Wall clock time and date at job start Tue Mar 31 2020 20:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50701 * 109.47166 * 2 1 4 4 O 1.21274 * 120.00143 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99838 * 180.02562 * 3 2 1 6 6 C 1.46502 * 119.99603 * 179.97438 * 5 3 2 7 7 H 1.08996 * 109.47484 * 35.00040 * 6 5 3 8 8 C 1.52998 * 109.47239 * 274.99826 * 6 5 3 9 9 C 1.50705 * 109.46840 * 155.00160 * 6 5 3 10 10 O 1.21274 * 120.00197 * 24.94036 * 9 6 5 11 11 N 1.34780 * 119.99576 * 204.94820 * 9 6 5 12 12 C 1.46929 * 120.70527 * 354.80997 * 11 9 6 13 13 C 1.53187 * 108.91783 * 125.81063 * 12 11 9 14 14 C 1.53158 * 109.27178 * 55.24111 * 13 12 11 15 15 C 1.52235 * 109.62761 * 299.83516 * 14 13 12 16 16 C 1.54499 * 110.25052 * 297.03886 * 15 14 13 17 17 C 1.55023 * 101.52334 * 276.23012 * 16 15 14 18 18 N 1.47478 * 104.90573 * 323.64463 * 17 16 15 19 19 C 1.36940 * 125.66298 * 204.02694 * 18 17 16 20 20 H 1.08003 * 119.99955 * 179.97438 * 19 18 17 21 21 C 1.38807 * 119.99964 * 359.97428 * 19 18 17 22 22 N 1.31615 * 120.00065 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99833 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47162 * 90.00105 * 23 21 19 25 25 H 1.48506 * 109.47130 * 209.99854 * 23 21 19 26 26 H 1.48497 * 109.47328 * 329.99637 * 23 21 19 27 27 C 1.47188 * 108.67450 * 24.00471 * 18 17 16 28 28 C 1.47085 * 120.69723 * 174.79456 * 11 9 6 29 29 H 1.09004 * 109.47134 * 180.02562 * 1 2 3 30 30 H 1.09011 * 109.47447 * 300.00231 * 1 2 3 31 31 H 1.08994 * 109.47414 * 60.00082 * 1 2 3 32 32 H 1.08998 * 109.47413 * 239.99381 * 2 1 3 33 33 H 1.09003 * 109.46976 * 119.99562 * 2 1 3 34 34 H 0.96999 * 120.00475 * 0.02562 * 5 3 2 35 35 H 1.09000 * 109.47283 * 65.00286 * 8 6 5 36 36 H 1.09007 * 109.47200 * 185.00679 * 8 6 5 37 37 H 1.09006 * 109.47325 * 305.00003 * 8 6 5 38 38 H 1.09007 * 109.56225 * 5.98142 * 12 11 9 39 39 H 1.08996 * 109.56676 * 245.64628 * 12 11 9 40 40 H 1.08994 * 109.50459 * 295.29939 * 13 12 11 41 41 H 1.09002 * 109.50236 * 175.17905 * 13 12 11 42 42 H 1.08999 * 109.44290 * 59.87919 * 14 13 12 43 43 H 1.09002 * 109.43858 * 179.79822 * 14 13 12 44 44 H 1.08999 * 111.01486 * 34.29138 * 16 15 14 45 45 H 1.09007 * 111.01379 * 158.17372 * 16 15 14 46 46 H 1.09001 * 110.35402 * 204.78291 * 17 16 15 47 47 H 1.08999 * 110.44264 * 82.54541 * 17 16 15 48 48 H 0.97004 * 120.00074 * 180.02562 * 22 21 19 49 49 H 1.09000 * 109.91074 * 239.12963 * 27 18 17 50 50 H 1.09001 * 109.91153 * 117.86306 * 27 18 17 51 51 H 1.09001 * 109.57483 * 352.26391 * 28 11 9 52 52 H 1.08993 * 109.57743 * 112.65743 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3573 1.6670 -0.0005 6 6 3.8456 3.0483 -0.0011 7 1 3.1733 3.6716 0.5884 8 6 3.8967 3.5706 -1.4382 9 6 5.2274 3.0928 0.5989 10 8 5.9317 2.1059 0.5733 11 7 5.6803 4.2295 1.1640 12 6 4.8872 5.4649 1.1041 13 6 4.6934 6.0001 2.5263 14 6 6.0620 6.1786 3.1901 15 6 6.7804 4.8377 3.2491 16 6 5.9890 3.8453 4.1300 17 6 6.4845 4.2271 5.5484 18 7 7.9083 4.5693 5.3736 19 6 8.8673 4.5189 6.3499 20 1 9.8870 4.7905 6.1197 21 6 8.5288 4.1188 7.6352 22 7 7.2861 3.7883 7.9157 23 14 9.8368 4.0507 8.9671 24 1 9.9056 5.3619 9.6607 25 1 9.4907 2.9899 9.9470 26 1 11.1538 3.7460 8.3524 27 6 8.1276 4.9735 3.9754 28 6 6.9789 4.2593 1.8541 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 3.9877 0.9298 -0.0013 35 1 2.8856 3.6221 -1.8423 36 1 4.3429 4.5651 -1.4478 37 1 4.4980 2.8968 -2.0487 38 1 3.9153 5.2534 0.6581 39 1 5.4125 6.2071 0.5032 40 1 4.0984 5.2925 3.1035 41 1 4.1801 6.9609 2.4867 42 1 6.6573 6.8839 2.6103 43 1 5.9274 6.5628 4.2013 44 1 4.9155 4.0077 4.0340 45 1 6.2500 2.8147 3.8890 46 1 6.3785 3.3811 6.2275 47 1 5.9315 5.0871 5.9262 48 1 7.0494 3.5090 8.8141 49 1 8.8668 4.3203 3.5117 50 1 8.4672 6.0086 3.9371 51 1 7.3748 3.2467 1.9313 52 1 7.6753 4.8842 1.2951 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673645451.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:34 Heat of formation + Delta-G solvation = -73.481218 kcal Electronic energy + Delta-G solvation = -31044.667476 eV Core-core repulsion = 27043.548974 eV Total energy + Delta-G solvation = -4001.118503 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -41.95442 -40.82083 -39.76084 -37.38306 -36.14994 -34.83085 -33.80960 -33.17467 -32.14279 -31.27125 -30.37414 -27.51430 -26.96467 -25.97533 -25.43112 -23.96421 -23.29154 -22.03131 -21.34524 -20.56468 -19.57500 -18.75956 -18.67535 -17.80570 -17.29869 -16.95993 -16.74363 -16.44131 -16.30420 -16.01541 -15.64261 -15.12060 -14.85901 -14.79590 -14.70610 -14.59034 -14.22037 -14.06445 -13.81256 -13.64200 -13.46110 -13.30866 -13.18439 -13.06208 -12.92934 -12.79703 -12.69743 -12.62161 -12.32557 -12.21765 -12.09810 -12.01815 -11.91890 -11.72089 -11.50079 -11.40242 -11.14219 -10.96985 -10.80642 -10.75316 -10.23449 -9.65346 -8.89571 -7.78523 -5.22722 1.34199 1.44516 1.46634 1.55350 1.62307 1.75677 2.30323 2.48545 3.25880 3.31479 3.59171 3.65779 3.75658 3.80812 3.88350 4.00167 4.02965 4.11187 4.22815 4.23570 4.28270 4.28771 4.45217 4.53407 4.60323 4.61636 4.70279 4.71695 4.76832 4.80691 4.84227 4.88849 4.90888 4.95494 5.01159 5.07570 5.13789 5.15224 5.19817 5.26626 5.38571 5.41494 5.45611 5.47103 5.50360 5.61601 5.79981 6.28006 6.31566 6.45682 6.97961 7.09108 7.17560 7.77202 8.41841 9.23480 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015645 B = 0.002797 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.233582 B =10009.052495 C =10851.158035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.141 4.141 3 C 0.511 3.489 4 O -0.577 6.577 5 N -0.716 5.716 6 C 0.126 3.874 7 H 0.109 0.891 8 C -0.150 4.150 9 C 0.512 3.488 10 O -0.574 6.574 11 N -0.597 5.597 12 C 0.101 3.899 13 C -0.132 4.132 14 C -0.096 4.096 15 C -0.069 4.069 16 C -0.113 4.113 17 C 0.163 3.837 18 N -0.625 5.625 19 C -0.237 4.237 20 H 0.082 0.918 21 C -0.070 4.070 22 N -0.950 5.950 23 Si 0.981 3.019 24 H -0.285 1.285 25 H -0.295 1.295 26 H -0.269 1.269 27 C 0.143 3.857 28 C 0.139 3.861 29 H 0.083 0.917 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.414 0.586 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.054 0.946 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.045 0.955 44 H 0.073 0.927 45 H 0.039 0.961 46 H 0.062 0.938 47 H -0.011 1.011 48 H 0.246 0.754 49 H 0.023 0.977 50 H 0.033 0.967 51 H 0.066 0.934 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.879 -0.406 -21.939 24.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.180 4.180 3 C 0.300 3.700 4 O -0.457 6.457 5 N -0.370 5.370 6 C 0.018 3.982 7 H 0.127 0.873 8 C -0.208 4.208 9 C 0.300 3.700 10 O -0.453 6.453 11 N -0.329 5.329 12 C -0.021 4.021 13 C -0.170 4.170 14 C -0.134 4.134 15 C -0.070 4.070 16 C -0.152 4.152 17 C 0.037 3.963 18 N -0.351 5.351 19 C -0.366 4.366 20 H 0.100 0.900 21 C -0.262 4.262 22 N -0.600 5.600 23 Si 0.809 3.191 24 H -0.212 1.212 25 H -0.221 1.221 26 H -0.194 1.194 27 C 0.018 3.982 28 C 0.016 3.984 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.137 0.863 33 H 0.126 0.874 34 H 0.251 0.749 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.072 0.928 41 H 0.122 0.878 42 H 0.103 0.897 43 H 0.064 0.936 44 H 0.091 0.909 45 H 0.057 0.943 46 H 0.080 0.920 47 H 0.007 0.993 48 H 0.055 0.945 49 H 0.041 0.959 50 H 0.051 0.949 51 H 0.085 0.915 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.018 -0.301 -21.758 24.390 hybrid contribution 1.101 -0.445 1.544 1.947 sum -9.917 -0.746 -20.214 22.528 Atomic orbital electron populations 1.21529 0.93064 1.02661 1.02076 1.21709 0.98430 0.91441 1.06441 1.21435 0.81221 0.93173 0.74147 1.90674 1.55957 1.47825 1.51203 1.45966 1.07775 1.08016 1.75221 1.20844 0.91791 0.85942 0.99627 0.87313 1.22070 1.03728 1.02534 0.92473 1.20887 0.88821 0.82487 0.77797 1.90676 1.59160 1.35706 1.59775 1.48124 1.20563 1.10652 1.53536 1.22166 0.96844 0.85335 0.97726 1.21983 0.96665 1.02745 0.95588 1.21314 0.96585 0.94678 1.00790 1.21233 0.95140 0.96715 0.93928 1.22773 0.99080 0.97221 0.96090 1.21611 0.83194 0.97670 0.93776 1.44819 1.05782 1.78382 1.06095 1.19474 0.90319 1.37408 0.89418 0.90049 1.25653 0.98707 1.02170 0.99678 1.70086 1.17759 1.52773 1.19424 0.85038 0.78428 0.76981 0.78651 1.21225 1.22110 1.19401 1.21368 0.95163 0.97136 0.84553 1.21320 0.84659 1.01648 0.90735 0.89820 0.93654 0.92857 0.86259 0.87393 0.74876 0.90782 0.89086 0.91631 0.87794 0.87839 0.92774 0.87781 0.89716 0.93619 0.90872 0.94254 0.91987 0.99312 0.94470 0.95902 0.94913 0.91499 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.20 71.98 0.66 -1.23 16 2 C -0.14 -1.84 6.42 29.85 0.19 -1.64 16 3 C 0.51 10.41 7.79 87.66 0.68 11.10 16 4 O -0.58 -15.60 15.64 -3.01 -0.05 -15.65 16 5 N -0.72 -14.10 5.05 -446.10 -2.25 -16.35 16 6 C 0.13 2.50 2.11 44.25 0.09 2.60 16 7 H 0.11 2.22 5.95 -2.39 -0.01 2.21 16 8 C -0.15 -2.23 9.24 71.98 0.66 -1.56 16 9 C 0.51 12.74 6.90 87.66 0.61 13.34 16 10 O -0.57 -18.29 15.45 -3.01 -0.05 -18.33 16 11 N -0.60 -13.60 2.82 -820.18 -2.32 -15.91 16 12 C 0.10 1.57 5.80 86.36 0.50 2.08 16 13 C -0.13 -2.59 5.90 30.71 0.18 -2.41 16 14 C -0.10 -2.54 4.55 30.39 0.14 -2.40 16 15 C -0.07 -2.24 0.55 -51.93 -0.03 -2.27 16 16 C -0.11 -4.48 5.73 31.80 0.18 -4.30 16 17 C 0.16 8.31 5.57 86.88 0.48 8.79 16 18 N -0.62 -32.85 3.40 -692.52 -2.36 -35.20 16 19 C -0.24 -13.57 10.28 84.03 0.86 -12.71 16 20 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 21 C -0.07 -4.05 5.49 84.86 0.47 -3.59 16 22 N -0.95 -58.16 10.09 21.65 0.22 -57.94 16 23 Si 0.98 46.56 29.55 68.60 2.03 48.59 16 24 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 25 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 27 C 0.14 5.86 6.43 86.47 0.56 6.41 16 28 C 0.14 3.85 4.96 86.04 0.43 4.28 16 29 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.04 0.78 8.10 -2.38 -0.02 0.77 16 31 H 0.05 0.82 8.10 -2.39 -0.02 0.81 16 32 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.41 7.71 7.78 -92.71 -0.72 6.99 16 35 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.09 1.00 7.39 -2.38 -0.02 0.98 16 37 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.10 1.28 5.13 -2.38 -0.01 1.27 16 39 H 0.10 1.11 8.14 -2.39 -0.02 1.10 16 40 H 0.05 1.28 6.22 -2.39 -0.01 1.27 16 41 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.04 1.49 7.49 -2.39 -0.02 1.47 16 44 H 0.07 2.64 6.00 -2.39 -0.01 2.62 16 45 H 0.04 1.68 7.90 -2.38 -0.02 1.66 16 46 H 0.06 3.68 5.88 -2.39 -0.01 3.67 16 47 H -0.01 -0.60 7.76 -2.39 -0.02 -0.62 16 48 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 49 H 0.02 0.94 7.80 -2.39 -0.02 0.92 16 50 H 0.03 1.29 7.83 -2.39 -0.02 1.27 16 51 H 0.07 2.25 6.91 -2.39 -0.02 2.23 16 52 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -76.46 395.90 2.09 -74.37 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 0.20 Total: 19.94 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: 6.67 Total: 16.49 kcal Atomic # 7 Polarization: -118.70 SS G_CDS: -6.71 Total: -125.41 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -0.09 Total: -33.98 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -76.46 2.09 -74.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673645451.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.890 kcal (2) G-P(sol) polarization free energy of solvation -76.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds