Wall clock time and date at job start Tue Mar 31 2020 22:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47210 * 2 1 4 4 N 1.46495 * 109.46974 * 120.00459 * 2 1 3 5 5 C 1.34783 * 120.00138 * 274.99701 * 4 2 1 6 6 O 1.21280 * 119.99508 * 0.02562 * 5 4 2 7 7 C 1.50702 * 120.00171 * 179.97438 * 5 4 2 8 8 H 1.09002 * 115.56044 * 34.30916 * 7 5 4 9 9 C 1.52997 * 117.49669 * 248.62535 * 7 5 4 10 10 C 1.53000 * 117.49604 * 180.02562 * 7 5 4 11 11 H 1.08990 * 117.49990 * 359.97438 * 10 7 5 12 12 C 1.52998 * 117.49463 * 214.97711 * 10 7 5 13 13 C 1.53000 * 109.47153 * 240.00297 * 2 1 3 14 14 C 1.53117 * 109.52275 * 179.87579 * 13 2 1 15 15 C 1.53045 * 109.27389 * 182.50533 * 14 13 2 16 16 N 1.46846 * 109.57792 * 59.08209 * 15 14 13 17 17 C 1.46903 * 111.00099 * 174.19402 * 16 15 14 18 18 C 1.50699 * 109.46808 * 294.21356 * 17 16 15 19 19 O 1.21287 * 120.00390 * 359.97438 * 18 17 16 20 20 N 1.34783 * 119.99812 * 180.02562 * 18 17 16 21 21 C 1.37090 * 120.00308 * 179.97438 * 20 18 17 22 22 H 1.08011 * 119.99847 * 359.97438 * 21 20 18 23 23 C 1.38945 * 120.00427 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00014 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00209 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47375 * 59.99728 * 25 23 21 27 27 H 1.48502 * 109.47118 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47121 * 299.99621 * 25 23 21 29 29 C 1.46844 * 111.19721 * 298.29165 * 16 15 14 30 30 C 1.53033 * 109.52576 * 61.74278 * 29 16 15 31 31 H 1.08998 * 109.46972 * 299.99744 * 1 2 3 32 32 H 1.09002 * 109.46705 * 59.99649 * 1 2 3 33 33 H 1.08995 * 109.47427 * 179.97438 * 1 2 3 34 34 H 0.96998 * 120.00377 * 94.99548 * 4 2 1 35 35 H 1.08999 * 117.49685 * 145.02383 * 9 7 5 36 36 H 1.08999 * 117.52022 * 359.97438 * 9 7 5 37 37 H 1.09003 * 109.47433 * 299.99097 * 12 10 7 38 38 H 1.09002 * 109.47174 * 59.99024 * 12 10 7 39 39 H 1.09001 * 109.47126 * 179.97438 * 12 10 7 40 40 H 1.09001 * 109.52084 * 300.00385 * 13 2 1 41 41 H 1.08996 * 109.50080 * 302.37917 * 14 13 2 42 42 H 1.08997 * 109.50459 * 62.50385 * 14 13 2 43 43 H 1.09005 * 109.40900 * 299.06496 * 15 14 13 44 44 H 1.09002 * 109.45678 * 179.13009 * 15 14 13 45 45 H 1.09001 * 109.47217 * 54.21011 * 17 16 15 46 46 H 1.08998 * 109.47208 * 174.21106 * 17 16 15 47 47 H 0.97004 * 119.99797 * 359.97438 * 20 18 17 48 48 H 0.97001 * 120.00194 * 180.02562 * 24 23 21 49 49 H 1.09001 * 109.46524 * 301.72320 * 29 16 15 50 50 H 1.08998 * 109.45598 * 181.75525 * 29 16 15 51 51 H 1.09002 * 109.50838 * 180.88327 * 30 29 16 52 52 H 1.08999 * 109.50744 * 60.75357 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3572 6 8 1.8582 1.1582 2.4117 7 6 2.6488 -0.7291 3.5877 8 1 3.3926 -1.5062 3.4116 9 6 1.6563 -0.9473 4.7315 10 6 2.7723 0.0889 4.8748 11 1 2.4910 1.1410 4.8314 12 6 3.9308 -0.2462 5.8163 13 6 2.0400 -0.7212 -1.2493 14 6 3.5712 -0.7192 -1.2520 15 6 4.0749 -1.3863 -2.5340 16 7 3.5633 -0.6576 -3.7017 17 6 4.1378 -1.1869 -4.9458 18 6 5.6202 -0.9169 -4.9691 19 8 6.1463 -0.3400 -4.0410 20 7 6.3613 -1.3157 -6.0219 21 6 7.7098 -1.0697 -6.0435 22 1 8.1783 -0.5559 -5.2169 23 6 8.4739 -1.4813 -7.1285 24 7 7.9041 -2.1069 -8.1339 25 14 10.3115 -1.1467 -7.1575 26 1 10.9538 -1.8096 -5.9943 27 1 10.8924 -1.6823 -8.4148 28 1 10.5492 0.3174 -7.0862 29 6 2.0958 -0.6878 -3.7452 30 6 1.5329 0.0016 -2.5003 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 2.2489 -1.6318 1.1525 35 1 1.7472 -1.8679 5.3079 36 1 0.6405 -0.5767 4.5944 37 1 3.8467 -1.2833 6.1412 38 1 4.8766 -0.1050 5.2933 39 1 3.8946 0.4110 6.6852 40 1 1.6771 -1.7490 -1.2502 41 1 3.9337 0.3079 -1.2107 42 1 3.9374 -1.2702 -0.3858 43 1 3.7243 -2.4179 -2.5673 44 1 5.1648 -1.3727 -2.5463 45 1 3.9634 -2.2616 -4.9982 46 1 3.6663 -0.7003 -5.7996 47 1 5.9405 -1.7769 -6.7644 48 1 8.4376 -2.3946 -8.8912 49 1 1.7544 -1.7226 -3.7729 50 1 1.7482 -0.1668 -4.6373 51 1 0.4438 -0.0347 -2.5251 52 1 1.8626 1.0404 -2.4791 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677334787.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:12 Heat of formation + Delta-G solvation = -83.010465 kcal Electronic energy + Delta-G solvation = -29393.653150 eV Core-core repulsion = 25392.121428 eV Total energy + Delta-G solvation = -4001.531722 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.33321 -40.60586 -39.48450 -37.94207 -36.79174 -35.87823 -34.00323 -33.24956 -32.01027 -31.10560 -29.50730 -28.64209 -26.59985 -25.67646 -24.30928 -23.85417 -22.16737 -21.59813 -21.22129 -20.99052 -20.48340 -19.86237 -18.44087 -17.73805 -17.22695 -16.82664 -16.52541 -16.31923 -16.07697 -15.73466 -15.57678 -15.33136 -15.22549 -15.00753 -14.66444 -14.39849 -14.28245 -14.18159 -13.77221 -13.71697 -13.55798 -13.45750 -13.20659 -12.99632 -12.91756 -12.75358 -12.58606 -12.42941 -12.36038 -12.30409 -12.14028 -12.07914 -11.56333 -11.53583 -11.40938 -11.31694 -11.24087 -11.05511 -10.73797 -10.25356 -10.05132 -9.98022 -9.11763 -8.45873 -5.94288 1.39169 1.40818 1.49325 1.51660 2.06981 2.15224 2.28635 2.81732 2.85404 3.20895 3.40569 3.57579 3.71439 3.78019 3.81126 3.88005 3.92671 4.21351 4.23488 4.29785 4.33387 4.36126 4.41017 4.45604 4.50872 4.55008 4.58114 4.64170 4.74175 4.80215 4.80743 4.85643 4.89641 4.92659 4.97060 5.03613 5.06440 5.09194 5.16906 5.20328 5.25244 5.37550 5.40090 5.40966 5.45852 5.57887 5.93127 6.14471 6.34067 6.57131 6.62219 7.14079 7.26878 7.58004 8.14480 8.71250 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014857 B = 0.002099 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.176735 B =13334.818180 C =14858.333822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.151 3.849 3 H 0.057 0.943 4 N -0.709 5.709 5 C 0.537 3.463 6 O -0.589 6.589 7 C -0.198 4.198 8 H 0.145 0.855 9 C -0.130 4.130 10 C -0.135 4.135 11 H 0.090 0.910 12 C -0.120 4.120 13 C -0.081 4.081 14 C -0.097 4.097 15 C 0.057 3.943 16 N -0.539 5.539 17 C 0.059 3.941 18 C 0.440 3.560 19 O -0.615 6.615 20 N -0.575 5.575 21 C -0.331 4.331 22 H 0.077 0.923 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.992 3.008 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.274 1.274 29 C 0.055 3.945 30 C -0.104 4.104 31 H 0.039 0.961 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.414 0.586 35 H 0.131 0.869 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.040 0.960 42 H 0.074 0.926 43 H 0.038 0.962 44 H 0.055 0.945 45 H 0.067 0.933 46 H 0.108 0.892 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.048 0.952 50 H 0.084 0.916 51 H 0.101 0.899 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.795 -4.408 19.736 26.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.046 3.954 3 H 0.075 0.925 4 N -0.359 5.359 5 C 0.325 3.675 6 O -0.470 6.470 7 C -0.219 4.219 8 H 0.163 0.837 9 C -0.168 4.168 10 C -0.154 4.154 11 H 0.109 0.891 12 C -0.177 4.177 13 C -0.100 4.100 14 C -0.135 4.135 15 C -0.070 4.070 16 N -0.265 5.265 17 C -0.072 4.072 18 C 0.227 3.773 19 O -0.501 6.501 20 N -0.213 5.213 21 C -0.461 4.461 22 H 0.095 0.905 23 C -0.214 4.214 24 N -0.561 5.561 25 Si 0.815 3.185 26 H -0.197 1.197 27 H -0.194 1.194 28 H -0.199 1.199 29 C -0.072 4.072 30 C -0.142 4.142 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.250 0.750 35 H 0.149 0.851 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.114 0.886 41 H 0.059 0.941 42 H 0.093 0.907 43 H 0.056 0.944 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.126 0.874 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.066 0.934 50 H 0.102 0.898 51 H 0.119 0.881 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.436 -2.793 20.227 26.851 hybrid contribution 0.962 -0.931 -0.980 1.660 sum -16.474 -3.725 19.247 25.607 Atomic orbital electron populations 1.22145 0.93854 1.03086 1.02251 1.20905 0.94793 0.96096 0.83575 0.92519 1.45940 1.66542 1.14558 1.08894 1.20194 0.76250 0.86228 0.84842 1.90672 1.52517 1.18063 1.85765 1.22392 1.06285 1.05119 0.88107 0.83730 1.23166 0.94500 1.01487 0.97602 1.22381 0.99921 0.97326 0.95768 0.89144 1.21396 0.95611 1.02689 0.97993 1.21417 0.94342 1.00716 0.93521 1.21479 0.95675 1.00272 0.96050 1.22092 1.00175 0.94429 0.90354 1.61455 1.07615 1.56249 1.01156 1.21701 0.91231 0.99629 0.94658 1.20855 0.89969 0.83125 0.83303 1.90466 1.74578 1.46932 1.38099 1.41939 1.07883 1.52342 1.19126 1.19586 0.84399 1.36840 1.05268 0.90511 1.26019 1.04618 0.96198 0.94521 1.69664 1.38484 1.39362 1.08620 0.85011 0.76969 0.78598 0.77887 1.19711 1.19419 1.19893 1.22213 0.85261 1.00076 0.99640 1.21638 1.01155 0.99281 0.92150 0.94134 0.90087 0.90638 0.74953 0.85066 0.89149 0.90596 0.92359 0.91210 0.88598 0.94131 0.90729 0.94433 0.92653 0.91536 0.87355 0.77042 0.91335 0.93351 0.89803 0.88106 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.14 71.98 0.66 -1.78 16 2 C 0.15 2.90 2.16 44.99 0.10 3.00 16 3 H 0.06 1.49 7.58 -2.39 -0.02 1.48 16 4 N -0.71 -12.29 4.43 -442.53 -1.96 -14.25 16 5 C 0.54 11.86 7.58 87.66 0.66 12.52 16 6 O -0.59 -18.45 15.92 -3.03 -0.05 -18.50 16 7 C -0.20 -3.03 5.91 -11.54 -0.07 -3.10 16 8 H 0.15 1.56 8.14 -2.39 -0.02 1.54 16 9 C -0.13 -1.55 9.88 30.58 0.30 -1.24 16 10 C -0.14 -2.13 5.92 -10.81 -0.06 -2.20 16 11 H 0.09 1.91 7.67 -2.39 -0.02 1.89 16 12 C -0.12 -1.35 10.19 71.98 0.73 -0.62 16 13 C -0.08 -1.48 1.89 -10.71 -0.02 -1.50 16 14 C -0.10 -2.49 5.19 30.65 0.16 -2.33 16 15 C 0.06 1.80 5.10 86.33 0.44 2.24 16 16 N -0.54 -17.26 4.40 -900.92 -3.96 -21.23 16 17 C 0.06 2.04 5.45 85.56 0.47 2.51 16 18 C 0.44 21.18 7.46 87.66 0.65 21.84 16 19 O -0.61 -34.41 13.90 -3.05 -0.04 -34.45 16 20 N -0.58 -29.79 5.29 -306.98 -1.62 -31.42 16 21 C -0.33 -18.99 9.68 84.04 0.81 -18.18 16 22 H 0.08 4.70 7.16 -2.90 -0.02 4.68 16 23 C -0.01 -0.75 5.50 84.92 0.47 -0.28 16 24 N -0.92 -49.88 13.05 21.66 0.28 -49.60 16 25 Si 0.99 43.36 29.55 68.60 2.03 45.39 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 27 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 28 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 29 C 0.06 1.22 5.46 86.32 0.47 1.69 16 30 C -0.10 -1.96 4.95 30.65 0.15 -1.81 16 31 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.08 1.09 6.49 -2.39 -0.02 1.07 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.41 4.82 8.41 -92.71 -0.78 4.04 16 35 H 0.13 0.85 8.05 -2.39 -0.02 0.83 16 36 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 0.59 7.90 -2.39 -0.02 0.57 16 38 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.07 1.67 7.54 -2.39 -0.02 1.65 16 43 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 44 H 0.06 2.29 5.78 -2.39 -0.01 2.27 16 45 H 0.07 2.04 8.12 -2.39 -0.02 2.02 16 46 H 0.11 3.31 7.99 -2.39 -0.02 3.30 16 47 H 0.40 19.41 7.90 -92.71 -0.73 18.68 16 48 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 49 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.08 1.71 8.01 -2.39 -0.02 1.69 16 51 H 0.10 1.31 6.58 -2.39 -0.02 1.30 16 52 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -75.51 412.35 0.01 -75.50 By element: Atomic # 1 Polarization: 38.39 SS G_CDS: -0.59 Total: 37.80 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 5.92 Total: 10.76 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -7.26 Total: -116.49 kcal Atomic # 8 Polarization: -52.87 SS G_CDS: -0.09 Total: -52.96 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -75.51 0.01 -75.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677334787.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.507 kcal (2) G-P(sol) polarization free energy of solvation -75.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds