Wall clock time and date at job start Tue Mar 31 2020 22:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47210 * 2 1 4 4 N 1.46495 * 109.46974 * 120.00459 * 2 1 3 5 5 C 1.34783 * 120.00138 * 274.99701 * 4 2 1 6 6 O 1.21280 * 119.99508 * 0.02562 * 5 4 2 7 7 C 1.50702 * 120.00171 * 179.97438 * 5 4 2 8 8 H 1.09002 * 115.56044 * 34.30916 * 7 5 4 9 9 C 1.52997 * 117.49669 * 248.62535 * 7 5 4 10 10 C 1.53000 * 117.49604 * 180.02562 * 7 5 4 11 11 H 1.08990 * 117.49990 * 359.97438 * 10 7 5 12 12 C 1.52998 * 117.49463 * 214.97711 * 10 7 5 13 13 C 1.53000 * 109.47153 * 240.00297 * 2 1 3 14 14 C 1.53117 * 109.52275 * 179.87579 * 13 2 1 15 15 C 1.53045 * 109.27389 * 182.50533 * 14 13 2 16 16 N 1.46846 * 109.57792 * 59.08209 * 15 14 13 17 17 C 1.46903 * 111.00099 * 174.19402 * 16 15 14 18 18 C 1.50699 * 109.46808 * 294.21356 * 17 16 15 19 19 O 1.21287 * 120.00390 * 359.97438 * 18 17 16 20 20 N 1.34783 * 119.99812 * 180.02562 * 18 17 16 21 21 C 1.37090 * 120.00308 * 179.97438 * 20 18 17 22 22 H 1.08011 * 119.99847 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00427 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00014 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00209 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47375 * 59.99728 * 25 23 21 27 27 H 1.48502 * 109.47118 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47121 * 299.99621 * 25 23 21 29 29 C 1.46844 * 111.19721 * 298.29165 * 16 15 14 30 30 C 1.53033 * 109.52576 * 61.74278 * 29 16 15 31 31 H 1.08998 * 109.46972 * 299.99744 * 1 2 3 32 32 H 1.09002 * 109.46705 * 59.99649 * 1 2 3 33 33 H 1.08995 * 109.47427 * 179.97438 * 1 2 3 34 34 H 0.96998 * 120.00377 * 94.99548 * 4 2 1 35 35 H 1.08999 * 117.49685 * 145.02383 * 9 7 5 36 36 H 1.08999 * 117.52022 * 359.97438 * 9 7 5 37 37 H 1.09003 * 109.47433 * 299.99097 * 12 10 7 38 38 H 1.09002 * 109.47174 * 59.99024 * 12 10 7 39 39 H 1.09001 * 109.47126 * 179.97438 * 12 10 7 40 40 H 1.09001 * 109.52084 * 300.00385 * 13 2 1 41 41 H 1.08996 * 109.50080 * 302.37917 * 14 13 2 42 42 H 1.08997 * 109.50459 * 62.50385 * 14 13 2 43 43 H 1.09005 * 109.40900 * 299.06496 * 15 14 13 44 44 H 1.09002 * 109.45678 * 179.13009 * 15 14 13 45 45 H 1.09001 * 109.47217 * 54.21011 * 17 16 15 46 46 H 1.08998 * 109.47208 * 174.21106 * 17 16 15 47 47 H 0.97004 * 119.99797 * 359.97438 * 20 18 17 48 48 H 0.97001 * 120.00194 * 180.02562 * 24 23 21 49 49 H 1.09001 * 109.46524 * 301.72320 * 29 16 15 50 50 H 1.08998 * 109.45598 * 181.75525 * 29 16 15 51 51 H 1.09002 * 109.50838 * 180.88327 * 30 29 16 52 52 H 1.08999 * 109.50744 * 60.75357 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3572 6 8 1.8582 1.1582 2.4117 7 6 2.6488 -0.7291 3.5877 8 1 3.3926 -1.5062 3.4116 9 6 1.6563 -0.9473 4.7315 10 6 2.7723 0.0889 4.8748 11 1 2.4910 1.1410 4.8314 12 6 3.9308 -0.2462 5.8163 13 6 2.0400 -0.7212 -1.2493 14 6 3.5712 -0.7192 -1.2520 15 6 4.0749 -1.3863 -2.5340 16 7 3.5633 -0.6576 -3.7017 17 6 4.1378 -1.1869 -4.9458 18 6 5.6202 -0.9169 -4.9691 19 8 6.1463 -0.3400 -4.0410 20 7 6.3613 -1.3157 -6.0219 21 6 7.7098 -1.0697 -6.0435 22 1 8.1783 -0.5559 -5.2169 23 6 8.4739 -1.4813 -7.1285 24 7 7.9041 -2.1069 -8.1339 25 14 10.3115 -1.1467 -7.1575 26 1 10.9538 -1.8096 -5.9943 27 1 10.8924 -1.6823 -8.4148 28 1 10.5492 0.3174 -7.0862 29 6 2.0958 -0.6878 -3.7452 30 6 1.5329 0.0016 -2.5003 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 2.2489 -1.6318 1.1525 35 1 1.7472 -1.8679 5.3079 36 1 0.6405 -0.5767 4.5944 37 1 3.8467 -1.2833 6.1412 38 1 4.8766 -0.1050 5.2933 39 1 3.8946 0.4110 6.6852 40 1 1.6771 -1.7490 -1.2502 41 1 3.9337 0.3079 -1.2107 42 1 3.9374 -1.2702 -0.3858 43 1 3.7243 -2.4179 -2.5673 44 1 5.1648 -1.3727 -2.5463 45 1 3.9634 -2.2616 -4.9982 46 1 3.6663 -0.7003 -5.7996 47 1 5.9405 -1.7769 -6.7644 48 1 8.4376 -2.3946 -8.8912 49 1 1.7544 -1.7226 -3.7729 50 1 1.7482 -0.1668 -4.6373 51 1 0.4438 -0.0347 -2.5251 52 1 1.8626 1.0404 -2.4791 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677334787.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:14 Heat of formation + Delta-G solvation = -60.319695 kcal Electronic energy + Delta-G solvation = -29392.669205 eV Core-core repulsion = 25392.121428 eV Total energy + Delta-G solvation = -4000.547776 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.45676 -39.32069 -38.02438 -37.08626 -35.72063 -33.91601 -32.92105 -31.29399 -30.89495 -30.16063 -28.94598 -27.22607 -25.23415 -24.47484 -23.21960 -22.79679 -21.39422 -20.77775 -20.38273 -19.56464 -19.16446 -17.84398 -17.66157 -16.40709 -15.98521 -15.64604 -15.23069 -14.91390 -14.84749 -14.64649 -14.39479 -14.03658 -13.96822 -13.76040 -13.62344 -13.55119 -13.30689 -13.13057 -13.01115 -12.65590 -12.38813 -12.31954 -12.00431 -11.81563 -11.74523 -11.65875 -11.45665 -11.27619 -11.04009 -10.98968 -10.72378 -10.61772 -10.45072 -10.43779 -10.38413 -10.22310 -10.19116 -9.89922 -9.44611 -9.22165 -8.39843 -7.95915 -7.79905 -6.40465 -3.81141 2.30588 2.90749 3.20687 3.26220 3.30690 3.49034 3.92087 4.02128 4.25661 4.32253 4.40853 4.44430 4.51465 4.73716 4.77854 4.85468 4.96953 5.07874 5.18044 5.23162 5.24277 5.28289 5.30214 5.33851 5.39656 5.41540 5.51628 5.55057 5.57120 5.65702 5.69079 5.71015 5.78488 5.81276 5.88634 5.90426 5.95599 5.96692 6.05486 6.13781 6.20826 6.30383 6.34918 6.49557 6.55388 7.32713 7.35353 7.48511 7.56207 8.06887 8.07803 8.63563 9.19516 9.56158 10.08294 10.77234 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014857 B = 0.002099 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.176735 B =13334.818180 C =14858.333822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.090 0.910 4 N -0.719 5.719 5 C 0.544 3.456 6 O -0.542 6.542 7 C -0.193 4.193 8 H 0.123 0.877 9 C -0.150 4.150 10 C -0.121 4.121 11 H 0.117 0.883 12 C -0.125 4.125 13 C -0.095 4.095 14 C -0.105 4.105 15 C 0.053 3.947 16 N -0.515 5.515 17 C 0.047 3.953 18 C 0.444 3.556 19 O -0.577 6.577 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.273 1.273 29 C 0.056 3.944 30 C -0.107 4.107 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.400 0.600 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.019 0.981 44 H 0.103 0.897 45 H 0.045 0.955 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.028 0.972 50 H 0.074 0.926 51 H 0.068 0.932 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.250 -2.310 19.439 25.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.043 3.957 3 H 0.108 0.892 4 N -0.369 5.369 5 C 0.330 3.670 6 O -0.419 6.419 7 C -0.214 4.214 8 H 0.141 0.859 9 C -0.187 4.187 10 C -0.140 4.140 11 H 0.135 0.865 12 C -0.182 4.182 13 C -0.114 4.114 14 C -0.142 4.142 15 C -0.074 4.074 16 N -0.240 5.240 17 C -0.085 4.085 18 C 0.229 3.771 19 O -0.461 6.461 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.072 4.072 30 C -0.145 4.145 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.234 0.766 35 H 0.122 0.878 36 H 0.116 0.884 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.037 0.963 44 H 0.121 0.879 45 H 0.063 0.937 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.046 0.954 50 H 0.092 0.908 51 H 0.087 0.913 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.866 -0.654 19.948 25.496 hybrid contribution 0.510 -1.625 -0.910 1.932 sum -15.355 -2.279 19.038 24.565 Atomic orbital electron populations 1.22214 0.95428 1.01941 1.02540 1.21038 0.93711 0.97693 0.83296 0.89221 1.46005 1.67360 1.13993 1.09579 1.19638 0.76958 0.86649 0.83712 1.90693 1.50309 1.15918 1.84958 1.22334 1.05042 1.04765 0.89259 0.85882 1.23084 0.95487 1.01171 0.98971 1.22365 0.98260 0.98245 0.95122 0.86499 1.21412 0.96830 1.01512 0.98422 1.21522 0.96865 0.99369 0.93653 1.21570 0.93349 1.02470 0.96852 1.22241 1.02924 0.93053 0.89188 1.61494 1.04894 1.55730 1.01845 1.21831 0.95654 0.98043 0.92952 1.19766 0.87572 0.84980 0.84770 1.90483 1.73016 1.45661 1.36911 1.41870 1.08369 1.51614 1.18329 1.19638 0.82764 1.35266 1.05091 0.88002 1.25255 1.00606 0.96879 0.95258 1.69605 1.37023 1.39396 1.08387 0.85924 0.82066 0.78871 0.77390 1.19959 1.21010 1.19890 1.22086 0.88244 0.98530 0.98388 1.21617 0.99374 1.00628 0.92863 0.92404 0.91165 0.92635 0.76615 0.87833 0.88391 0.92360 0.91772 0.91660 0.91199 0.90780 0.92088 0.96311 0.87878 0.93660 0.89413 0.77521 0.91864 0.95398 0.90754 0.91302 0.90632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.14 37.16 0.34 -1.11 16 2 C 0.15 1.48 2.16 -67.93 -0.15 1.33 16 3 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 4 N -0.72 -6.64 4.43 -53.81 -0.24 -6.88 16 5 C 0.54 6.01 7.58 -10.98 -0.08 5.93 16 6 O -0.54 -8.08 15.92 5.56 0.09 -7.99 16 7 C -0.19 -1.58 5.91 -91.77 -0.54 -2.12 16 8 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 9 C -0.15 -1.02 9.88 -26.75 -0.26 -1.28 16 10 C -0.12 -0.98 5.92 -90.64 -0.54 -1.51 16 11 H 0.12 1.14 7.67 -51.93 -0.40 0.74 16 12 C -0.12 -0.78 10.19 37.16 0.38 -0.40 16 13 C -0.09 -0.97 1.89 -90.49 -0.17 -1.14 16 14 C -0.10 -1.36 5.19 -26.65 -0.14 -1.50 16 15 C 0.05 0.85 5.10 -3.83 -0.02 0.83 16 16 N -0.51 -8.48 4.40 -236.11 -1.04 -9.52 16 17 C 0.05 0.83 5.45 -4.97 -0.03 0.80 16 18 C 0.44 10.44 7.46 -10.98 -0.08 10.36 16 19 O -0.58 -15.44 13.90 5.55 0.08 -15.36 16 20 N -0.57 -14.31 5.29 -10.96 -0.06 -14.36 16 21 C -0.30 -8.30 9.68 -14.94 -0.14 -8.44 16 22 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 25 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 29 C 0.06 0.70 5.46 -3.84 -0.02 0.67 16 30 C -0.11 -1.13 4.95 -26.65 -0.13 -1.27 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.57 6.49 -51.93 -0.34 0.23 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.40 2.81 8.41 -40.82 -0.34 2.46 16 35 H 0.10 0.51 8.05 -51.93 -0.42 0.10 16 36 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.30 7.90 -51.93 -0.41 -0.11 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.06 0.70 7.54 -51.93 -0.39 0.31 16 43 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.10 2.05 5.78 -51.93 -0.30 1.75 16 45 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 46 H 0.09 1.42 7.99 -51.93 -0.41 1.01 16 47 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 48 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 49 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 50 H 0.07 0.87 8.01 -51.93 -0.42 0.46 16 51 H 0.07 0.59 6.58 -51.93 -0.34 0.25 16 52 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 412.35 15.07 6.21 6.21 Total: -1.00 -32.80 412.35 -10.01 -42.81 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -9.07 Total: 11.20 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -1.69 Total: 1.64 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -0.61 Total: -54.60 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: 0.17 Total: -23.35 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.80 -10.01 -42.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677334787.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.513 kcal (2) G-P(sol) polarization free energy of solvation -32.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds