Wall clock time and date at job start Tue Mar 31 2020 21:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.52539 * 2 1 4 4 C 1.53044 * 109.50227 * 239.91958 * 2 1 3 5 5 C 1.53033 * 109.53913 * 178.68141 * 4 2 1 6 6 C 1.52759 * 109.38371 * 61.24221 * 5 4 2 7 7 N 1.46929 * 109.00813 * 305.58485 * 6 5 4 8 8 C 1.34773 * 120.62954 * 233.58102 * 7 6 5 9 9 O 1.21345 * 119.99879 * 186.21231 * 8 7 6 10 10 C 1.49451 * 120.00086 * 6.21914 * 8 7 6 11 11 O 1.21348 * 120.00228 * 7.03535 * 10 8 7 12 12 N 1.34782 * 119.99882 * 187.04085 * 10 8 7 13 13 C 1.46497 * 119.99762 * 185.13517 * 12 10 8 14 14 C 1.53005 * 110.43304 * 56.35549 * 13 12 10 15 15 N 1.46508 * 109.46891 * 64.75207 * 14 13 12 16 16 C 1.36937 * 119.99988 * 174.95321 * 15 14 13 17 17 H 1.08000 * 119.99660 * 359.97438 * 16 15 14 18 18 C 1.38807 * 120.00101 * 180.02562 * 16 15 14 19 19 N 1.31615 * 120.00079 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00144 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47424 * 59.99434 * 20 18 16 22 22 H 1.48499 * 109.47389 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47244 * 299.99768 * 20 18 16 24 24 C 1.54884 * 110.48998 * 293.81823 * 13 12 10 25 25 C 1.55239 * 102.58665 * 279.18704 * 24 13 12 26 26 C 1.54265 * 104.22955 * 322.08520 * 25 24 13 27 27 C 1.53872 * 106.60185 * 23.61042 * 26 25 24 28 28 C 1.46920 * 118.73638 * 53.31129 * 7 6 5 29 29 H 1.09000 * 109.47650 * 299.92026 * 1 2 3 30 30 H 1.08997 * 109.47098 * 59.92212 * 1 2 3 31 31 H 1.09005 * 109.46923 * 179.91771 * 1 2 3 32 32 H 1.08999 * 109.45523 * 298.70478 * 4 2 1 33 33 H 1.09005 * 109.45648 * 58.65831 * 4 2 1 34 34 H 1.09003 * 109.49727 * 181.31227 * 5 4 2 35 35 H 1.08993 * 109.49891 * 301.41248 * 5 4 2 36 36 H 1.09004 * 109.51140 * 185.69827 * 6 5 4 37 37 H 1.09005 * 109.43219 * 65.41917 * 6 5 4 38 38 H 0.96993 * 119.99795 * 5.41196 * 12 10 8 39 39 H 1.09003 * 109.47110 * 184.74780 * 14 13 12 40 40 H 1.08996 * 109.47573 * 304.75253 * 14 13 12 41 41 H 0.97000 * 119.99865 * 354.94490 * 15 14 13 42 42 H 0.96999 * 120.00362 * 180.02562 * 19 18 16 43 43 H 1.08997 * 110.75982 * 37.57265 * 24 13 12 44 44 H 1.08993 * 110.75905 * 160.95039 * 24 13 12 45 45 H 1.08999 * 110.46992 * 203.39429 * 25 24 13 46 46 H 1.09000 * 110.47230 * 80.76993 * 25 24 13 47 47 H 1.09005 * 110.03387 * 264.32409 * 26 25 24 48 48 H 1.09003 * 110.07355 * 142.91976 * 26 25 24 49 49 H 1.09003 * 110.03020 * 240.71630 * 27 26 25 50 50 H 1.08999 * 110.07291 * 119.30561 * 27 26 25 51 51 H 1.08994 * 109.59105 * 66.43110 * 28 7 6 52 52 H 1.09005 * 109.58838 * 186.71403 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 3.5708 -0.6949 -1.2659 6 6 4.1055 -1.4215 -0.0332 7 7 3.5046 -0.8290 1.1696 8 6 4.2811 -0.3856 2.1780 9 8 3.7734 -0.0027 3.2115 10 6 5.7674 -0.3652 2.0232 11 8 6.2693 -0.6256 0.9494 12 7 6.5505 -0.0578 3.0762 13 6 7.9988 0.0726 2.8986 14 6 8.3135 1.1133 1.8221 15 7 7.8639 2.4329 2.2724 16 6 8.1329 3.5426 1.5166 17 1 8.6768 3.4450 0.5886 18 6 7.7075 4.7930 1.9435 19 7 7.0451 4.9120 3.0745 20 14 8.0750 6.3069 0.9127 21 1 7.4549 6.1554 -0.4281 22 1 7.5173 7.5092 1.5825 23 1 9.5446 6.4596 0.7639 24 6 8.6250 -1.2952 2.5298 25 6 8.7478 -1.9944 3.9103 26 6 9.1502 -0.8602 4.8754 27 6 8.6740 0.4540 4.2322 28 6 2.0413 -0.7238 1.2496 29 1 -0.3634 0.5126 0.8907 30 1 -0.3633 0.5150 -0.8893 31 1 -0.3633 -1.0277 -0.0015 32 1 1.6967 -1.7572 -1.2353 33 1 1.6581 -0.2245 -2.1389 34 1 3.9335 -1.1897 -2.1670 35 1 3.9158 0.3389 -1.2540 36 1 5.1895 -1.3159 0.0100 37 1 3.8412 -2.4774 -0.0915 38 1 6.1555 0.0732 3.9523 39 1 9.3884 1.1372 1.6431 40 1 7.7972 0.8490 0.8993 41 1 7.3756 2.5206 3.1060 42 1 6.7474 5.7857 3.3727 43 1 7.9656 -1.8559 1.8673 44 1 9.6069 -1.1607 2.0760 45 1 9.5205 -2.7626 3.8811 46 1 7.7911 -2.4252 4.2059 47 1 10.2329 -0.8435 5.0012 48 1 8.6646 -1.0007 5.8411 49 1 9.5255 1.1085 4.0458 50 1 7.9568 0.9516 4.8849 51 1 1.6052 -1.7215 1.2980 52 1 1.7636 -0.1601 2.1403 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665951442.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:39 Heat of formation + Delta-G solvation = -55.835229 kcal Electronic energy + Delta-G solvation = -31530.093251 eV Core-core repulsion = 27529.739936 eV Total energy + Delta-G solvation = -4000.353315 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.94854 -39.48437 -37.73968 -37.44772 -34.33686 -33.94711 -32.97482 -31.88792 -31.06877 -28.65148 -28.26960 -27.20050 -26.05770 -24.54778 -23.38175 -22.34014 -22.27311 -20.88606 -20.12227 -19.38400 -19.18855 -17.43172 -17.13536 -16.67679 -15.85320 -15.67046 -15.33485 -15.10242 -14.94460 -14.62694 -14.37884 -14.26715 -14.09130 -13.78567 -13.40096 -13.19102 -13.00510 -12.83744 -12.75338 -12.60567 -12.33534 -12.01780 -11.81265 -11.45767 -11.42036 -11.28088 -11.12719 -11.03818 -10.94029 -10.87198 -10.78659 -10.70825 -10.54606 -10.45899 -10.42205 -10.30095 -10.07133 -9.66403 -8.92801 -8.83109 -8.66329 -8.57500 -6.83913 -5.70871 -2.98654 1.67890 2.52008 3.45826 3.47079 3.51415 3.52436 3.68361 4.48075 4.58400 4.65385 4.68606 4.75659 4.79717 4.81171 5.02140 5.03054 5.23847 5.33229 5.40807 5.49868 5.51021 5.58500 5.59163 5.63240 5.64151 5.66241 5.68225 5.76453 5.83396 5.88064 5.90460 5.97088 6.01387 6.01930 6.08273 6.13548 6.25163 6.26675 6.33794 6.34207 6.41159 6.49463 6.56283 6.58972 6.87137 7.05910 7.20554 7.55200 7.74884 7.98873 8.30611 8.47614 9.58956 10.16508 10.51888 11.51846 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008132 B = 0.004535 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3442.505150 B = 6173.278405 C = 8439.062861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 H 0.077 0.923 4 C -0.115 4.115 5 C -0.132 4.132 6 C 0.048 3.952 7 N -0.582 5.582 8 C 0.509 3.491 9 O -0.522 6.522 10 C 0.520 3.480 11 O -0.507 6.507 12 N -0.671 5.671 13 C 0.165 3.835 14 C 0.143 3.857 15 N -0.728 5.728 16 C -0.236 4.236 17 H 0.068 0.932 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.905 3.095 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.286 1.286 24 C -0.125 4.125 25 C -0.123 4.123 26 C -0.125 4.125 27 C -0.119 4.119 28 C 0.114 3.886 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.161 0.839 37 H 0.057 0.943 38 H 0.409 0.591 39 H 0.031 0.969 40 H 0.043 0.957 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.061 0.939 49 H 0.089 0.911 50 H 0.073 0.927 51 H 0.068 0.932 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.469 -17.730 -2.602 19.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.128 4.128 3 H 0.096 0.904 4 C -0.153 4.153 5 C -0.170 4.170 6 C -0.073 4.073 7 N -0.316 5.316 8 C 0.292 3.708 9 O -0.398 6.398 10 C 0.302 3.698 11 O -0.385 6.385 12 N -0.322 5.322 13 C 0.079 3.921 14 C 0.015 3.985 15 N -0.373 5.373 16 C -0.367 4.367 17 H 0.086 0.914 18 C -0.209 4.209 19 N -0.582 5.582 20 Si 0.736 3.264 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.213 1.213 24 C -0.164 4.164 25 C -0.161 4.161 26 C -0.163 4.163 27 C -0.157 4.157 28 C -0.009 4.009 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.177 0.823 37 H 0.076 0.924 38 H 0.245 0.755 39 H 0.048 0.952 40 H 0.060 0.940 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.080 0.920 49 H 0.107 0.893 50 H 0.091 0.909 51 H 0.086 0.914 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.302 -17.567 -2.901 18.887 hybrid contribution -0.432 1.158 0.024 1.236 sum -6.735 -16.409 -2.877 17.969 Atomic orbital electron populations 1.21753 0.94388 1.01833 1.02148 1.21520 0.95865 1.00557 0.94897 0.90450 1.21619 0.95986 1.00324 0.97344 1.21784 0.95184 1.02105 0.97961 1.23201 1.05817 0.95533 0.82723 1.47908 1.06367 1.58996 1.18323 1.20237 0.88317 0.78466 0.83788 1.90741 1.75158 1.46393 1.27463 1.19871 0.87316 0.77895 0.84745 1.90225 1.74238 1.48413 1.25654 1.45757 1.07385 1.67707 1.11316 1.21614 0.77801 0.95640 0.97009 1.21098 0.97424 0.85016 0.94949 1.42264 1.67832 1.00733 1.26435 1.19162 1.29402 0.85740 1.02407 0.91371 1.24696 1.01162 0.97466 0.97587 1.69643 1.43356 1.23140 1.22062 0.86298 0.77737 0.82902 0.79435 1.21413 1.21763 1.21312 1.22883 1.01332 0.95142 0.97026 1.22421 1.00886 0.97505 0.95278 1.22189 1.00965 0.94647 0.98511 1.22372 1.01457 0.97320 0.94591 1.21746 0.79113 1.00778 0.99241 0.92346 0.92282 0.92608 0.92040 0.91820 0.90763 0.91203 0.82282 0.92436 0.75493 0.95156 0.93953 0.78344 0.93568 0.90305 0.90276 0.91862 0.92048 0.91756 0.92026 0.89253 0.90858 0.91407 0.88975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.20 37.15 0.34 -0.89 16 2 C -0.11 -1.18 2.87 -90.50 -0.26 -1.44 16 3 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.12 -1.13 5.17 -26.69 -0.14 -1.27 16 5 C -0.13 -1.51 6.06 -26.84 -0.16 -1.67 16 6 C 0.05 0.60 6.25 -3.93 -0.02 0.57 16 7 N -0.58 -8.26 2.98 -173.54 -0.52 -8.77 16 8 C 0.51 8.59 7.75 -11.59 -0.09 8.50 16 9 O -0.52 -9.84 15.96 5.50 0.09 -9.76 16 10 C 0.52 8.86 7.13 -11.58 -0.08 8.78 16 11 O -0.51 -8.83 9.74 5.50 0.05 -8.78 16 12 N -0.67 -10.92 4.97 -46.50 -0.23 -11.15 16 13 C 0.16 2.66 0.39 -130.16 -0.05 2.60 16 14 C 0.14 2.95 4.93 -4.03 -0.02 2.93 16 15 N -0.73 -18.46 5.26 -59.90 -0.31 -18.77 16 16 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 19 N -0.93 -28.59 13.06 55.49 0.72 -27.87 16 20 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 24 C -0.13 -1.68 5.75 -24.55 -0.14 -1.83 16 25 C -0.12 -1.39 6.80 -24.88 -0.17 -1.56 16 26 C -0.13 -1.47 6.80 -25.62 -0.17 -1.64 16 27 C -0.12 -1.79 5.32 -25.62 -0.14 -1.92 16 28 C 0.11 1.38 5.70 -3.71 -0.02 1.36 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.16 2.29 3.77 -56.80 -0.21 2.08 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.41 6.39 7.81 -40.82 -0.32 6.07 16 39 H 0.03 0.63 8.08 -51.93 -0.42 0.21 16 40 H 0.04 0.95 6.05 -51.93 -0.31 0.64 16 41 H 0.38 10.19 7.24 -40.82 -0.30 9.89 16 42 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.08 1.11 6.54 -51.93 -0.34 0.77 16 44 H 0.08 1.03 8.01 -51.93 -0.42 0.61 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.09 1.48 7.84 -51.93 -0.41 1.07 16 50 H 0.07 1.15 7.78 -51.93 -0.40 0.74 16 51 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 52 H 0.09 1.24 7.05 -51.93 -0.37 0.88 16 LS Contribution 398.74 15.07 6.01 6.01 Total: -1.00 -32.03 398.74 -9.55 -41.58 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: -8.96 Total: 14.46 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -1.38 Total: 5.18 kcal Atomic # 7 Polarization: -66.23 SS G_CDS: -0.34 Total: -66.56 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.14 Total: -18.54 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.03 -9.55 -41.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665951442.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.258 kcal (2) G-P(sol) polarization free energy of solvation -32.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds