -2.7172 22 6 12.9176 -6.2645 -3.2756 23 1 13.0307 -6.2966 -4.3492 24 6 13.8403 -6.9082 -2.4602 25 7 13.7023 -6.8696 -1.1539 26 14 15.2761 -7.8297 -3.2209 27 1 15.2047 -7.7232 -4.7003 28 1 16.5521 -7.2389 -2.7436 29 1 15.2132 -9.2592 -2.8234 30 6 6.4900 -3.6304 -3.5972 31 6 2.0400 -0.7213 -1.2491 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3633 -1.0276 0.0005 35 1 1.6767 -1.7488 1.2493 36 1 1.6766 -0.2073 2.1393 37 1 3.9333 -1.2359 2.1389 38 1 3.9336 0.3058 1.2488 39 1 3.7158 -2.4710 0.0001 40 1 5.1695 -1.4442 -0.0001 41 1 6.0272 -1.1870 -2.0549 42 1 7.5570 -0.8017 -3.9983 43 1 7.5023 -1.9826 -5.3772 44 1 9.5308 -3.0448 -4.5580 45 1 9.2050 -4.9195 -2.3069 46 1 10.1810 -3.4321 -2.2486 47 1 11.7617 -5.5600 -1.7530 48 1 14.3463 -7.3193 -0.5847 49 1 6.4767 -4.3027 -4.4552 50 1 6.1031 -4.0935 -2.6895 51 1 1.6767 -0.2075 -2.1392 52 1 1.6767 -1.7489 -1.2491 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661467308.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:06 Heat of formation + Delta-G solvation = -82.887626 kcal Electronic energy + Delta-G solvation = -28746.736780 eV Core-core repulsion = 24745.210384 eV Total energy + Delta-G solvation = -4001.526395 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.76696 -39.35539 -38.22587 -37.74016 -34.61093 -33.87854 -33.29108 -32.20086 -31.28064 -31.14856 -27.01763 -26.73086 -25.79253 -24.80653 -23.94614 -22.62316 -22.12794 -20.71315 -20.08058 -19.54958 -19.11525 -17.88904 -17.34135 -16.48874 -16.08085 -15.65850 -15.37542 -15.20024 -15.10539 -14.78124 -14.63394 -14.40442 -14.32898 -13.97631 -13.80638 -13.55943 -13.37587 -13.03295 -12.80429 -12.51300 -12.41260 -12.22939 -12.04838 -11.98904 -11.84778 -11.58981 -11.57049 -11.39883 -11.35934 -11.06860 -10.92559 -10.85228 -10.61164 -10.52877 -10.48353 -10.34808 -10.22707 -9.86869 -9.52837 -9.22083 -8.45209 -8.08475 -7.96687 -6.42696 -3.83454 2.40358 2.88575 3.15832 3.26463 3.33904 3.89936 4.10819 4.19060 4.21084 4.26438 4.36718 4.40337 4.47745 4.66754 4.67135 4.76917 4.85483 4.89923 4.96740 5.01095 5.06613 5.14619 5.19401 5.25702 5.27423 5.33348 5.42227 5.44822 5.57317 5.59226 5.63203 5.70077 5.71705 5.76972 5.78508 5.80225 5.84805 5.87557 5.91033 5.94372 6.03850 6.08984 6.10154 6.25521 6.45832 7.25085 7.27643 7.54686 7.65182 8.01081 8.05877 8.60386 9.17212 9.53531 10.04908 10.75129 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021457 B = 0.001707 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.606133 B =16396.422194 C =17404.038990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.069 0.931 4 C -0.117 4.117 5 C -0.118 4.118 6 C -0.111 4.111 7 C -0.106 4.106 8 H 0.096 0.904 9 C 0.519 3.481 10 O -0.538 6.538 11 N -0.712 5.712 12 C 0.117 3.883 13 H 0.104 0.896 14 C -0.148 4.148 15 C 0.060 3.940 16 H 0.068 0.932 17 N -0.655 5.655 18 C 0.050 3.950 19 C 0.440 3.560 20 O -0.583 6.583 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.104 0.896 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.281 1.281 30 C -0.135 4.135 31 C -0.093 4.093 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.399 0.601 42 H 0.070 0.930 43 H 0.104 0.896 44 H 0.351 0.649 45 H 0.085 0.915 46 H 0.042 0.958 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.100 0.900 50 H 0.065 0.935 51 H 0.069 0.931 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.753 16.728 7.067 29.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 H 0.088 0.912 4 C -0.155 4.155 5 C -0.156 4.156 6 C -0.149 4.149 7 C -0.127 4.127 8 H 0.114 0.886 9 C 0.305 3.695 10 O -0.414 6.414 11 N -0.363 5.363 12 C 0.012 3.988 13 H 0.122 0.878 14 C -0.187 4.187 15 C -0.051 4.051 16 H 0.086 0.914 17 N -0.288 5.288 18 C -0.083 4.083 19 C 0.226 3.774 20 O -0.467 6.467 21 N -0.201 5.201 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.207 1.207 30 C -0.175 4.175 31 C -0.131 4.131 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.234 0.766 42 H 0.089 0.911 43 H 0.122 0.878 44 H 0.171 0.829 45 H 0.103 0.897 46 H 0.060 0.940 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.118 0.882 50 H 0.084 0.916 51 H 0.087 0.913 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.456 15.699 5.697 28.794 hybrid contribution 1.608 0.430 1.092 1.990 sum -21.848 16.129 6.789 27.993 Atomic orbital electron populations 1.21813 0.95028 1.01993 1.01632 1.21158 0.95687 0.99515 0.94729 0.91227 1.21638 0.95360 1.00962 0.97497 1.21527 0.95827 1.00772 0.97428 1.21543 1.00481 0.99865 0.93023 1.21356 0.98086 1.00454 0.92818 0.88615 1.20699 0.82062 0.79358 0.87338 1.90702 1.55245 1.48405 1.47077 1.45757 1.07079 1.58441 1.25038 1.21764 0.95422 0.93458 0.88192 0.87793 1.23606 0.94823 0.98508 1.01721 1.23096 0.91764 0.93540 0.96702 0.91388 1.60219 1.10961 1.38056 1.19526 1.21734 0.94629 0.98426 0.93470 1.19831 0.84960 0.84895 0.87726 1.90524 1.76718 1.65089 1.14393 1.41877 1.23194 1.46161 1.08861 1.19765 1.01404 1.27423 0.94267 0.87851 1.25265 0.99377 0.98125 0.95211 1.69624 1.37504 1.44311 1.02918 0.85795 0.80305 0.78836 0.79382 1.19202 1.20786 1.20734 1.23538 0.94692 0.96197 1.03025 1.21394 0.92165 1.01914 0.97663 0.92715 0.92607 0.92581 0.91790 0.91907 0.91456 0.91740 0.91189 0.91422 0.76618 0.91137 0.87806 0.82905 0.89689 0.93973 0.77489 0.91938 0.88156 0.91595 0.91254 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.19 37.16 0.34 -0.47 16 2 C -0.09 -0.54 2.72 -90.62 -0.25 -0.78 16 3 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 4 C -0.12 -0.64 5.20 -26.73 -0.14 -0.78 16 5 C -0.12 -0.61 5.92 -26.73 -0.16 -0.77 16 6 C -0.11 -0.68 5.10 -26.73 -0.14 -0.81 16 7 C -0.11 -0.74 2.52 -91.80 -0.23 -0.98 16 8 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 9 C 0.52 5.22 7.15 -10.98 -0.08 5.14 16 10 O -0.54 -7.60 15.58 5.56 0.09 -7.51 16 11 N -0.71 -6.10 5.15 -53.02 -0.27 -6.37 16 12 C 0.12 1.19 4.32 -67.12 -0.29 0.90 16 13 H 0.10 1.20 7.46 -51.93 -0.39 0.81 16 14 C -0.15 -1.41 7.40 -25.92 -0.19 -1.60 16 15 C 0.06 0.69 4.02 -66.90 -0.27 0.42 16 16 H 0.07 0.71 7.87 -51.93 -0.41 0.30 16 17 N -0.66 -10.24 6.18 -107.13 -0.66 -10.90 16 18 C 0.05 0.87 6.01 -4.97 -0.03 0.84 16 19 C 0.44 10.38 7.82 -10.98 -0.09 10.29 16 20 O -0.58 -15.85 15.78 5.55 0.09 -15.76 16 21 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 22 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 23 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 26 Si 0.93 21.05 29.55 -169.99 -5.02 16.02 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 30 C -0.13 -1.57 7.68 -25.92 -0.20 -1.77 16 31 C -0.09 -0.71 3.77 -26.76 -0.10 -0.81 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.36 7.57 -51.93 -0.39 -0.04 16 41 H 0.40 2.51 8.12 -40.82 -0.33 2.18 16 42 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 43 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.35 5.62 8.24 -39.29 -0.32 5.29 16 45 H 0.08 1.40 8.14 -51.92 -0.42 0.98 16 46 H 0.04 0.65 8.13 -51.93 -0.42 0.23 16 47 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 48 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 50 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 52 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 LS Contribution 415.02 15.07 6.25 6.25 Total: -1.00 -32.86 415.02 -10.20 -43.06 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -9.28 Total: 12.55 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -2.06 Total: 0.80 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.27 Total: -55.42 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: 0.17 Total: -23.28 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.86 -10.20 -43.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661467308.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.823 kcal (2) G-P(sol) polarization free energy of solvation -32.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds