Wall clock time and date at job start Tue Mar 31 2020 20:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09003 * 110.32136 * 2 1 4 4 C 1.55022 * 110.35616 * 237.68147 * 2 1 3 5 5 C 1.54515 * 101.53582 * 204.76593 * 4 2 1 6 6 C 1.53702 * 103.64638 * 34.82137 * 5 4 2 7 7 N 1.47176 * 107.10627 * 338.45423 * 6 5 4 8 8 C 1.34778 * 125.65791 * 178.51054 * 7 6 5 9 9 O 1.21280 * 120.00230 * 179.97438 * 8 7 6 10 10 C 1.50697 * 120.00070 * 359.97438 * 8 7 6 11 11 C 1.53005 * 109.47084 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.46904 * 179.97438 * 11 10 8 13 13 C 1.50701 * 109.47009 * 179.97438 * 12 11 10 14 14 N 1.34777 * 120.00119 * 180.02562 * 13 12 11 15 15 O 1.21279 * 120.00195 * 359.97438 * 13 12 11 16 16 C 1.52273 * 110.20225 * 276.40299 * 5 4 2 17 17 C 1.53309 * 109.42214 * 177.80848 * 16 5 4 18 18 N 1.46931 * 108.70629 * 53.51145 * 17 16 5 19 19 C 1.36940 * 120.56208 * 125.73970 * 18 17 16 20 20 H 1.08000 * 120.00163 * 331.86438 * 19 18 17 21 21 C 1.38812 * 119.99792 * 151.86261 * 19 18 17 22 22 N 1.31617 * 120.00027 * 335.53857 * 21 19 18 23 23 Si 1.86804 * 119.99914 * 155.54016 * 21 19 18 24 24 H 1.48495 * 109.46946 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.46854 * 299.99907 * 23 21 19 26 26 H 1.48495 * 109.47190 * 59.99880 * 23 21 19 27 27 C 1.46925 * 118.87513 * 306.02317 * 18 17 16 28 28 C 1.52274 * 110.20411 * 153.22096 * 5 4 2 29 29 H 1.08996 * 109.47444 * 299.25278 * 1 2 3 30 30 H 1.09008 * 109.47344 * 59.24891 * 1 2 3 31 31 H 1.08996 * 109.47614 * 179.25091 * 1 2 3 32 32 H 1.09004 * 111.01471 * 86.70299 * 4 2 1 33 33 H 1.09003 * 111.01055 * 322.83093 * 4 2 1 34 34 H 1.08996 * 109.91008 * 97.82493 * 6 5 4 35 35 H 1.09004 * 109.90242 * 219.09331 * 6 5 4 36 36 H 1.09007 * 109.46992 * 299.99245 * 10 8 7 37 37 H 1.08999 * 109.47797 * 59.99421 * 10 8 7 38 38 H 1.08996 * 109.47139 * 299.99322 * 11 10 8 39 39 H 1.08995 * 109.47410 * 59.99615 * 11 10 8 40 40 H 1.08998 * 109.47512 * 299.99773 * 12 11 10 41 41 H 1.09005 * 109.47369 * 60.00286 * 12 11 10 42 42 H 0.97009 * 120.00017 * 0.02562 * 14 13 12 43 43 H 0.97000 * 120.00081 * 179.97438 * 14 13 12 44 44 H 1.09011 * 109.47469 * 57.83108 * 16 5 4 45 45 H 1.08996 * 109.48181 * 297.80256 * 16 5 4 46 46 H 1.09001 * 109.60304 * 293.74712 * 17 16 5 47 47 H 1.09001 * 109.72737 * 173.35595 * 17 16 5 48 48 H 0.96998 * 120.00061 * 354.24928 * 22 21 19 49 49 H 1.09000 * 109.59599 * 173.75144 * 27 18 17 50 50 H 1.08999 * 109.59591 * 294.21231 * 27 18 17 51 51 H 1.09003 * 109.48158 * 302.17412 * 28 5 4 52 52 H 1.08997 * 109.47917 * 62.19830 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9084 1.0222 0.0000 4 6 2.0691 -0.7770 -1.2283 5 6 3.4655 -1.2122 -0.7299 6 6 3.2490 -1.4785 0.7683 7 7 2.0429 -0.7369 1.1700 8 6 1.4978 -0.7318 2.4026 9 8 0.4982 -0.0807 2.6210 10 6 2.1304 -1.5353 3.5095 11 6 1.3215 -1.3564 4.7959 12 6 1.9634 -2.1727 5.9196 13 6 1.1671 -1.9960 7.1868 14 7 1.5487 -2.6254 8.3158 15 8 0.1834 -1.2867 7.1909 16 6 4.4713 -0.0876 -0.9355 17 6 5.8363 -0.5176 -0.3857 18 7 6.2053 -1.8033 -0.9936 19 6 7.4034 -1.9493 -1.6405 20 1 7.8722 -1.0959 -2.1079 21 6 8.0153 -3.1940 -1.6956 22 7 7.7499 -4.0990 -0.7775 23 14 9.2155 -3.5847 -3.0726 24 1 9.7264 -4.9690 -2.9061 25 1 8.5230 -3.4672 -4.3810 26 1 10.3508 -2.6286 -3.0259 27 6 5.2644 -2.9279 -0.9011 28 6 3.9055 -2.4839 -1.4427 29 1 -0.3634 0.5022 0.8966 30 1 -0.3634 0.5255 -0.8832 31 1 -0.3634 -1.0275 -0.0134 32 1 2.1503 -0.1254 -2.0983 33 1 1.4449 -1.6433 -1.4476 34 1 3.1028 -2.5451 0.9384 35 1 4.1092 -1.1238 1.3363 36 1 2.1433 -2.5893 3.2317 37 1 3.1513 -1.1898 3.6717 38 1 1.3089 -0.3025 5.0736 39 1 0.3004 -1.7017 4.6341 40 1 1.9757 -3.2266 5.6418 41 1 2.9846 -1.8277 6.0816 42 1 2.3362 -3.1919 8.3128 43 1 1.0364 -2.5114 9.1315 44 1 4.1318 0.8044 -0.4086 45 1 4.5602 0.1305 -1.9997 46 1 5.7758 -0.6290 0.6969 47 1 6.5862 0.2332 -0.6346 48 1 7.1927 -3.8697 -0.0173 49 1 5.6361 -3.7651 -1.4918 50 1 5.1584 -3.2311 0.1405 51 1 3.1700 -3.2698 -1.2711 52 1 3.9885 -2.2909 -2.5122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689026109.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:11 Heat of formation + Delta-G solvation = -73.127506 kcal Electronic energy + Delta-G solvation = -30608.911890 eV Core-core repulsion = 26607.808725 eV Total energy + Delta-G solvation = -4001.103165 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.67313 -39.74232 -38.64292 -36.23330 -34.42251 -33.91876 -33.32361 -31.95948 -30.97272 -29.99840 -28.60238 -27.14115 -25.69759 -24.30205 -23.41553 -22.53343 -21.56346 -20.69381 -20.40996 -19.13146 -18.26650 -17.65497 -17.28914 -16.85227 -16.70330 -16.38019 -15.87628 -15.15147 -14.67358 -14.49347 -14.38959 -13.96088 -13.83081 -13.63291 -13.55890 -13.44260 -13.29647 -12.88683 -12.62519 -12.32761 -12.21265 -12.11364 -11.88366 -11.77571 -11.69801 -11.55338 -11.27917 -11.18084 -10.94131 -10.86726 -10.73120 -10.47903 -10.30789 -10.23881 -10.06221 -10.00038 -9.89355 -9.73750 -9.43315 -9.27006 -8.53751 -8.41645 -6.92197 -6.11087 -3.28419 2.38343 2.70762 2.96355 3.29902 3.46347 3.49445 3.67232 4.37528 4.52791 4.55078 4.61433 4.75604 4.77782 4.91041 4.92409 5.15116 5.18279 5.21714 5.27474 5.32549 5.35026 5.39637 5.46364 5.49866 5.58841 5.68142 5.75338 5.82218 5.87513 5.90020 5.96247 5.98700 6.12298 6.17257 6.19398 6.25569 6.29879 6.41383 6.45912 6.50026 6.51483 6.57735 6.68793 6.75004 7.00115 7.00584 7.12514 7.62794 7.96606 7.98162 8.26060 8.53408 9.07091 9.79816 10.24055 11.17092 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012008 B = 0.002833 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.156234 B = 9881.947939 C =11725.902142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.135 3.865 3 H 0.072 0.928 4 C -0.123 4.123 5 C -0.055 4.055 6 C 0.109 3.891 7 N -0.614 5.614 8 C 0.529 3.471 9 O -0.542 6.542 10 C -0.139 4.139 11 C -0.088 4.088 12 C -0.144 4.144 13 C 0.515 3.485 14 N -0.861 5.861 15 O -0.540 6.540 16 C -0.120 4.120 17 C 0.147 3.853 18 N -0.597 5.597 19 C -0.348 4.348 20 H 0.055 0.945 21 C -0.023 4.023 22 N -0.916 5.916 23 Si 1.063 2.937 24 H -0.286 1.286 25 H -0.294 1.294 26 H -0.293 1.293 27 C 0.150 3.850 28 C -0.121 4.121 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.402 0.598 43 H 0.399 0.601 44 H 0.052 0.948 45 H 0.064 0.936 46 H 0.016 0.984 47 H 0.055 0.945 48 H 0.268 0.732 49 H 0.080 0.920 50 H 0.016 0.984 51 H 0.053 0.947 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.827 2.307 9.609 14.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.033 3.967 3 H 0.090 0.910 4 C -0.161 4.161 5 C -0.055 4.055 6 C -0.013 4.013 7 N -0.349 5.349 8 C 0.318 3.682 9 O -0.420 6.420 10 C -0.179 4.179 11 C -0.126 4.126 12 C -0.184 4.184 13 C 0.301 3.699 14 N -0.424 5.424 15 O -0.416 6.416 16 C -0.159 4.159 17 C 0.021 3.979 18 N -0.321 5.321 19 C -0.478 4.478 20 H 0.072 0.928 21 C -0.225 4.225 22 N -0.556 5.556 23 Si 0.893 3.107 24 H -0.211 1.211 25 H -0.221 1.221 26 H -0.220 1.220 27 C 0.024 3.976 28 C -0.161 4.161 29 H 0.104 0.896 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.230 0.770 43 H 0.230 0.770 44 H 0.071 0.929 45 H 0.082 0.918 46 H 0.034 0.966 47 H 0.074 0.926 48 H 0.079 0.921 49 H 0.098 0.902 50 H 0.034 0.966 51 H 0.072 0.928 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.006 1.950 8.941 14.313 hybrid contribution -0.524 0.908 0.960 1.421 sum -11.530 2.858 9.901 15.464 Atomic orbital electron populations 1.22166 0.94240 1.02396 1.03305 1.21899 0.94708 0.95476 0.84658 0.90983 1.22972 0.96246 1.00162 0.96745 1.20922 0.94239 0.97448 0.92926 1.22241 0.86692 0.96108 0.96299 1.48737 1.28560 1.48413 1.09140 1.20251 0.83917 0.81860 0.82151 1.90641 1.25564 1.44014 1.81819 1.21687 1.01051 1.01250 0.93936 1.21062 0.99390 1.01334 0.90803 1.21720 1.00485 1.03204 0.93027 1.20782 0.84932 0.78692 0.85545 1.43945 1.33346 1.52296 1.12849 1.90777 1.27189 1.38200 1.85450 1.21919 0.96648 0.95746 1.01578 1.20942 0.93219 0.89403 0.94349 1.44081 1.16641 1.07268 1.64123 1.19966 0.98550 0.98075 1.31160 0.92752 1.25816 1.00412 0.94337 1.01955 1.70793 1.37659 1.37698 1.09471 0.83553 0.75628 0.76022 0.75546 1.21109 1.22079 1.22009 1.20895 0.87166 0.92080 0.97447 1.21927 0.99249 0.94641 1.00279 0.89629 0.92397 0.92915 0.90104 0.90768 0.91368 0.90688 0.88858 0.88801 0.90426 0.90453 0.88537 0.88513 0.77012 0.77032 0.92947 0.91765 0.96630 0.92618 0.92093 0.90197 0.96599 0.92843 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 8.71 37.15 0.32 -1.75 16 2 C 0.14 1.77 3.44 -66.33 -0.23 1.54 16 3 H 0.07 0.95 7.76 -51.93 -0.40 0.55 16 4 C -0.12 -1.55 5.41 -24.87 -0.13 -1.68 16 5 C -0.05 -0.80 0.53 -154.09 -0.08 -0.88 16 6 C 0.11 1.50 4.69 -3.31 -0.02 1.49 16 7 N -0.61 -8.36 3.25 -163.20 -0.53 -8.89 16 8 C 0.53 7.43 7.63 -10.99 -0.08 7.35 16 9 O -0.54 -9.19 13.65 5.56 0.08 -9.11 16 10 C -0.14 -1.47 4.89 -27.88 -0.14 -1.61 16 11 C -0.09 -0.96 3.79 -26.73 -0.10 -1.06 16 12 C -0.14 -1.10 5.70 -27.88 -0.16 -1.26 16 13 C 0.52 4.97 8.10 -10.99 -0.09 4.88 16 14 N -0.86 -4.82 8.87 31.22 0.28 -4.54 16 15 O -0.54 -7.91 16.82 5.56 0.09 -7.82 16 16 C -0.12 -1.89 4.78 -26.94 -0.13 -2.02 16 17 C 0.15 2.84 6.23 -3.65 -0.02 2.81 16 18 N -0.60 -13.81 2.84 -172.43 -0.49 -14.30 16 19 C -0.35 -9.24 9.48 -15.06 -0.14 -9.38 16 20 H 0.05 1.46 7.94 -52.49 -0.42 1.05 16 21 C -0.02 -0.63 4.69 -17.43 -0.08 -0.71 16 22 N -0.92 -26.10 12.41 55.49 0.69 -25.42 16 23 Si 1.06 24.32 29.98 -169.99 -5.10 19.22 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 26 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 27 C 0.15 3.17 4.39 -3.87 -0.02 3.15 16 28 C -0.12 -2.03 4.69 -27.16 -0.13 -2.16 16 29 H 0.08 1.26 5.89 -51.93 -0.31 0.96 16 30 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.95 8.01 -51.93 -0.42 0.53 16 33 H 0.07 0.91 7.92 -51.93 -0.41 0.50 16 34 H 0.07 0.92 7.59 -51.93 -0.39 0.53 16 35 H 0.07 1.09 6.07 -51.93 -0.32 0.77 16 36 H 0.09 0.85 8.14 -51.92 -0.42 0.43 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 1.00 8.06 -51.93 -0.42 0.58 16 39 H 0.08 0.99 8.06 -51.93 -0.42 0.57 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.40 1.03 8.83 -40.82 -0.36 0.67 16 43 H 0.40 1.98 8.93 -40.82 -0.36 1.61 16 44 H 0.05 0.75 7.49 -51.92 -0.39 0.36 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.02 0.30 6.53 -51.93 -0.34 -0.04 16 47 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 48 H 0.27 7.62 6.71 -40.82 -0.27 7.35 16 49 H 0.08 1.96 6.29 -51.93 -0.33 1.63 16 50 H 0.02 0.34 7.21 -51.93 -0.37 -0.04 16 51 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 52 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 396.75 15.07 5.98 5.98 Total: -1.00 -33.79 396.75 -9.17 -42.95 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -8.94 Total: 3.21 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -1.23 Total: -1.29 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -0.05 Total: -53.14 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: 0.17 Total: -16.93 kcal Atomic # 14 Polarization: 24.32 SS G_CDS: -5.10 Total: 19.22 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.79 -9.17 -42.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689026109.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.174 kcal (2) G-P(sol) polarization free energy of solvation -33.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds