Wall clock time and date at job start Tue Mar 31 2020 20:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50701 * 109.47166 * 2 1 4 4 O 1.21274 * 120.00143 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99838 * 180.02562 * 3 2 1 6 6 C 1.46502 * 119.99603 * 179.97438 * 5 3 2 7 7 H 1.08996 * 109.47484 * 35.00040 * 6 5 3 8 8 C 1.52998 * 109.47239 * 274.99826 * 6 5 3 9 9 C 1.50705 * 109.46840 * 155.00160 * 6 5 3 10 10 O 1.21274 * 120.00197 * 24.94036 * 9 6 5 11 11 N 1.34780 * 119.99576 * 204.94820 * 9 6 5 12 12 C 1.46929 * 120.70527 * 354.80997 * 11 9 6 13 13 C 1.53187 * 108.91783 * 125.81063 * 12 11 9 14 14 C 1.53158 * 109.27178 * 55.24111 * 13 12 11 15 15 C 1.52235 * 109.62761 * 299.83516 * 14 13 12 16 16 C 1.54499 * 110.25052 * 297.03886 * 15 14 13 17 17 C 1.55023 * 101.52334 * 276.23012 * 16 15 14 18 18 N 1.47478 * 104.90573 * 323.64463 * 17 16 15 19 19 C 1.36940 * 125.66298 * 204.02694 * 18 17 16 20 20 H 1.08003 * 119.99955 * 179.97438 * 19 18 17 21 21 C 1.38807 * 119.99964 * 359.97428 * 19 18 17 22 22 N 1.31615 * 120.00065 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99833 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47162 * 90.00105 * 23 21 19 25 25 H 1.48506 * 109.47130 * 209.99854 * 23 21 19 26 26 H 1.48497 * 109.47328 * 329.99637 * 23 21 19 27 27 C 1.47188 * 108.67450 * 24.00471 * 18 17 16 28 28 C 1.47085 * 120.69723 * 174.79456 * 11 9 6 29 29 H 1.09004 * 109.47134 * 180.02562 * 1 2 3 30 30 H 1.09011 * 109.47447 * 300.00231 * 1 2 3 31 31 H 1.08994 * 109.47414 * 60.00082 * 1 2 3 32 32 H 1.08998 * 109.47413 * 239.99381 * 2 1 3 33 33 H 1.09003 * 109.46976 * 119.99562 * 2 1 3 34 34 H 0.96999 * 120.00475 * 0.02562 * 5 3 2 35 35 H 1.09000 * 109.47283 * 65.00286 * 8 6 5 36 36 H 1.09007 * 109.47200 * 185.00679 * 8 6 5 37 37 H 1.09006 * 109.47325 * 305.00003 * 8 6 5 38 38 H 1.09007 * 109.56225 * 5.98142 * 12 11 9 39 39 H 1.08996 * 109.56676 * 245.64628 * 12 11 9 40 40 H 1.08994 * 109.50459 * 295.29939 * 13 12 11 41 41 H 1.09002 * 109.50236 * 175.17905 * 13 12 11 42 42 H 1.08999 * 109.44290 * 59.87919 * 14 13 12 43 43 H 1.09002 * 109.43858 * 179.79822 * 14 13 12 44 44 H 1.08999 * 111.01486 * 34.29138 * 16 15 14 45 45 H 1.09007 * 111.01379 * 158.17372 * 16 15 14 46 46 H 1.09001 * 110.35402 * 204.78291 * 17 16 15 47 47 H 1.08999 * 110.44264 * 82.54541 * 17 16 15 48 48 H 0.97004 * 120.00074 * 180.02562 * 22 21 19 49 49 H 1.09000 * 109.91074 * 239.12963 * 27 18 17 50 50 H 1.09001 * 109.91153 * 117.86306 * 27 18 17 51 51 H 1.09001 * 109.57483 * 352.26391 * 28 11 9 52 52 H 1.08993 * 109.57743 * 112.65743 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3573 1.6670 -0.0005 6 6 3.8456 3.0483 -0.0011 7 1 3.1733 3.6716 0.5884 8 6 3.8967 3.5706 -1.4382 9 6 5.2274 3.0928 0.5989 10 8 5.9317 2.1059 0.5733 11 7 5.6803 4.2295 1.1640 12 6 4.8872 5.4649 1.1041 13 6 4.6934 6.0001 2.5263 14 6 6.0620 6.1786 3.1901 15 6 6.7804 4.8377 3.2491 16 6 5.9890 3.8453 4.1300 17 6 6.4845 4.2271 5.5484 18 7 7.9083 4.5693 5.3736 19 6 8.8673 4.5189 6.3499 20 1 9.8870 4.7905 6.1197 21 6 8.5288 4.1188 7.6352 22 7 7.2861 3.7883 7.9157 23 14 9.8368 4.0507 8.9671 24 1 9.9056 5.3619 9.6607 25 1 9.4907 2.9899 9.9470 26 1 11.1538 3.7460 8.3524 27 6 8.1276 4.9735 3.9754 28 6 6.9789 4.2593 1.8541 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 3.9877 0.9298 -0.0013 35 1 2.8856 3.6221 -1.8423 36 1 4.3429 4.5651 -1.4478 37 1 4.4980 2.8968 -2.0487 38 1 3.9153 5.2534 0.6581 39 1 5.4125 6.2071 0.5032 40 1 4.0984 5.2925 3.1035 41 1 4.1801 6.9609 2.4867 42 1 6.6573 6.8839 2.6103 43 1 5.9274 6.5628 4.2013 44 1 4.9155 4.0077 4.0340 45 1 6.2500 2.8147 3.8890 46 1 6.3785 3.3811 6.2275 47 1 5.9315 5.0871 5.9262 48 1 7.0494 3.5090 8.8141 49 1 8.8668 4.3203 3.5117 50 1 8.4672 6.0086 3.9371 51 1 7.3748 3.2467 1.9313 52 1 7.6753 4.8842 1.2951 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673645451.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:38 Heat of formation + Delta-G solvation = -51.397163 kcal Electronic energy + Delta-G solvation = -31043.709840 eV Core-core repulsion = 27043.548974 eV Total energy + Delta-G solvation = -4000.160866 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.90541 -39.80317 -38.50458 -35.97790 -35.24402 -33.26679 -33.00842 -31.91777 -30.99635 -29.90965 -28.63742 -26.11713 -25.71684 -25.13770 -23.87951 -22.98254 -22.12178 -20.53658 -20.21848 -19.46454 -18.19202 -17.86079 -16.96917 -16.70293 -16.34815 -15.92567 -15.39293 -15.32035 -14.94436 -14.64984 -14.24384 -14.06328 -13.82945 -13.76412 -13.39420 -13.33378 -13.26012 -12.86047 -12.59865 -12.47108 -12.39459 -12.26664 -12.01249 -11.97673 -11.87971 -11.55124 -11.42489 -11.17500 -11.00354 -10.90024 -10.78902 -10.57110 -10.15003 -10.11374 -10.09414 -10.02428 -9.76622 -9.69590 -9.45768 -9.35082 -8.63010 -8.57694 -6.81229 -5.63429 -3.04953 2.30562 2.47552 2.69079 3.15407 3.40594 3.45564 3.47631 4.17852 4.47033 4.50038 4.66987 4.76061 4.80821 4.84098 4.86896 4.95913 5.01357 5.12965 5.21485 5.27747 5.32656 5.34938 5.46536 5.50573 5.54409 5.55220 5.66723 5.67884 5.79729 5.83799 5.88669 5.91004 5.94495 5.98308 6.07864 6.14208 6.27779 6.36975 6.43138 6.45678 6.61009 6.70913 6.81235 6.93434 7.26092 7.30613 7.54251 7.64522 7.88280 7.96826 8.01841 8.38208 9.23799 9.84817 10.50246 11.40280 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015645 B = 0.002797 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.233582 B =10009.052495 C =10851.158035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.144 4.144 3 C 0.515 3.485 4 O -0.542 6.542 5 N -0.716 5.716 6 C 0.123 3.877 7 H 0.111 0.889 8 C -0.157 4.157 9 C 0.514 3.486 10 O -0.539 6.539 11 N -0.598 5.598 12 C 0.102 3.898 13 C -0.138 4.138 14 C -0.099 4.099 15 C -0.084 4.084 16 C -0.131 4.131 17 C 0.155 3.845 18 N -0.602 5.602 19 C -0.221 4.221 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.922 5.922 23 Si 0.914 3.086 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.150 3.850 28 C 0.130 3.870 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.411 0.589 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.103 0.897 47 H 0.010 0.990 48 H 0.251 0.749 49 H 0.024 0.976 50 H 0.024 0.976 51 H 0.093 0.907 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.779 -1.280 -19.598 22.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.184 4.184 3 C 0.302 3.698 4 O -0.419 6.419 5 N -0.370 5.370 6 C 0.015 3.985 7 H 0.128 0.872 8 C -0.216 4.216 9 C 0.301 3.699 10 O -0.416 6.416 11 N -0.331 5.331 12 C -0.021 4.021 13 C -0.176 4.176 14 C -0.137 4.137 15 C -0.085 4.085 16 C -0.169 4.169 17 C 0.031 3.969 18 N -0.328 5.328 19 C -0.350 4.350 20 H 0.095 0.905 21 C -0.207 4.207 22 N -0.571 5.571 23 Si 0.744 3.256 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.023 3.977 28 C 0.009 3.991 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.248 0.752 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.120 0.880 47 H 0.028 0.972 48 H 0.062 0.938 49 H 0.042 0.958 50 H 0.042 0.958 51 H 0.112 0.888 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.926 -1.196 -19.380 22.280 hybrid contribution 1.051 -0.178 0.799 1.333 sum -9.874 -1.374 -18.581 21.087 Atomic orbital electron populations 1.21529 0.92862 1.01652 1.03378 1.21632 0.98697 0.93411 1.04670 1.20837 0.81603 0.92144 0.75177 1.90693 1.55238 1.46513 1.49457 1.45886 1.07629 1.07923 1.75593 1.20811 0.93685 0.85526 0.98482 0.87151 1.22107 1.03574 1.01639 0.94274 1.20457 0.88269 0.82997 0.78212 1.90689 1.58077 1.34454 1.58354 1.48065 1.21088 1.09637 1.54282 1.21898 0.95733 0.86133 0.98319 1.22014 0.98804 1.01510 0.95248 1.21343 0.94610 0.96208 1.01540 1.21332 0.97697 0.95864 0.93630 1.23015 0.97846 0.97467 0.98590 1.21906 0.83167 1.00224 0.91636 1.44522 1.05830 1.78116 1.04378 1.19073 0.89480 1.37929 0.88476 0.90540 1.24780 0.96615 1.01921 0.97403 1.69815 1.15956 1.51794 1.19499 0.86082 0.80519 0.77275 0.81682 1.21689 1.21689 1.20721 1.21150 0.92828 0.97045 0.86683 1.21583 0.82994 1.02917 0.91655 0.92021 0.91870 0.92027 0.88797 0.88601 0.75241 0.90772 0.90992 0.91551 0.89848 0.90894 0.90880 0.90741 0.92221 0.90686 0.92506 0.92485 0.87958 0.97155 0.93803 0.95828 0.95849 0.88846 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.20 37.15 0.34 -0.69 16 2 C -0.14 -1.06 6.42 -27.89 -0.18 -1.24 16 3 C 0.52 5.54 7.79 -10.98 -0.09 5.45 16 4 O -0.54 -7.53 15.64 5.56 0.09 -7.44 16 5 N -0.72 -7.49 5.05 -54.93 -0.28 -7.77 16 6 C 0.12 1.34 2.11 -69.08 -0.15 1.19 16 7 H 0.11 1.25 5.95 -51.93 -0.31 0.94 16 8 C -0.16 -1.38 9.24 37.16 0.34 -1.04 16 9 C 0.51 6.81 6.90 -10.98 -0.08 6.73 16 10 O -0.54 -8.75 15.45 5.56 0.09 -8.66 16 11 N -0.60 -7.54 2.82 -173.17 -0.49 -8.03 16 12 C 0.10 1.00 5.80 -3.71 -0.02 0.98 16 13 C -0.14 -1.56 5.90 -26.55 -0.16 -1.72 16 14 C -0.10 -1.41 4.55 -27.04 -0.12 -1.54 16 15 C -0.08 -1.40 0.55 -154.13 -0.09 -1.48 16 16 C -0.13 -2.53 5.73 -24.88 -0.14 -2.67 16 17 C 0.16 3.78 5.57 -2.44 -0.01 3.77 16 18 N -0.60 -15.39 3.40 -170.24 -0.58 -15.97 16 19 C -0.22 -6.19 10.28 -15.06 -0.15 -6.34 16 20 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 21 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 22 N -0.92 -27.09 10.09 55.49 0.56 -26.53 16 23 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 C 0.15 3.06 6.43 -3.33 -0.02 3.04 16 28 C 0.13 1.91 4.96 -4.07 -0.02 1.89 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.56 8.10 -51.92 -0.42 0.14 16 31 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.41 4.04 7.78 -40.82 -0.32 3.72 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.54 7.39 -51.92 -0.38 0.15 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.69 5.13 -51.93 -0.27 0.43 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.94 6.22 -51.93 -0.32 0.61 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 1.25 7.49 -51.93 -0.39 0.86 16 44 H 0.06 1.01 6.00 -51.93 -0.31 0.70 16 45 H 0.06 1.18 7.90 -51.92 -0.41 0.77 16 46 H 0.10 2.86 5.88 -51.93 -0.31 2.55 16 47 H 0.01 0.27 7.76 -51.93 -0.40 -0.13 16 48 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 49 H 0.02 0.49 7.80 -51.93 -0.40 0.08 16 50 H 0.02 0.47 7.83 -51.93 -0.41 0.07 16 51 H 0.09 1.59 6.91 -51.93 -0.36 1.23 16 52 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 395.90 15.07 5.97 5.97 Total: -1.00 -33.35 395.90 -9.09 -42.44 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -8.78 Total: 2.87 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -0.64 Total: 5.91 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: -0.79 Total: -58.29 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: 0.17 Total: -16.10 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.35 -9.09 -42.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673645451.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.961 kcal (2) G-P(sol) polarization free energy of solvation -33.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds