Wall clock time and date at job start Tue Mar 31 2020 22:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.49150 * 2 1 4 4 C 1.53039 * 109.52483 * 239.91398 * 2 1 3 5 5 C 1.53035 * 109.54042 * 301.39620 * 4 2 1 6 6 C 1.53196 * 109.31361 * 298.63644 * 5 4 2 7 7 N 1.46919 * 108.77363 * 54.63254 * 6 5 4 8 8 C 1.34780 * 120.63115 * 126.37366 * 7 6 5 9 9 O 1.21270 * 120.00441 * 185.09894 * 8 7 6 10 10 C 1.50703 * 119.99573 * 5.09885 * 8 7 6 11 11 H 1.09000 * 115.54910 * 292.65498 * 10 8 7 12 12 C 1.53000 * 117.50077 * 78.32379 * 10 8 7 13 13 C 1.52996 * 60.00009 * 107.48902 * 12 10 8 14 14 H 1.08995 * 117.49935 * 107.49520 * 13 12 10 15 15 C 1.50705 * 117.49800 * 252.51347 * 13 12 10 16 16 N 1.34776 * 120.00056 * 155.33525 * 15 13 12 17 17 O 1.21284 * 119.99918 * 335.33093 * 15 13 12 18 18 C 1.46926 * 118.74291 * 306.38954 * 7 6 5 19 19 H 1.08993 * 109.70931 * 293.75800 * 18 7 6 20 20 C 1.53003 * 109.58779 * 173.39759 * 18 7 6 21 21 C 1.53004 * 109.47065 * 179.78812 * 20 18 7 22 22 C 1.52998 * 109.46848 * 186.27851 * 21 20 18 23 23 N 1.46500 * 109.46726 * 180.02562 * 22 21 20 24 24 C 1.36944 * 119.99942 * 180.02562 * 23 22 21 25 25 H 1.08003 * 119.99507 * 359.97438 * 24 23 22 26 26 C 1.38807 * 119.99814 * 180.02562 * 24 23 22 27 27 N 1.31612 * 120.00494 * 359.97438 * 26 24 23 28 28 Si 1.86807 * 119.99723 * 180.02562 * 26 24 23 29 29 H 1.48504 * 109.47226 * 359.97438 * 28 26 24 30 30 H 1.48497 * 109.47284 * 119.99617 * 28 26 24 31 31 H 1.48500 * 109.46791 * 239.99899 * 28 26 24 32 32 H 1.08994 * 109.47221 * 299.93417 * 1 2 3 33 33 H 1.08993 * 109.47047 * 59.94124 * 1 2 3 34 34 H 1.09007 * 109.46504 * 179.97438 * 1 2 3 35 35 H 1.09008 * 109.45751 * 61.41929 * 4 2 1 36 36 H 1.09001 * 109.45960 * 181.38811 * 4 2 1 37 37 H 1.09003 * 109.49604 * 58.58575 * 5 4 2 38 38 H 1.08997 * 109.49679 * 178.68241 * 5 4 2 39 39 H 1.08997 * 109.58453 * 174.42304 * 6 5 4 40 40 H 1.09006 * 109.58191 * 294.84568 * 6 5 4 41 41 H 1.09000 * 117.50361 * 214.98090 * 12 10 8 42 42 H 1.09001 * 117.49748 * 359.97438 * 12 10 8 43 43 H 0.97003 * 120.00125 * 359.97438 * 16 15 13 44 44 H 0.96994 * 119.99894 * 179.97438 * 16 15 13 45 45 H 1.09002 * 109.47117 * 299.78718 * 20 18 7 46 46 H 1.08996 * 109.47292 * 59.78679 * 20 18 7 47 47 H 1.09000 * 109.46615 * 306.27781 * 21 20 18 48 48 H 1.08997 * 109.46901 * 66.27729 * 21 20 18 49 49 H 1.09004 * 109.47236 * 299.99856 * 22 21 20 50 50 H 1.08997 * 109.47469 * 60.00226 * 22 21 20 51 51 H 0.96999 * 120.00065 * 359.97438 * 23 22 21 52 52 H 0.97004 * 120.00607 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0416 -0.7231 -1.2481 5 6 1.5045 -2.1560 -1.2656 6 6 2.0155 -2.9038 -0.0301 7 7 1.6523 -2.1379 1.1699 8 6 0.9748 -2.7217 2.1782 9 8 0.6001 -2.0579 3.1214 10 6 0.6828 -4.1995 2.1335 11 1 -0.0129 -4.5179 1.3572 12 6 1.8202 -5.1557 2.4982 13 6 0.6510 -4.9539 3.4642 14 1 -0.0660 -5.7688 3.5637 15 6 0.9140 -4.1623 4.7193 16 7 -0.1004 -3.5306 5.3426 17 8 2.0385 -4.0937 5.1685 18 6 2.0414 -0.7234 1.2499 19 1 3.1272 -0.6430 1.2999 20 6 1.4223 -0.0908 2.4979 21 6 1.8334 1.3806 2.5814 22 6 1.3463 1.9718 3.9058 23 7 1.7394 3.3808 3.9854 24 6 1.4107 4.1221 5.0889 25 1 0.8612 3.6680 5.9003 26 6 1.7827 5.4573 5.1641 27 7 2.4519 6.0107 4.1751 28 14 1.3348 6.4683 6.6697 29 1 0.5885 5.6188 7.6323 30 1 2.5740 6.9743 7.3128 31 1 0.4853 7.6156 6.2607 32 1 -0.3633 0.5128 0.8905 33 1 -0.3633 0.5147 -0.8894 34 1 -0.3632 -1.0278 -0.0005 35 1 1.6995 -0.1960 -2.1388 36 1 3.1313 -0.7440 -1.2346 37 1 0.4147 -2.1362 -1.2540 38 1 1.8501 -2.6630 -2.1665 39 1 1.5574 -3.8918 0.0144 40 1 3.0996 -3.0035 -0.0858 41 1 1.8725 -6.1034 1.9622 42 1 2.7797 -4.7159 2.7701 43 1 -0.9997 -3.5852 4.9831 44 1 0.0688 -3.0214 6.1506 45 1 0.3361 -0.1619 2.4405 46 1 1.7745 -0.6173 3.3849 47 1 2.9193 1.4580 2.5264 48 1 1.3875 1.9300 1.7523 49 1 0.2604 1.8943 3.9608 50 1 1.7922 1.4224 4.7348 51 1 2.2333 3.7885 3.2568 52 1 2.7122 6.9437 4.2278 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691407368.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:51 Heat of formation + Delta-G solvation = -33.127179 kcal Electronic energy + Delta-G solvation = -31082.824757 eV Core-core repulsion = 27083.456137 eV Total energy + Delta-G solvation = -3999.368620 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.22074 -39.69624 -37.88614 -36.32819 -35.44432 -33.85131 -33.50026 -33.21252 -31.42077 -29.53874 -27.49871 -26.35124 -25.21178 -24.49067 -23.83237 -23.10308 -21.56719 -20.76404 -20.44670 -19.65573 -18.64799 -17.58891 -17.04245 -16.90106 -16.44868 -16.20575 -15.82432 -15.44828 -14.85573 -14.59461 -14.42367 -14.31460 -14.12169 -13.88287 -13.75299 -13.28883 -13.19301 -13.15958 -13.08463 -12.60179 -12.42807 -12.10713 -11.81054 -11.75030 -11.48680 -11.20338 -11.05729 -10.99395 -10.98436 -10.82128 -10.75123 -10.72659 -10.57752 -10.27976 -10.02306 -10.00417 -9.86576 -9.57989 -9.56499 -8.95575 -8.76168 -8.58388 -6.79047 -5.66520 -2.93796 2.41187 2.45016 2.77503 3.22331 3.49806 3.55074 3.57075 3.57796 4.13561 4.29616 4.38137 4.48498 4.62097 4.63462 4.69244 4.76570 4.82585 4.95016 5.02640 5.09695 5.23052 5.25992 5.31869 5.43621 5.46336 5.55181 5.59100 5.62972 5.65248 5.67552 5.73166 5.76098 5.88970 5.99356 6.01135 6.04236 6.23154 6.30764 6.40946 6.50928 6.56868 6.59334 6.82387 6.88487 7.10590 7.12261 7.31365 7.37850 7.80816 8.10407 8.29782 8.53354 9.63854 10.24673 10.59634 11.56956 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011122 B = 0.003147 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.844824 B = 8896.459587 C =10924.751725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 H 0.087 0.913 4 C -0.116 4.116 5 C -0.137 4.137 6 C 0.109 3.891 7 N -0.599 5.599 8 C 0.535 3.465 9 O -0.508 6.508 10 C -0.168 4.168 11 H 0.135 0.865 12 C -0.129 4.129 13 C -0.162 4.162 14 H 0.135 0.865 15 C 0.557 3.443 16 N -0.832 5.832 17 O -0.548 6.548 18 C 0.154 3.846 19 H 0.070 0.930 20 C -0.101 4.101 21 C -0.132 4.132 22 C 0.158 3.842 23 N -0.735 5.735 24 C -0.233 4.233 25 H 0.070 0.930 26 C -0.018 4.018 27 N -0.936 5.936 28 Si 0.906 3.094 29 H -0.281 1.281 30 H -0.292 1.292 31 H -0.292 1.292 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.400 0.600 44 H 0.403 0.597 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.055 0.945 48 H 0.058 0.942 49 H 0.016 0.984 50 H 0.016 0.984 51 H 0.382 0.618 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.259 -27.685 -13.713 31.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.125 4.125 3 H 0.106 0.894 4 C -0.154 4.154 5 C -0.175 4.175 6 C -0.014 4.014 7 N -0.333 5.333 8 C 0.322 3.678 9 O -0.383 6.383 10 C -0.190 4.190 11 H 0.153 0.847 12 C -0.166 4.166 13 C -0.183 4.183 14 H 0.152 0.848 15 C 0.341 3.659 16 N -0.393 5.393 17 O -0.426 6.426 18 C 0.051 3.949 19 H 0.088 0.912 20 C -0.139 4.139 21 C -0.170 4.170 22 C 0.031 3.969 23 N -0.379 5.379 24 C -0.364 4.364 25 H 0.088 0.912 26 C -0.213 4.213 27 N -0.586 5.586 28 Si 0.737 3.263 29 H -0.206 1.206 30 H -0.219 1.219 31 H -0.220 1.220 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.227 0.773 44 H 0.234 0.766 45 H 0.096 0.904 46 H 0.101 0.899 47 H 0.074 0.926 48 H 0.077 0.923 49 H 0.033 0.967 50 H 0.034 0.966 51 H 0.215 0.785 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.754 -27.349 -12.883 30.603 hybrid contribution -0.498 0.925 0.459 1.146 sum -5.252 -26.424 -12.424 29.668 Atomic orbital electron populations 1.21865 0.94803 1.01475 1.02045 1.21567 0.96824 1.00088 0.93977 0.89435 1.21564 1.00526 0.95203 0.98070 1.21968 1.01715 0.96522 0.97314 1.21710 1.00426 0.94914 0.84314 1.47997 1.55975 1.11422 1.17860 1.19570 0.78072 0.87710 0.82429 1.90850 1.50534 1.63000 1.33899 1.22377 1.04870 0.92469 0.99256 0.84743 1.23050 0.93973 1.00040 0.99557 1.22264 1.04568 1.01946 0.89561 0.84750 1.19250 0.84611 0.78317 0.83693 1.43517 1.11187 1.53895 1.30678 1.90748 1.22483 1.62830 1.66524 1.21440 0.98572 0.78538 0.96321 0.91165 1.22086 1.01654 0.94146 0.96051 1.21897 1.00693 0.95357 0.99059 1.20562 0.96419 0.86088 0.93869 1.42418 1.67720 1.05924 1.21833 1.19322 1.28664 0.92119 0.96307 0.91225 1.24727 1.01411 0.97041 0.98170 1.69672 1.44411 1.12540 1.31943 0.86120 0.77510 0.80250 0.82403 1.20580 1.21924 1.21955 0.91679 0.93090 0.92949 0.91646 0.91815 0.91104 0.90955 0.89827 0.91366 0.86944 0.87182 0.77263 0.76640 0.90424 0.89870 0.92618 0.92316 0.96651 0.96586 0.78461 0.93711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.20 37.16 0.30 -1.28 16 2 C -0.11 -1.12 2.31 -90.49 -0.21 -1.33 16 3 H 0.09 1.04 6.92 -51.93 -0.36 0.68 16 4 C -0.12 -0.94 5.43 -26.69 -0.14 -1.08 16 5 C -0.14 -0.87 5.74 -26.61 -0.15 -1.02 16 6 C 0.11 0.73 6.33 -3.71 -0.02 0.71 16 7 N -0.60 -6.02 2.41 -165.22 -0.40 -6.41 16 8 C 0.54 5.98 7.00 -10.98 -0.08 5.90 16 9 O -0.51 -7.31 9.84 5.57 0.05 -7.25 16 10 C -0.17 -1.24 4.28 -91.77 -0.39 -1.63 16 11 H 0.13 0.61 7.94 -51.93 -0.41 0.20 16 12 C -0.13 -0.91 9.68 -26.73 -0.26 -1.17 16 13 C -0.16 -1.29 6.18 -91.77 -0.57 -1.86 16 14 H 0.13 0.66 8.14 -51.93 -0.42 0.23 16 15 C 0.56 6.81 5.78 -10.98 -0.06 6.75 16 16 N -0.83 -8.26 8.08 31.22 0.25 -8.01 16 17 O -0.55 -9.30 17.38 5.55 0.10 -9.21 16 18 C 0.15 1.86 2.71 -67.60 -0.18 1.68 16 19 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 20 C -0.10 -1.57 2.66 -26.73 -0.07 -1.64 16 21 C -0.13 -2.37 4.82 -26.73 -0.13 -2.50 16 22 C 0.16 3.59 6.26 -4.04 -0.03 3.56 16 23 N -0.74 -20.25 5.60 -59.91 -0.34 -20.59 16 24 C -0.23 -6.98 9.99 -15.06 -0.15 -7.13 16 25 H 0.07 2.04 7.83 -52.48 -0.41 1.63 16 26 C -0.02 -0.55 5.50 -17.44 -0.10 -0.65 16 27 N -0.94 -29.59 13.06 55.49 0.72 -28.86 16 28 Si 0.91 23.46 29.55 -169.99 -5.02 18.43 16 29 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 30 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 31 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 32 H 0.06 0.85 6.33 -51.93 -0.33 0.52 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.54 5.97 -51.93 -0.31 0.23 16 35 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.48 6.34 -51.93 -0.33 0.15 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.39 6.19 -51.93 -0.32 0.07 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.11 1.06 7.89 -51.93 -0.41 0.65 16 43 H 0.40 2.89 8.83 -40.82 -0.36 2.53 16 44 H 0.40 4.13 8.93 -40.82 -0.36 3.77 16 45 H 0.08 1.26 5.22 -51.93 -0.27 0.99 16 46 H 0.08 1.50 6.42 -51.93 -0.33 1.17 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 48 H 0.06 1.04 6.94 -51.93 -0.36 0.68 16 49 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.38 10.90 7.67 -40.82 -0.31 10.59 16 52 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 397.41 15.07 5.99 5.99 Total: -1.00 -37.39 397.41 -9.55 -46.94 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -8.67 Total: 11.65 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -2.24 Total: -2.68 kcal Atomic # 7 Polarization: -64.12 SS G_CDS: 0.24 Total: -63.88 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: 0.15 Total: -16.46 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -5.02 Total: 18.43 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.39 -9.55 -46.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691407368.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.813 kcal (2) G-P(sol) polarization free energy of solvation -37.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds