Wall clock time and date at job start Tue Mar 31 2020 22:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46998 * 2 1 4 4 C 1.52996 * 109.47031 * 120.00329 * 2 1 3 5 5 C 1.52996 * 109.47389 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47165 * 300.00229 * 5 4 2 7 7 C 1.53001 * 109.47251 * 59.99302 * 6 5 4 8 8 H 1.08998 * 109.47055 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.46762 * 60.00411 * 7 6 5 10 10 O 1.21277 * 120.00099 * 239.99755 * 9 7 6 11 11 N 1.34778 * 119.99998 * 60.00131 * 9 7 6 12 12 C 1.46500 * 119.99919 * 180.02562 * 11 9 7 13 13 H 1.09002 * 112.85132 * 25.33083 * 12 11 9 14 14 C 1.53781 * 113.61711 * 156.52821 * 12 11 9 15 15 C 1.53785 * 87.08277 * 89.19510 * 14 12 11 16 16 H 1.08995 * 113.61449 * 270.88726 * 15 14 12 17 17 N 1.46894 * 113.61215 * 140.06731 * 15 14 12 18 18 C 1.46897 * 111.00247 * 155.00542 * 17 15 14 19 19 C 1.50696 * 109.47611 * 179.97438 * 18 17 15 20 20 O 1.21295 * 119.99536 * 359.97438 * 19 18 17 21 21 N 1.34770 * 120.00055 * 179.97438 * 19 18 17 22 22 C 1.37103 * 120.00080 * 179.97438 * 21 19 18 23 23 H 1.07995 * 119.99705 * 0.02562 * 22 21 19 24 24 C 1.38946 * 120.00390 * 179.97438 * 22 21 19 25 25 N 1.31416 * 119.99650 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00306 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47201 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47382 * 120.00171 * 26 24 22 29 29 H 1.48495 * 109.47410 * 240.00227 * 26 24 22 30 30 C 1.53776 * 87.07661 * 25.43397 * 15 14 12 31 31 C 1.52998 * 109.47248 * 300.00348 * 7 6 5 32 32 H 1.09002 * 109.46996 * 299.99747 * 1 2 3 33 33 H 1.09002 * 109.47132 * 59.99472 * 1 2 3 34 34 H 1.09002 * 109.47725 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.47498 * 59.99976 * 4 2 1 36 36 H 1.09002 * 109.47167 * 299.99818 * 4 2 1 37 37 H 1.08993 * 109.47763 * 180.02562 * 5 4 2 38 38 H 1.09002 * 109.47481 * 59.99705 * 5 4 2 39 39 H 1.09006 * 109.46888 * 299.99781 * 6 5 4 40 40 H 1.09002 * 109.47266 * 180.02562 * 6 5 4 41 41 H 0.96998 * 120.00229 * 359.97438 * 11 9 7 42 42 H 1.08993 * 113.62030 * 203.74957 * 14 12 11 43 43 H 1.09006 * 113.61033 * 334.65409 * 14 12 11 44 44 H 1.00905 * 111.00111 * 278.95304 * 17 15 14 45 45 H 1.08997 * 109.46827 * 300.00042 * 18 17 15 46 46 H 1.09003 * 109.47318 * 59.99164 * 18 17 15 47 47 H 0.96999 * 120.00697 * 359.97438 * 21 19 18 48 48 H 0.97005 * 119.99585 * 180.02562 * 25 24 22 49 49 H 1.09003 * 113.61687 * 220.01420 * 30 15 14 50 50 H 1.09009 * 113.61565 * 89.11769 * 30 15 14 51 51 H 1.09002 * 109.47132 * 179.97438 * 31 7 6 52 52 H 1.08996 * 109.47440 * 300.00291 * 31 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5699 -0.7219 1.2489 6 6 4.0794 -1.4435 -0.0004 7 6 3.5694 -0.7222 -1.2496 8 1 3.9328 -1.2360 -2.1396 9 6 4.0723 0.6984 -1.2498 10 8 3.2846 1.6206 -1.2498 11 7 5.3975 0.9442 -1.2502 12 6 5.8863 2.3253 -1.2498 13 1 5.1718 3.0271 -0.8196 14 6 7.3104 2.4746 -0.6890 15 6 7.8150 2.2421 -2.1230 16 1 7.9790 1.1917 -2.3632 17 7 8.9517 3.0961 -2.4925 18 6 9.7506 2.4771 -3.5586 19 6 10.9044 3.3802 -3.9106 20 8 11.0469 4.4360 -3.3307 21 7 11.7779 3.0148 -4.8696 22 6 12.8274 3.8367 -5.1903 23 1 12.9543 4.7767 -4.6740 24 6 13.7283 3.4598 -6.1787 25 7 13.5741 2.3157 -6.8065 26 14 15.1585 4.5793 -6.6150 27 1 15.1087 5.7987 -5.7689 28 1 16.4378 3.8639 -6.3764 29 1 15.0666 4.9650 -8.0460 30 6 6.4567 2.7791 -2.6039 31 6 2.0394 -0.7216 -1.2493 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3634 -1.0276 -0.0005 35 1 1.6766 -1.7490 1.2492 36 1 1.6766 -0.2075 2.1392 37 1 3.9333 -1.2362 2.1386 38 1 3.9337 0.3056 1.2487 39 1 3.7157 -2.4710 -0.0002 40 1 5.1695 -1.4443 -0.0003 41 1 6.0275 0.2067 -1.2499 42 1 7.5267 3.4719 -0.3063 43 1 7.5911 1.6832 0.0062 44 1 8.6394 4.0167 -2.7629 45 1 10.1327 1.5160 -3.2147 46 1 9.1263 2.3257 -4.4392 47 1 11.6642 2.1703 -5.3331 48 1 14.2032 2.0524 -7.4963 49 1 6.0479 2.2339 -3.4547 50 1 6.4395 3.8599 -2.7448 51 1 1.6761 -0.2074 -2.1391 52 1 1.6757 -1.7491 -1.2490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661467310.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:16 Heat of formation + Delta-G solvation = -99.808653 kcal Electronic energy + Delta-G solvation = -29114.892644 eV Core-core repulsion = 25112.632498 eV Total energy + Delta-G solvation = -4002.260146 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -41.74387 -40.45148 -39.80018 -38.12420 -36.12681 -35.43360 -34.12883 -33.26697 -32.77388 -31.80650 -28.46856 -27.23099 -26.64467 -26.25435 -24.93944 -23.59468 -22.76926 -21.67660 -21.18563 -20.50465 -20.35909 -19.86709 -17.92236 -17.51788 -16.99405 -16.87310 -16.65839 -16.35306 -16.11614 -15.90091 -15.57167 -15.56440 -15.27704 -14.98875 -14.66610 -14.32567 -14.27873 -14.13186 -13.54751 -13.48472 -13.45561 -13.23712 -13.14466 -13.01575 -12.96026 -12.82600 -12.67340 -12.54599 -12.40356 -12.33244 -12.11621 -11.82980 -11.77264 -11.51988 -11.46980 -11.35309 -10.98860 -10.91141 -10.46885 -10.33357 -10.01674 -9.96899 -9.23739 -8.47270 -5.95910 1.36523 1.42057 1.56135 1.69451 2.05129 2.20126 2.29241 2.95124 3.20126 3.44551 3.61658 3.65665 3.71700 3.80278 3.81918 3.97209 4.07395 4.08766 4.26551 4.28667 4.32503 4.49571 4.51129 4.52299 4.57740 4.61799 4.64772 4.71938 4.80387 4.83444 4.86712 4.95145 4.96989 4.98799 5.03777 5.09634 5.10850 5.13943 5.19348 5.33612 5.34647 5.41032 5.41467 5.50215 5.59300 5.75319 5.93688 6.16682 6.39509 6.59955 6.61930 7.12534 7.34332 7.56167 8.11619 8.70266 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.032288 B = 0.001654 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.998023 B =16922.337231 C =17090.069841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 H 0.066 0.934 4 C -0.111 4.111 5 C -0.124 4.124 6 C -0.105 4.105 7 C -0.106 4.106 8 H 0.118 0.882 9 C 0.518 3.482 10 O -0.575 6.575 11 N -0.701 5.701 12 C 0.128 3.872 13 H 0.084 0.916 14 C -0.123 4.123 15 C 0.070 3.930 16 H 0.113 0.887 17 N -0.671 5.671 18 C 0.065 3.935 19 C 0.436 3.564 20 O -0.625 6.625 21 N -0.573 5.573 22 C -0.335 4.335 23 H 0.078 0.922 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.993 3.007 27 H -0.274 1.274 28 H -0.270 1.270 29 H -0.271 1.271 30 C -0.177 4.177 31 C -0.092 4.092 32 H 0.050 0.950 33 H 0.044 0.956 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.039 0.961 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.414 0.586 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.345 0.655 45 H 0.107 0.893 46 H 0.065 0.935 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.067 0.933 50 H 0.085 0.915 51 H 0.050 0.950 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.298 -14.357 12.814 30.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.127 4.127 3 H 0.085 0.915 4 C -0.148 4.148 5 C -0.161 4.161 6 C -0.143 4.143 7 C -0.127 4.127 8 H 0.136 0.864 9 C 0.307 3.693 10 O -0.454 6.454 11 N -0.353 5.353 12 C 0.022 3.978 13 H 0.102 0.898 14 C -0.161 4.161 15 C -0.041 4.041 16 H 0.131 0.869 17 N -0.302 5.302 18 C -0.067 4.067 19 C 0.223 3.777 20 O -0.512 6.512 21 N -0.210 5.210 22 C -0.464 4.464 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.817 3.183 27 H -0.199 1.199 28 H -0.195 1.195 29 H -0.196 1.196 30 C -0.217 4.217 31 C -0.129 4.129 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.058 0.942 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.251 0.749 42 H 0.109 0.891 43 H 0.107 0.893 44 H 0.164 0.836 45 H 0.125 0.875 46 H 0.083 0.917 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.086 0.914 50 H 0.103 0.897 51 H 0.068 0.932 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -23.222 -13.329 13.547 30.007 hybrid contribution 0.442 0.427 -1.480 1.602 sum -22.780 -12.902 12.067 28.827 Atomic orbital electron populations 1.21770 0.95183 1.01906 1.01076 1.21355 0.95685 1.00637 0.95006 0.91540 1.21579 0.95405 1.00904 0.96960 1.21574 0.95932 0.99843 0.98799 1.21566 1.01305 0.99928 0.91500 1.21461 0.97687 0.91375 1.02176 0.86449 1.21190 0.81870 0.92311 0.73955 1.90631 1.55979 1.47974 1.50848 1.45658 1.07138 1.07826 1.74668 1.21514 0.95482 0.84254 0.96580 0.89755 1.23364 0.92328 1.03812 0.96645 1.23239 0.86523 0.97689 0.96612 0.86927 1.60061 1.23048 1.05771 1.41310 1.21584 0.92992 0.97372 0.94747 1.20965 0.86153 0.88525 0.82017 1.90494 1.77390 1.27554 1.55716 1.41939 1.24292 1.20950 1.33853 1.19707 1.04552 1.02851 1.19315 0.90409 1.26028 1.01219 0.98239 0.95738 1.69677 1.38864 1.22075 1.25442 0.84871 0.77452 0.77879 0.78132 1.19891 1.19547 1.19610 1.24131 0.97791 1.01670 0.98151 1.21375 0.92621 1.01202 0.97739 0.93116 0.93683 0.91750 0.90732 0.92807 0.90560 0.94223 0.88808 0.90035 0.74933 0.89101 0.89308 0.83551 0.87458 0.91743 0.76928 0.91292 0.91396 0.89662 0.93161 0.89473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.19 71.98 0.66 -1.37 16 2 C -0.11 -1.74 2.43 -10.79 -0.03 -1.77 16 3 H 0.07 1.55 5.51 -2.39 -0.01 1.53 16 4 C -0.11 -1.39 5.20 30.59 0.16 -1.23 16 5 C -0.12 -1.43 5.70 30.59 0.17 -1.26 16 6 C -0.11 -0.83 5.35 30.60 0.16 -0.67 16 7 C -0.11 -1.22 3.01 -11.54 -0.03 -1.26 16 8 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 9 C 0.52 9.42 5.64 87.66 0.49 9.92 16 10 O -0.57 -15.45 13.28 -3.02 -0.04 -15.49 16 11 N -0.70 -10.36 5.16 -440.04 -2.27 -12.64 16 12 C 0.13 2.39 4.30 45.52 0.20 2.58 16 13 H 0.08 1.91 7.50 -2.39 -0.02 1.90 16 14 C -0.12 -2.24 7.62 31.12 0.24 -2.00 16 15 C 0.07 1.44 4.07 45.44 0.18 1.62 16 16 H 0.11 1.92 7.87 -2.39 -0.02 1.90 16 17 N -0.67 -20.15 6.24 -492.89 -3.08 -23.22 16 18 C 0.07 2.15 6.01 85.56 0.51 2.66 16 19 C 0.44 20.58 7.82 87.66 0.69 21.27 16 20 O -0.62 -34.72 15.78 -3.08 -0.05 -34.77 16 21 N -0.57 -29.24 5.29 -307.00 -1.62 -30.87 16 22 C -0.33 -19.04 9.68 84.04 0.81 -18.22 16 23 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 24 C -0.01 -0.67 5.50 84.92 0.47 -0.20 16 25 N -0.92 -49.28 13.05 21.66 0.28 -48.99 16 26 Si 0.99 42.87 29.55 68.60 2.03 44.90 16 27 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 28 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 29 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 30 C -0.18 -3.59 7.50 31.12 0.23 -3.36 16 31 C -0.09 -1.24 4.37 30.60 0.13 -1.11 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.04 0.64 7.22 -2.39 -0.02 0.62 16 39 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 40 H 0.08 0.44 7.57 -2.39 -0.02 0.42 16 41 H 0.41 3.84 8.12 -92.71 -0.75 3.09 16 42 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 44 H 0.34 11.23 7.90 -89.69 -0.71 10.52 16 45 H 0.11 3.09 8.13 -2.39 -0.02 3.07 16 46 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.40 19.09 7.90 -92.71 -0.73 18.36 16 48 H 0.28 13.87 8.31 -92.70 -0.77 13.10 16 49 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.08 1.87 7.83 -2.38 -0.02 1.85 16 51 H 0.05 0.85 8.10 -2.39 -0.02 0.84 16 52 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -72.09 408.02 -0.95 -73.05 By element: Atomic # 1 Polarization: 43.67 SS G_CDS: -1.26 Total: 42.41 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 5.06 Total: 5.62 kcal Atomic # 7 Polarization: -109.03 SS G_CDS: -6.69 Total: -115.72 kcal Atomic # 8 Polarization: -50.17 SS G_CDS: -0.09 Total: -50.25 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -72.09 -0.95 -73.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661467310.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.762 kcal (2) G-P(sol) polarization free energy of solvation -72.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds