Wall clock time and date at job start Tue Mar 31 2020 21:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.52539 * 2 1 4 4 C 1.53044 * 109.50227 * 239.91958 * 2 1 3 5 5 C 1.53033 * 109.53913 * 178.68141 * 4 2 1 6 6 C 1.52759 * 109.38371 * 61.24221 * 5 4 2 7 7 N 1.46929 * 109.00813 * 305.58485 * 6 5 4 8 8 C 1.34773 * 120.62954 * 233.58102 * 7 6 5 9 9 O 1.21345 * 119.99879 * 186.21231 * 8 7 6 10 10 C 1.49451 * 120.00086 * 6.21914 * 8 7 6 11 11 O 1.21348 * 120.00228 * 7.03535 * 10 8 7 12 12 N 1.34782 * 119.99882 * 187.04085 * 10 8 7 13 13 C 1.46497 * 119.99762 * 185.13517 * 12 10 8 14 14 C 1.53005 * 110.43304 * 56.35549 * 13 12 10 15 15 N 1.46508 * 109.46891 * 64.75207 * 14 13 12 16 16 C 1.36937 * 119.99988 * 174.95321 * 15 14 13 17 17 H 1.08000 * 119.99660 * 359.97438 * 16 15 14 18 18 C 1.38807 * 120.00101 * 180.02562 * 16 15 14 19 19 N 1.31615 * 120.00079 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00144 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47424 * 59.99434 * 20 18 16 22 22 H 1.48499 * 109.47389 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47244 * 299.99768 * 20 18 16 24 24 C 1.54884 * 110.48998 * 293.81823 * 13 12 10 25 25 C 1.55239 * 102.58665 * 279.18704 * 24 13 12 26 26 C 1.54265 * 104.22955 * 322.08520 * 25 24 13 27 27 C 1.53872 * 106.60185 * 23.61042 * 26 25 24 28 28 C 1.46920 * 118.73638 * 53.31129 * 7 6 5 29 29 H 1.09000 * 109.47650 * 299.92026 * 1 2 3 30 30 H 1.08997 * 109.47098 * 59.92212 * 1 2 3 31 31 H 1.09005 * 109.46923 * 179.91771 * 1 2 3 32 32 H 1.08999 * 109.45523 * 298.70478 * 4 2 1 33 33 H 1.09005 * 109.45648 * 58.65831 * 4 2 1 34 34 H 1.09003 * 109.49727 * 181.31227 * 5 4 2 35 35 H 1.08993 * 109.49891 * 301.41248 * 5 4 2 36 36 H 1.09004 * 109.51140 * 185.69827 * 6 5 4 37 37 H 1.09005 * 109.43219 * 65.41917 * 6 5 4 38 38 H 0.96993 * 119.99795 * 5.41196 * 12 10 8 39 39 H 1.09003 * 109.47110 * 184.74780 * 14 13 12 40 40 H 1.08996 * 109.47573 * 304.75253 * 14 13 12 41 41 H 0.97000 * 119.99865 * 354.94490 * 15 14 13 42 42 H 0.96999 * 120.00362 * 180.02562 * 19 18 16 43 43 H 1.08997 * 110.75982 * 37.57265 * 24 13 12 44 44 H 1.08993 * 110.75905 * 160.95039 * 24 13 12 45 45 H 1.08999 * 110.46992 * 203.39429 * 25 24 13 46 46 H 1.09000 * 110.47230 * 80.76993 * 25 24 13 47 47 H 1.09005 * 110.03387 * 264.32409 * 26 25 24 48 48 H 1.09003 * 110.07355 * 142.91976 * 26 25 24 49 49 H 1.09003 * 110.03020 * 240.71630 * 27 26 25 50 50 H 1.08999 * 110.07291 * 119.30561 * 27 26 25 51 51 H 1.08994 * 109.59105 * 66.43110 * 28 7 6 52 52 H 1.09005 * 109.58838 * 186.71403 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 3.5708 -0.6949 -1.2659 6 6 4.1055 -1.4215 -0.0332 7 7 3.5046 -0.8290 1.1696 8 6 4.2811 -0.3856 2.1780 9 8 3.7734 -0.0027 3.2115 10 6 5.7674 -0.3652 2.0232 11 8 6.2693 -0.6256 0.9494 12 7 6.5505 -0.0578 3.0762 13 6 7.9988 0.0726 2.8986 14 6 8.3135 1.1133 1.8221 15 7 7.8639 2.4329 2.2724 16 6 8.1329 3.5426 1.5166 17 1 8.6768 3.4450 0.5886 18 6 7.7075 4.7930 1.9435 19 7 7.0451 4.9120 3.0745 20 14 8.0750 6.3069 0.9127 21 1 7.4549 6.1554 -0.4281 22 1 7.5173 7.5092 1.5825 23 1 9.5446 6.4596 0.7639 24 6 8.6250 -1.2952 2.5298 25 6 8.7478 -1.9944 3.9103 26 6 9.1502 -0.8602 4.8754 27 6 8.6740 0.4540 4.2322 28 6 2.0413 -0.7238 1.2496 29 1 -0.3634 0.5126 0.8907 30 1 -0.3633 0.5150 -0.8893 31 1 -0.3633 -1.0277 -0.0015 32 1 1.6967 -1.7572 -1.2353 33 1 1.6581 -0.2245 -2.1389 34 1 3.9335 -1.1897 -2.1670 35 1 3.9158 0.3389 -1.2540 36 1 5.1895 -1.3159 0.0100 37 1 3.8412 -2.4774 -0.0915 38 1 6.1555 0.0732 3.9523 39 1 9.3884 1.1372 1.6431 40 1 7.7972 0.8490 0.8993 41 1 7.3756 2.5206 3.1060 42 1 6.7474 5.7857 3.3727 43 1 7.9656 -1.8559 1.8673 44 1 9.6069 -1.1607 2.0760 45 1 9.5205 -2.7626 3.8811 46 1 7.7911 -2.4252 4.2059 47 1 10.2329 -0.8435 5.0012 48 1 8.6646 -1.0007 5.8411 49 1 9.5255 1.1085 4.0458 50 1 7.9568 0.9516 4.8849 51 1 1.6052 -1.7215 1.2980 52 1 1.7636 -0.1601 2.1403 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665951442.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:38 Heat of formation + Delta-G solvation = -76.807127 kcal Electronic energy + Delta-G solvation = -31531.002661 eV Core-core repulsion = 27529.739936 eV Total energy + Delta-G solvation = -4001.262725 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.22816 -40.69597 -38.85351 -38.75873 -36.19013 -35.08017 -34.24111 -33.06311 -32.85079 -29.96687 -29.61829 -28.19268 -27.12601 -26.31861 -24.59969 -24.06369 -23.26889 -22.01170 -21.12522 -20.58802 -20.45859 -19.21066 -18.64993 -17.97368 -17.15184 -16.96776 -16.59843 -16.44299 -16.17619 -16.09826 -15.55067 -15.47046 -15.23563 -15.10871 -14.99482 -14.52539 -14.37414 -14.11575 -13.89004 -13.71411 -13.54897 -13.19421 -13.16202 -12.82079 -12.76448 -12.48786 -12.45920 -12.40531 -12.23308 -12.06286 -12.04756 -11.90377 -11.85153 -11.82219 -11.67107 -11.62160 -11.35564 -11.27980 -10.96767 -10.19022 -9.93989 -9.78330 -8.96599 -7.95681 -5.23438 0.34043 1.29119 1.43239 1.46409 1.52504 2.13411 2.46234 2.54124 3.24117 3.38615 3.50167 3.67932 3.73063 3.80981 3.88482 3.92687 4.09395 4.19545 4.30292 4.35846 4.41124 4.49467 4.56117 4.56989 4.60941 4.67160 4.71227 4.75801 4.83192 4.83626 4.85811 4.92261 5.01070 5.04615 5.11493 5.12213 5.14808 5.17719 5.25577 5.27403 5.28316 5.34040 5.41312 5.46189 5.46369 5.50928 5.70044 5.98816 6.24283 6.27037 6.71164 6.97865 7.32633 8.07907 8.33026 9.27255 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008132 B = 0.004535 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3442.505150 B = 6173.278405 C = 8439.062861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 H 0.045 0.955 4 C -0.109 4.109 5 C -0.130 4.130 6 C 0.045 3.955 7 N -0.576 5.576 8 C 0.500 3.500 9 O -0.552 6.552 10 C 0.514 3.486 11 O -0.515 6.515 12 N -0.669 5.669 13 C 0.167 3.833 14 C 0.144 3.856 15 N -0.735 5.735 16 C -0.244 4.244 17 H 0.070 0.930 18 C -0.072 4.072 19 N -0.967 5.967 20 Si 0.970 3.030 21 H -0.283 1.283 22 H -0.294 1.294 23 H -0.274 1.274 24 C -0.119 4.119 25 C -0.113 4.113 26 C -0.116 4.116 27 C -0.117 4.117 28 C 0.109 3.891 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.036 0.964 36 H 0.142 0.858 37 H 0.087 0.913 38 H 0.411 0.589 39 H 0.034 0.966 40 H 0.025 0.975 41 H 0.374 0.626 42 H 0.250 0.750 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.064 0.936 47 H 0.078 0.922 48 H 0.075 0.925 49 H 0.070 0.930 50 H 0.060 0.940 51 H 0.097 0.903 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.658 -19.851 -3.559 21.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.127 4.127 3 H 0.064 0.936 4 C -0.146 4.146 5 C -0.169 4.169 6 C -0.075 4.075 7 N -0.308 5.308 8 C 0.283 3.717 9 O -0.431 6.431 10 C 0.296 3.704 11 O -0.394 6.394 12 N -0.320 5.320 13 C 0.081 3.919 14 C 0.016 3.984 15 N -0.378 5.378 16 C -0.376 4.376 17 H 0.088 0.912 18 C -0.264 4.264 19 N -0.618 5.618 20 Si 0.799 3.201 21 H -0.210 1.210 22 H -0.220 1.220 23 H -0.200 1.200 24 C -0.157 4.157 25 C -0.151 4.151 26 C -0.154 4.154 27 C -0.155 4.155 28 C -0.012 4.012 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.055 0.945 36 H 0.159 0.841 37 H 0.105 0.895 38 H 0.247 0.753 39 H 0.051 0.949 40 H 0.043 0.957 41 H 0.206 0.794 42 H 0.059 0.941 43 H 0.091 0.909 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.083 0.917 47 H 0.097 0.903 48 H 0.094 0.906 49 H 0.088 0.912 50 H 0.079 0.921 51 H 0.115 0.885 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.477 -19.731 -3.907 21.131 hybrid contribution -0.375 1.787 0.235 1.841 sum -6.852 -17.944 -3.672 19.555 Atomic orbital electron populations 1.21716 0.92261 1.03183 1.02372 1.21503 0.97577 0.98709 0.94902 0.93638 1.21605 0.94416 1.01632 0.96986 1.21776 0.96656 1.00153 0.98269 1.23236 1.04755 0.97120 0.82346 1.48101 1.07252 1.57498 1.17963 1.20297 0.88419 0.78805 0.84212 1.90717 1.75488 1.48218 1.28683 1.20054 0.87664 0.77917 0.84794 1.90253 1.74580 1.48754 1.25774 1.45775 1.07463 1.67372 1.11360 1.21582 0.78075 0.95934 0.96278 1.21184 0.96984 0.84289 0.95899 1.42391 1.67690 1.01912 1.25803 1.19546 1.28596 0.86924 1.02531 0.91185 1.25490 1.01661 1.00358 0.98914 1.69805 1.44839 1.23367 1.23762 0.85267 0.78000 0.79057 0.77782 1.20958 1.22047 1.20038 1.22845 1.01060 0.93268 0.98561 1.22384 1.01972 0.97563 0.93133 1.22146 1.01906 0.92475 0.98847 1.22321 1.00268 0.98993 0.93944 1.21958 0.77822 1.02259 0.99199 0.92794 0.91476 0.90633 0.89676 0.90731 0.88638 0.94490 0.84132 0.89528 0.75282 0.94855 0.95695 0.79391 0.94102 0.90897 0.89649 0.89364 0.91727 0.90321 0.90641 0.91160 0.92109 0.88523 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.20 71.98 0.66 -1.44 16 2 C -0.11 -2.24 2.87 -10.72 -0.03 -2.27 16 3 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 4 C -0.11 -1.90 5.17 30.62 0.16 -1.74 16 5 C -0.13 -2.84 6.06 30.53 0.19 -2.66 16 6 C 0.05 1.09 6.25 86.22 0.54 1.63 16 7 N -0.58 -16.32 2.98 -821.31 -2.45 -18.76 16 8 C 0.50 17.43 7.75 87.27 0.68 18.10 16 9 O -0.55 -21.74 15.96 -3.23 -0.05 -21.79 16 10 C 0.51 18.07 7.13 87.27 0.62 18.70 16 11 O -0.51 -18.42 9.74 -3.24 -0.03 -18.45 16 12 N -0.67 -22.43 4.97 -419.39 -2.08 -24.51 16 13 C 0.17 5.44 0.39 4.68 0.00 5.44 16 14 C 0.14 6.09 4.93 86.38 0.43 6.51 16 15 N -0.74 -38.51 5.26 -343.43 -1.81 -40.32 16 16 C -0.24 -14.17 9.99 84.03 0.84 -13.33 16 17 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 18 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 19 N -0.97 -60.82 13.06 21.65 0.28 -60.54 16 20 Si 0.97 47.73 29.55 68.60 2.03 49.75 16 21 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 22 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 23 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 24 C -0.12 -3.06 5.75 32.01 0.18 -2.88 16 25 C -0.11 -2.27 6.80 31.79 0.22 -2.05 16 26 C -0.12 -2.48 6.80 31.32 0.21 -2.27 16 27 C -0.12 -3.52 5.32 31.32 0.17 -3.35 16 28 C 0.11 2.57 5.70 86.37 0.49 3.07 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.14 4.05 3.77 -79.61 -0.30 3.75 16 37 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.41 13.37 7.81 -92.71 -0.72 12.65 16 39 H 0.03 1.40 8.08 -2.39 -0.02 1.38 16 40 H 0.03 1.16 6.05 -2.39 -0.01 1.15 16 41 H 0.37 20.74 7.24 -92.71 -0.67 20.07 16 42 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 43 H 0.07 1.99 6.54 -2.39 -0.02 1.98 16 44 H 0.08 2.10 8.01 -2.39 -0.02 2.08 16 45 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 47 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 48 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.07 2.37 7.84 -2.39 -0.02 2.35 16 50 H 0.06 1.96 7.78 -2.39 -0.02 1.94 16 51 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 52 H 0.07 2.02 7.05 -2.38 -0.02 2.00 16 Total: -1.00 -71.31 398.74 0.95 -70.36 By element: Atomic # 1 Polarization: 47.35 SS G_CDS: -0.76 Total: 46.59 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 5.82 Total: 17.66 kcal Atomic # 7 Polarization: -138.08 SS G_CDS: -6.05 Total: -144.13 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -0.08 Total: -40.24 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.75 kcal Total: -71.31 0.95 -70.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665951442.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.447 kcal (2) G-P(sol) polarization free energy of solvation -71.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds