Wall clock time and date at job start Tue Mar 31 2020 22:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46815 * 2 1 4 4 C 1.52999 * 109.46551 * 240.00554 * 2 1 3 5 5 C 1.53003 * 109.46551 * 180.02562 * 4 2 1 6 6 C 1.52994 * 109.47267 * 59.99876 * 5 4 2 7 7 C 1.52999 * 109.47436 * 299.99582 * 6 5 4 8 8 H 1.08997 * 109.47405 * 300.00588 * 7 6 5 9 9 C 1.50698 * 109.47575 * 179.97438 * 7 6 5 10 10 O 1.21280 * 119.99911 * 240.00218 * 9 7 6 11 11 N 1.34781 * 119.99576 * 60.00385 * 9 7 6 12 12 C 1.46504 * 119.99423 * 179.97438 * 11 9 7 13 13 H 1.08996 * 112.85065 * 336.19407 * 12 11 9 14 14 C 1.53949 * 113.53336 * 107.50710 * 12 11 9 15 15 C 1.53778 * 87.02264 * 89.18455 * 14 12 11 16 16 H 1.09000 * 113.61577 * 270.76848 * 15 14 12 17 17 N 1.46906 * 113.61497 * 139.94877 * 15 14 12 18 18 C 1.46901 * 110.99793 * 105.86631 * 17 15 14 19 19 C 1.50701 * 109.46921 * 179.97438 * 18 17 15 20 20 O 1.21294 * 119.99849 * 0.02562 * 19 18 17 21 21 N 1.34780 * 119.99795 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99707 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99704 * 359.97438 * 22 21 19 24 24 C 1.38941 * 119.99927 * 180.02562 * 22 21 19 25 25 N 1.31417 * 120.00180 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00273 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.46986 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47457 * 119.99901 * 26 24 22 29 29 H 1.48501 * 109.47104 * 239.99973 * 26 24 22 30 30 C 1.53777 * 87.17073 * 25.36008 * 15 14 12 31 31 C 1.52994 * 109.47267 * 120.00430 * 2 1 3 32 32 H 1.08995 * 109.47267 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46776 * 299.99893 * 1 2 3 34 34 H 1.09005 * 109.47338 * 59.99349 * 1 2 3 35 35 H 1.08995 * 109.47662 * 59.99823 * 4 2 1 36 36 H 1.09005 * 109.47109 * 299.99266 * 4 2 1 37 37 H 1.08995 * 109.47267 * 299.99667 * 5 4 2 38 38 H 1.09003 * 109.46776 * 179.97438 * 5 4 2 39 39 H 1.09001 * 109.47311 * 179.97438 * 6 5 4 40 40 H 1.09005 * 109.47555 * 60.00023 * 6 5 4 41 41 H 0.96996 * 119.99605 * 359.97438 * 11 9 7 42 42 H 1.08997 * 113.67038 * 334.65597 * 14 12 11 43 43 H 1.09001 * 113.61581 * 203.70454 * 14 12 11 44 44 H 1.00898 * 110.99995 * 229.81709 * 17 15 14 45 45 H 1.09002 * 109.47401 * 59.99808 * 18 17 15 46 46 H 1.09001 * 109.46874 * 299.99821 * 18 17 15 47 47 H 0.96995 * 120.00011 * 0.02562 * 21 19 18 48 48 H 0.97000 * 119.99884 * 180.02562 * 25 24 22 49 49 H 1.08997 * 113.61815 * 89.16083 * 30 15 14 50 50 H 1.09006 * 113.61201 * 219.97802 * 30 15 14 51 51 H 1.08995 * 109.47148 * 59.99718 * 31 2 1 52 52 H 1.09003 * 109.46959 * 299.99564 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5699 -0.7217 -1.2490 6 6 4.0794 -1.4434 0.0001 7 6 3.5696 -0.7222 1.2494 8 1 3.9332 0.3053 1.2497 9 6 4.0709 -1.4334 2.4798 10 8 3.2821 -1.8940 3.2777 11 7 5.3958 -1.5576 2.6936 12 6 5.8831 -2.2485 3.8900 13 1 5.1575 -2.2494 4.7033 14 6 6.4874 -3.6337 3.5967 15 6 7.8331 -2.9162 3.3993 16 1 8.0049 -2.5843 2.3754 17 7 8.9772 -3.6459 3.9621 18 6 9.7831 -4.2616 2.8994 19 6 10.9451 -4.9990 3.5135 20 8 11.0875 -5.0108 4.7180 21 7 11.8255 -5.6461 2.7244 22 6 12.8823 -6.3174 3.2831 23 1 13.0095 -6.3272 4.3556 24 6 13.7901 -6.9840 2.4696 25 7 13.6356 -6.9716 1.1646 26 14 15.2297 -7.8993 3.2309 27 1 15.1781 -7.7616 4.7085 28 1 15.1525 -9.3362 2.8641 29 1 16.5033 -7.3271 2.7251 30 6 7.2927 -1.8114 4.3225 31 6 2.0400 -0.7213 1.2491 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5140 -0.8900 35 1 1.6765 -0.2073 -2.1393 36 1 1.6766 -1.7489 -1.2493 37 1 3.9336 0.3058 -1.2488 38 1 3.9332 -1.2359 -2.1389 39 1 5.1694 -1.4442 0.0001 40 1 3.7157 -2.4710 -0.0001 41 1 6.0266 -1.1894 2.0552 42 1 6.1016 -4.0959 2.6880 43 1 6.4730 -4.3068 4.4539 44 1 9.5420 -3.0422 4.5405 45 1 10.1577 -3.4857 2.2316 46 1 9.1664 -4.9606 2.3344 47 1 11.7114 -5.6369 1.7612 48 1 14.2693 -7.4374 0.5968 49 1 7.4989 -1.9852 5.3785 50 1 7.5573 -0.8045 3.9996 51 1 1.6767 -1.7489 1.2491 52 1 1.6768 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661467309.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:09 Heat of formation + Delta-G solvation = -105.929388 kcal Electronic energy + Delta-G solvation = -28749.824363 eV Core-core repulsion = 24747.298802 eV Total energy + Delta-G solvation = -4002.525561 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.54958 -40.34686 -39.76633 -38.58656 -36.13704 -35.42321 -34.08154 -33.27890 -32.93029 -31.79349 -28.50425 -27.27546 -26.70396 -26.23544 -25.00838 -23.58234 -22.60935 -21.42505 -21.08598 -20.61141 -20.29432 -19.88914 -18.15151 -17.78091 -17.14055 -16.86624 -16.44514 -16.30788 -16.14269 -15.86689 -15.66140 -15.55252 -15.26408 -15.05523 -14.83729 -14.70704 -14.19929 -14.07017 -13.64203 -13.52813 -13.35736 -13.29861 -13.25650 -13.05400 -12.88567 -12.71305 -12.59124 -12.41017 -12.34499 -12.11637 -12.11387 -11.84784 -11.55686 -11.51029 -11.48573 -11.41173 -11.32978 -10.97107 -10.63481 -10.33635 -10.04625 -10.01654 -9.30477 -8.47261 -5.95965 1.36522 1.42044 1.56164 1.61634 2.05035 2.14814 2.29210 2.96359 3.20238 3.48361 3.56579 3.58888 3.66564 3.71699 3.77173 3.97611 4.12901 4.15816 4.18703 4.28018 4.30567 4.40859 4.47436 4.54070 4.56124 4.58895 4.59470 4.68003 4.79714 4.83566 4.86763 4.89989 4.99390 5.01619 5.08429 5.11662 5.14239 5.17224 5.21309 5.31092 5.35381 5.39825 5.40954 5.44063 5.58097 5.62531 5.93474 6.16877 6.44260 6.56123 6.59966 7.12468 7.26860 7.56077 8.11470 8.70306 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021422 B = 0.001708 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.769322 B =16385.868234 C =17391.100839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 H 0.081 0.919 4 C -0.117 4.117 5 C -0.115 4.115 6 C -0.109 4.109 7 C -0.098 4.098 8 H 0.121 0.879 9 C 0.515 3.485 10 O -0.585 6.585 11 N -0.699 5.699 12 C 0.125 3.875 13 H 0.087 0.913 14 C -0.139 4.139 15 C 0.062 3.938 16 H 0.090 0.910 17 N -0.672 5.672 18 C 0.066 3.934 19 C 0.436 3.564 20 O -0.624 6.624 21 N -0.573 5.573 22 C -0.335 4.335 23 H 0.078 0.922 24 C -0.013 4.013 25 N -0.920 5.920 26 Si 0.993 3.007 27 H -0.274 1.274 28 H -0.272 1.272 29 H -0.270 1.270 30 C -0.132 4.132 31 C -0.092 4.092 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.052 0.948 41 H 0.415 0.585 42 H 0.063 0.937 43 H 0.081 0.919 44 H 0.347 0.653 45 H 0.071 0.929 46 H 0.098 0.902 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.098 0.902 50 H 0.095 0.905 51 H 0.048 0.952 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.199 18.495 -8.948 30.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 H 0.100 0.900 4 C -0.155 4.155 5 C -0.152 4.152 6 C -0.146 4.146 7 C -0.119 4.119 8 H 0.138 0.862 9 C 0.304 3.696 10 O -0.465 6.465 11 N -0.350 5.350 12 C 0.018 3.982 13 H 0.105 0.895 14 C -0.179 4.179 15 C -0.048 4.048 16 H 0.108 0.892 17 N -0.305 5.305 18 C -0.066 4.066 19 C 0.224 3.776 20 O -0.511 6.511 21 N -0.211 5.211 22 C -0.464 4.464 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.817 3.183 27 H -0.199 1.199 28 H -0.197 1.197 29 H -0.195 1.195 30 C -0.170 4.170 31 C -0.130 4.130 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.252 0.748 42 H 0.082 0.918 43 H 0.100 0.900 44 H 0.167 0.833 45 H 0.089 0.911 46 H 0.116 0.884 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.117 0.883 50 H 0.113 0.887 51 H 0.066 0.934 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -22.895 17.507 -7.614 29.810 hybrid contribution 1.392 -0.111 -0.512 1.487 sum -21.503 17.397 -8.126 28.828 Atomic orbital electron populations 1.21825 0.95041 1.01631 1.02057 1.21131 0.95711 0.99831 0.93886 0.90029 1.21641 0.95837 1.00400 0.97585 1.21520 0.95333 1.01460 0.96901 1.21543 1.01314 0.98887 0.92897 1.21368 0.97469 1.01386 0.91664 0.86153 1.21289 0.82019 0.78716 0.87623 1.90688 1.56414 1.50515 1.48887 1.45642 1.07030 1.57689 1.24680 1.21600 0.95412 0.92808 0.88380 0.89484 1.23536 0.95425 0.96729 1.02166 1.23211 0.89673 0.93821 0.98105 0.89196 1.60185 1.11623 1.37818 1.20856 1.21578 0.92645 0.98703 0.93711 1.20948 0.85640 0.83762 0.87247 1.90493 1.77457 1.66627 1.16489 1.41942 1.23653 1.46170 1.09298 1.19710 1.03754 1.29316 0.93638 0.90383 1.26029 1.01326 0.98205 0.95665 1.69676 1.38709 1.43930 1.03776 0.84870 0.77426 0.77920 0.78113 1.19863 1.19693 1.19476 1.23479 0.93384 0.99031 1.01116 1.21353 0.92837 1.00635 0.98154 0.93378 0.92843 0.91613 0.90851 0.92886 0.90341 0.90959 0.89948 0.92917 0.74794 0.91828 0.90049 0.83271 0.91119 0.88395 0.76957 0.91294 0.88339 0.88694 0.93360 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.19 71.98 0.66 -0.87 16 2 C -0.09 -0.89 2.72 -10.79 -0.03 -0.92 16 3 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 4 C -0.12 -1.07 5.20 30.60 0.16 -0.91 16 5 C -0.11 -0.88 5.92 30.59 0.18 -0.70 16 6 C -0.11 -1.10 5.10 30.59 0.16 -0.94 16 7 C -0.10 -1.22 2.53 -11.56 -0.03 -1.25 16 8 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 9 C 0.52 9.95 7.15 87.66 0.63 10.58 16 10 O -0.59 -16.95 15.58 -3.03 -0.05 -17.00 16 11 N -0.70 -10.65 5.15 -439.76 -2.27 -12.92 16 12 C 0.12 2.39 4.33 45.57 0.20 2.59 16 13 H 0.09 2.03 7.46 -2.39 -0.02 2.01 16 14 C -0.14 -3.13 7.69 31.18 0.24 -2.89 16 15 C 0.06 1.28 3.99 45.44 0.18 1.46 16 16 H 0.09 1.52 7.88 -2.39 -0.02 1.50 16 17 N -0.67 -20.13 6.18 -492.84 -3.04 -23.18 16 18 C 0.07 2.19 6.02 85.56 0.52 2.70 16 19 C 0.44 20.63 7.82 87.66 0.69 21.31 16 20 O -0.62 -34.61 15.78 -3.07 -0.05 -34.66 16 21 N -0.57 -29.31 5.29 -306.98 -1.62 -30.93 16 22 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16 23 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 24 C -0.01 -0.67 5.50 84.92 0.47 -0.20 16 25 N -0.92 -49.36 13.05 21.66 0.28 -49.07 16 26 Si 0.99 42.87 29.55 68.60 2.03 44.90 16 27 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 29 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 30 C -0.13 -2.22 7.42 31.12 0.23 -1.99 16 31 C -0.09 -1.37 3.77 30.58 0.12 -1.25 16 32 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 35 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 37 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.08 0.60 7.57 -2.39 -0.02 0.58 16 40 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.41 3.83 8.12 -92.71 -0.75 3.07 16 42 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.35 10.78 8.26 -89.70 -0.74 10.04 16 45 H 0.07 1.97 8.13 -2.39 -0.02 1.95 16 46 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 47 H 0.40 19.14 7.90 -92.71 -0.73 18.41 16 48 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 49 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 50 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 51 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 52 H 0.06 0.97 8.10 -2.39 -0.02 0.95 16 Total: -1.00 -72.98 415.05 -0.85 -73.83 By element: Atomic # 1 Polarization: 41.85 SS G_CDS: -1.30 Total: 40.55 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 5.17 Total: 8.48 kcal Atomic # 7 Polarization: -109.44 SS G_CDS: -6.65 Total: -116.09 kcal Atomic # 8 Polarization: -51.57 SS G_CDS: -0.10 Total: -51.66 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -72.98 -0.85 -73.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661467309.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.103 kcal (2) G-P(sol) polarization free energy of solvation -72.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds