Wall clock time and date at job start Tue Mar 31 2020 22:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.49150 * 2 1 4 4 C 1.53039 * 109.52483 * 239.91398 * 2 1 3 5 5 C 1.53035 * 109.54042 * 301.39620 * 4 2 1 6 6 C 1.53196 * 109.31361 * 298.63644 * 5 4 2 7 7 N 1.46919 * 108.77363 * 54.63254 * 6 5 4 8 8 C 1.34780 * 120.63115 * 126.37366 * 7 6 5 9 9 O 1.21270 * 120.00441 * 185.09894 * 8 7 6 10 10 C 1.50703 * 119.99573 * 5.09885 * 8 7 6 11 11 H 1.09000 * 115.54910 * 292.65498 * 10 8 7 12 12 C 1.53000 * 117.50077 * 78.32379 * 10 8 7 13 13 C 1.52996 * 60.00009 * 107.48902 * 12 10 8 14 14 H 1.08995 * 117.49935 * 107.49520 * 13 12 10 15 15 C 1.50705 * 117.49800 * 252.51347 * 13 12 10 16 16 N 1.34776 * 120.00056 * 155.33525 * 15 13 12 17 17 O 1.21284 * 119.99918 * 335.33093 * 15 13 12 18 18 C 1.46926 * 118.74291 * 306.38954 * 7 6 5 19 19 H 1.08993 * 109.70931 * 293.75800 * 18 7 6 20 20 C 1.53003 * 109.58779 * 173.39759 * 18 7 6 21 21 C 1.53004 * 109.47065 * 179.78812 * 20 18 7 22 22 C 1.52998 * 109.46848 * 186.27851 * 21 20 18 23 23 N 1.46500 * 109.46726 * 180.02562 * 22 21 20 24 24 C 1.36944 * 119.99942 * 180.02562 * 23 22 21 25 25 H 1.08003 * 119.99507 * 359.97438 * 24 23 22 26 26 C 1.38807 * 119.99814 * 180.02562 * 24 23 22 27 27 N 1.31612 * 120.00494 * 359.97438 * 26 24 23 28 28 Si 1.86807 * 119.99723 * 180.02562 * 26 24 23 29 29 H 1.48504 * 109.47226 * 359.97438 * 28 26 24 30 30 H 1.48497 * 109.47284 * 119.99617 * 28 26 24 31 31 H 1.48500 * 109.46791 * 239.99899 * 28 26 24 32 32 H 1.08994 * 109.47221 * 299.93417 * 1 2 3 33 33 H 1.08993 * 109.47047 * 59.94124 * 1 2 3 34 34 H 1.09007 * 109.46504 * 179.97438 * 1 2 3 35 35 H 1.09008 * 109.45751 * 61.41929 * 4 2 1 36 36 H 1.09001 * 109.45960 * 181.38811 * 4 2 1 37 37 H 1.09003 * 109.49604 * 58.58575 * 5 4 2 38 38 H 1.08997 * 109.49679 * 178.68241 * 5 4 2 39 39 H 1.08997 * 109.58453 * 174.42304 * 6 5 4 40 40 H 1.09006 * 109.58191 * 294.84568 * 6 5 4 41 41 H 1.09000 * 117.50361 * 214.98090 * 12 10 8 42 42 H 1.09001 * 117.49748 * 359.97438 * 12 10 8 43 43 H 0.97003 * 120.00125 * 359.97438 * 16 15 13 44 44 H 0.96994 * 119.99894 * 179.97438 * 16 15 13 45 45 H 1.09002 * 109.47117 * 299.78718 * 20 18 7 46 46 H 1.08996 * 109.47292 * 59.78679 * 20 18 7 47 47 H 1.09000 * 109.46615 * 306.27781 * 21 20 18 48 48 H 1.08997 * 109.46901 * 66.27729 * 21 20 18 49 49 H 1.09004 * 109.47236 * 299.99856 * 22 21 20 50 50 H 1.08997 * 109.47469 * 60.00226 * 22 21 20 51 51 H 0.96999 * 120.00065 * 359.97438 * 23 22 21 52 52 H 0.97004 * 120.00607 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0416 -0.7231 -1.2481 5 6 1.5045 -2.1560 -1.2656 6 6 2.0155 -2.9038 -0.0301 7 7 1.6523 -2.1379 1.1699 8 6 0.9748 -2.7217 2.1782 9 8 0.6001 -2.0579 3.1214 10 6 0.6828 -4.1995 2.1335 11 1 -0.0129 -4.5179 1.3572 12 6 1.8202 -5.1557 2.4982 13 6 0.6510 -4.9539 3.4642 14 1 -0.0660 -5.7688 3.5637 15 6 0.9140 -4.1623 4.7193 16 7 -0.1004 -3.5306 5.3426 17 8 2.0385 -4.0937 5.1685 18 6 2.0414 -0.7234 1.2499 19 1 3.1272 -0.6430 1.2999 20 6 1.4223 -0.0908 2.4979 21 6 1.8334 1.3806 2.5814 22 6 1.3463 1.9718 3.9058 23 7 1.7394 3.3808 3.9854 24 6 1.4107 4.1221 5.0889 25 1 0.8612 3.6680 5.9003 26 6 1.7827 5.4573 5.1641 27 7 2.4519 6.0107 4.1751 28 14 1.3348 6.4683 6.6697 29 1 0.5885 5.6188 7.6323 30 1 2.5740 6.9743 7.3128 31 1 0.4853 7.6156 6.2607 32 1 -0.3633 0.5128 0.8905 33 1 -0.3633 0.5147 -0.8894 34 1 -0.3632 -1.0278 -0.0005 35 1 1.6995 -0.1960 -2.1388 36 1 3.1313 -0.7440 -1.2346 37 1 0.4147 -2.1362 -1.2540 38 1 1.8501 -2.6630 -2.1665 39 1 1.5574 -3.8918 0.0144 40 1 3.0996 -3.0035 -0.0858 41 1 1.8725 -6.1034 1.9622 42 1 2.7797 -4.7159 2.7701 43 1 -0.9997 -3.5852 4.9831 44 1 0.0688 -3.0214 6.1506 45 1 0.3361 -0.1619 2.4405 46 1 1.7745 -0.6173 3.3849 47 1 2.9193 1.4580 2.5264 48 1 1.3875 1.9300 1.7523 49 1 0.2604 1.8943 3.9608 50 1 1.7922 1.4224 4.7348 51 1 2.2333 3.7885 3.2568 52 1 2.7122 6.9437 4.2278 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691407368.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:50 Heat of formation + Delta-G solvation = -60.443508 kcal Electronic energy + Delta-G solvation = -31084.009282 eV Core-core repulsion = 27083.456137 eV Total energy + Delta-G solvation = -4000.553145 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.04447 -40.57542 -38.78079 -37.39065 -36.89575 -35.20478 -34.49427 -34.21281 -33.12272 -31.03001 -28.66499 -27.25607 -26.48266 -25.44652 -24.68939 -24.48115 -22.96931 -21.93491 -21.41771 -20.49349 -19.43805 -19.18095 -18.34707 -17.84037 -17.35139 -17.05430 -16.77088 -16.64018 -16.42600 -15.64778 -15.49963 -15.36995 -15.21331 -15.12627 -15.02695 -14.70601 -14.64667 -14.06019 -13.91335 -13.63884 -13.42238 -13.21167 -13.05798 -12.85519 -12.81081 -12.72262 -12.44613 -12.21040 -12.10679 -11.97936 -11.89509 -11.72604 -11.63399 -11.60463 -11.51230 -11.27222 -11.15167 -10.99273 -10.97335 -10.50536 -9.95189 -9.43344 -9.07247 -8.00351 -5.30584 1.42697 1.44905 1.55396 1.60950 1.63812 1.98152 2.51698 2.58273 2.85238 3.32283 3.43122 3.73000 3.74809 3.77040 3.81603 3.93062 3.97403 4.11060 4.17147 4.18998 4.23602 4.29398 4.38039 4.52310 4.58496 4.65310 4.68837 4.70494 4.79134 4.84107 4.86939 4.88255 4.92927 4.98847 5.03965 5.07925 5.10317 5.16095 5.25445 5.26501 5.32296 5.41849 5.44348 5.50073 5.56517 5.77424 5.93635 6.22087 6.53421 6.58426 7.27470 7.28109 7.44005 8.01482 8.28260 9.23582 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011122 B = 0.003147 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.844824 B = 8896.459587 C =10924.751725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.103 4.103 3 H 0.069 0.931 4 C -0.114 4.114 5 C -0.130 4.130 6 C 0.103 3.897 7 N -0.598 5.598 8 C 0.519 3.481 9 O -0.551 6.551 10 C -0.154 4.154 11 H 0.178 0.822 12 C -0.119 4.119 13 C -0.169 4.169 14 H 0.175 0.825 15 C 0.544 3.456 16 N -0.824 5.824 17 O -0.610 6.610 18 C 0.157 3.843 19 H 0.062 0.938 20 C -0.079 4.079 21 C -0.116 4.116 22 C 0.160 3.840 23 N -0.746 5.746 24 C -0.253 4.253 25 H 0.070 0.930 26 C -0.075 4.075 27 N -0.969 5.969 28 Si 0.978 3.022 29 H -0.268 1.268 30 H -0.289 1.289 31 H -0.287 1.287 32 H 0.035 0.965 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.073 0.927 41 H 0.156 0.844 42 H 0.076 0.924 43 H 0.413 0.587 44 H 0.397 0.603 45 H 0.070 0.930 46 H 0.053 0.947 47 H 0.050 0.950 48 H 0.062 0.938 49 H 0.012 0.988 50 H 0.003 0.997 51 H 0.374 0.626 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.459 -30.173 -15.807 34.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.122 4.122 3 H 0.087 0.913 4 C -0.151 4.151 5 C -0.168 4.168 6 C -0.018 4.018 7 N -0.330 5.330 8 C 0.308 3.692 9 O -0.430 6.430 10 C -0.174 4.174 11 H 0.196 0.804 12 C -0.157 4.157 13 C -0.190 4.190 14 H 0.192 0.808 15 C 0.330 3.670 16 N -0.383 5.383 17 O -0.492 6.492 18 C 0.053 3.947 19 H 0.080 0.920 20 C -0.117 4.117 21 C -0.155 4.155 22 C 0.034 3.966 23 N -0.389 5.389 24 C -0.385 4.385 25 H 0.088 0.912 26 C -0.267 4.267 27 N -0.619 5.619 28 Si 0.806 3.194 29 H -0.193 1.193 30 H -0.216 1.216 31 H -0.213 1.213 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.118 0.882 39 H 0.133 0.867 40 H 0.092 0.908 41 H 0.174 0.826 42 H 0.095 0.905 43 H 0.243 0.757 44 H 0.227 0.773 45 H 0.089 0.911 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.081 0.919 49 H 0.030 0.970 50 H 0.021 0.979 51 H 0.206 0.794 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.001 -29.882 -15.013 33.976 hybrid contribution -0.124 1.716 1.144 2.066 sum -6.125 -28.166 -13.869 31.987 Atomic orbital electron populations 1.21797 0.94818 1.01855 1.01062 1.21514 0.96691 0.99330 0.94688 0.91297 1.21555 1.00674 0.96422 0.96478 1.21954 1.01637 0.95098 0.98138 1.22037 1.01202 0.95834 0.82746 1.48081 1.55413 1.10465 1.19035 1.20389 0.77487 0.89537 0.81835 1.90832 1.52333 1.64438 1.35379 1.22416 1.05843 0.89418 0.99771 0.80440 1.23153 0.92120 1.01337 0.99049 1.22408 1.06458 1.02553 0.87548 0.80770 1.20118 0.83853 0.78168 0.84822 1.43543 1.11754 1.52811 1.30215 1.90709 1.24806 1.65204 1.68481 1.21184 0.97798 0.80459 0.95232 0.91966 1.21790 1.01164 0.91859 0.96892 1.21758 1.00113 0.97154 0.96444 1.20647 0.95993 0.84021 0.95971 1.42607 1.67699 1.07471 1.21126 1.19682 1.28844 0.92909 0.97039 0.91190 1.25636 1.01473 0.98112 1.01461 1.69827 1.45353 1.12820 1.33928 0.85007 0.77260 0.78392 0.78692 1.19290 1.21581 1.21347 0.94566 0.92074 0.91851 0.90866 0.91639 0.91048 0.88232 0.86740 0.90845 0.82641 0.90493 0.75650 0.77306 0.91140 0.92815 0.93117 0.91886 0.97015 0.97929 0.79386 0.93757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.20 71.98 0.59 -2.33 16 2 C -0.10 -2.15 2.31 -10.71 -0.02 -2.18 16 3 H 0.07 1.68 6.92 -2.39 -0.02 1.66 16 4 C -0.11 -1.58 5.43 30.62 0.17 -1.42 16 5 C -0.13 -1.15 5.74 30.67 0.18 -0.97 16 6 C 0.10 1.02 6.33 86.37 0.55 1.57 16 7 N -0.60 -11.22 2.41 -795.03 -1.92 -13.14 16 8 C 0.52 11.07 7.00 87.66 0.61 11.68 16 9 O -0.55 -16.35 9.84 -3.00 -0.03 -16.38 16 10 C -0.15 -1.74 4.28 -11.54 -0.05 -1.79 16 11 H 0.18 0.54 7.94 -2.39 -0.02 0.52 16 12 C -0.12 -1.31 9.68 30.59 0.30 -1.02 16 13 C -0.17 -2.28 6.18 -11.54 -0.07 -2.35 16 14 H 0.18 0.93 8.14 -2.39 -0.02 0.91 16 15 C 0.54 13.49 5.78 87.66 0.51 13.99 16 16 N -0.82 -16.88 8.08 -173.53 -1.40 -18.28 16 17 O -0.61 -21.87 17.38 -3.04 -0.05 -21.92 16 18 C 0.16 3.85 2.71 44.98 0.12 3.98 16 19 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 20 C -0.08 -2.59 2.66 30.60 0.08 -2.50 16 21 C -0.12 -4.44 4.82 30.59 0.15 -4.29 16 22 C 0.16 7.68 6.26 86.38 0.54 8.22 16 23 N -0.75 -42.75 5.60 -343.45 -1.92 -44.67 16 24 C -0.25 -15.55 9.99 84.03 0.84 -14.71 16 25 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 26 C -0.07 -4.57 5.50 84.86 0.47 -4.10 16 27 N -0.97 -62.25 13.06 21.65 0.28 -61.97 16 28 Si 0.98 48.71 29.55 68.60 2.03 50.74 16 29 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 30 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 31 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 32 H 0.04 0.96 6.33 -2.39 -0.02 0.95 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 1.19 5.97 -2.38 -0.01 1.17 16 35 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.07 0.67 6.34 -2.39 -0.02 0.65 16 38 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.11 0.46 6.19 -2.39 -0.01 0.45 16 40 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 41 H 0.16 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.08 1.43 7.89 -2.39 -0.02 1.41 16 43 H 0.41 5.86 8.83 -92.71 -0.82 5.04 16 44 H 0.40 8.81 8.93 -92.71 -0.83 7.98 16 45 H 0.07 2.42 5.22 -2.39 -0.01 2.40 16 46 H 0.05 2.09 6.42 -2.39 -0.02 2.08 16 47 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.06 2.34 6.94 -2.39 -0.02 2.33 16 49 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 50 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 51 H 0.37 22.24 7.67 -92.71 -0.71 21.53 16 52 H 0.25 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -86.44 397.41 0.53 -85.91 By element: Atomic # 1 Polarization: 39.34 SS G_CDS: -1.40 Total: 37.94 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 4.95 Total: 1.78 kcal Atomic # 7 Polarization: -133.11 SS G_CDS: -4.96 Total: -138.07 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -0.08 Total: -38.30 kcal Atomic # 14 Polarization: 48.71 SS G_CDS: 2.03 Total: 50.74 kcal Total: -86.44 0.53 -85.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691407368.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.467 kcal (2) G-P(sol) polarization free energy of solvation -86.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds