Wall clock time and date at job start Tue Mar 31 2020 20:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21282 * 119.99567 * 2 1 4 4 N 1.34776 * 120.00251 * 180.02562 * 2 1 3 5 5 C 1.46499 * 119.99836 * 179.97438 * 4 2 1 6 6 H 1.08995 * 109.47643 * 34.99550 * 5 4 2 7 7 C 1.52998 * 109.47042 * 274.99302 * 5 4 2 8 8 C 1.50703 * 109.47069 * 154.99815 * 5 4 2 9 9 O 1.21288 * 119.99780 * 5.71833 * 8 5 4 10 10 N 1.34774 * 120.00152 * 185.72130 * 8 5 4 11 11 C 1.47574 * 125.63104 * 3.61411 * 10 8 5 12 12 C 1.54135 * 104.87700 * 203.35072 * 11 10 8 13 13 C 1.54365 * 102.48205 * 323.85828 * 12 11 10 14 14 C 1.47355 * 125.77824 * 183.61115 * 10 8 5 15 15 H 1.08998 * 109.84713 * 59.55455 * 14 10 8 16 16 C 1.52998 * 109.99315 * 298.50235 * 14 10 8 17 17 C 1.52110 * 110.64690 * 205.95818 * 12 11 10 18 18 C 1.53341 * 109.44332 * 295.63049 * 17 12 11 19 19 N 1.46926 * 108.69034 * 306.70164 * 18 17 12 20 20 C 1.36936 * 120.54990 * 234.36905 * 19 18 17 21 21 H 1.07999 * 120.00261 * 31.08395 * 20 19 18 22 22 C 1.38818 * 119.99848 * 211.08613 * 20 19 18 23 23 N 1.31623 * 119.99953 * 11.60286 * 22 20 19 24 24 Si 1.86796 * 120.00293 * 191.60670 * 22 20 19 25 25 H 1.48508 * 109.47200 * 59.99734 * 24 22 20 26 26 H 1.48493 * 109.47419 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47041 * 300.00104 * 24 22 20 28 28 C 1.46934 * 118.89599 * 54.34680 * 19 18 17 29 29 C 1.52114 * 110.65136 * 81.74023 * 12 11 10 30 30 H 1.08997 * 109.46879 * 269.99269 * 1 2 3 31 31 H 1.08999 * 109.47646 * 29.99731 * 1 2 3 32 32 H 1.09003 * 109.47014 * 149.99960 * 1 2 3 33 33 H 0.97001 * 120.00188 * 359.97438 * 4 2 1 34 34 H 1.09000 * 109.47362 * 307.90181 * 7 5 4 35 35 H 1.09002 * 109.47246 * 67.90470 * 7 5 4 36 36 H 1.09001 * 109.47343 * 187.90465 * 7 5 4 37 37 H 1.08993 * 110.37684 * 84.46380 * 11 10 8 38 38 H 1.09004 * 110.37149 * 322.23014 * 11 10 8 39 39 H 1.08994 * 110.73341 * 152.98997 * 13 12 11 40 40 H 1.08993 * 110.73492 * 276.30314 * 13 12 11 41 41 H 1.09000 * 109.47209 * 302.04687 * 16 14 10 42 42 H 1.08999 * 109.47480 * 62.04683 * 16 14 10 43 43 H 1.09005 * 109.46973 * 182.05012 * 16 14 10 44 44 H 1.08997 * 109.47065 * 55.62632 * 17 12 11 45 45 H 1.09004 * 109.47329 * 175.63933 * 17 12 11 46 46 H 1.09008 * 109.59382 * 186.94272 * 18 17 12 47 47 H 1.08999 * 109.73062 * 66.54831 * 18 17 12 48 48 H 0.96996 * 119.99834 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.60178 * 185.89061 * 28 19 18 50 50 H 1.08999 * 109.60320 * 65.40843 * 28 19 18 51 51 H 1.08994 * 109.47977 * 184.35505 * 29 12 11 52 52 H 1.08999 * 109.47143 * 304.36792 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 1 4.0095 -0.3254 0.5883 7 6 4.1553 -1.0412 -1.4383 8 6 4.1486 -2.4549 0.5989 9 8 3.3655 -3.3331 0.8931 10 7 5.4682 -2.6306 0.8088 11 6 6.5187 -1.6222 0.5691 12 6 7.8121 -2.4371 0.3725 13 6 7.6261 -3.6032 1.3668 14 6 6.1038 -3.8598 1.3152 15 1 5.8906 -4.6908 0.6428 16 6 5.5822 -4.1788 2.7177 17 6 9.0310 -1.6067 0.7447 18 6 9.1512 -0.4176 -0.2159 19 7 9.1335 -0.9230 -1.5954 20 6 10.1396 -0.6022 -2.4672 21 1 11.1410 -0.4360 -2.0986 22 6 9.8722 -0.4905 -3.8248 23 7 8.6270 -0.4651 -4.2504 24 14 11.2797 -0.3764 -5.0477 25 1 12.1229 -1.5947 -4.9471 26 1 10.7322 -0.2661 -6.4236 27 1 12.1030 0.8218 -4.7444 28 6 8.0186 -1.7789 -2.0238 29 6 7.9051 -2.9603 -1.0528 30 1 -0.3633 -0.0001 1.0276 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5139 33 1 1.6960 -2.0073 -0.0005 34 1 3.6811 -1.8007 -2.0598 35 1 3.9118 -0.0515 -1.8247 36 1 5.2361 -1.1816 -1.4543 37 1 6.6137 -0.9611 1.4305 38 1 6.2934 -1.0454 -0.3280 39 1 8.1773 -4.4836 1.0364 40 1 7.9339 -3.3079 2.3698 41 1 5.7828 -3.3367 3.3802 42 1 4.5081 -4.3586 2.6738 43 1 6.0843 -5.0682 3.0985 44 1 8.9229 -1.2400 1.7654 45 1 9.9267 -2.2238 0.6731 46 1 10.0879 0.1084 -0.0312 47 1 8.3136 0.2634 -0.0652 48 1 8.4402 -0.3867 -5.1990 49 1 8.2086 -2.1502 -3.0308 50 1 7.0918 -1.2053 -2.0118 51 1 8.7849 -3.5964 -1.1498 52 1 7.0111 -3.5385 -1.2867 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691957749.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:00 Heat of formation + Delta-G solvation = -52.244694 kcal Electronic energy + Delta-G solvation = -31852.642350 eV Core-core repulsion = 27852.444732 eV Total energy + Delta-G solvation = -4000.197618 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -40.89300 -39.68954 -38.42303 -36.11864 -34.99864 -33.21168 -32.49104 -30.92610 -30.80498 -30.01691 -28.82692 -27.25796 -26.01937 -24.69256 -24.00265 -22.46432 -21.74853 -20.87503 -20.39993 -19.27449 -18.27379 -17.49074 -16.90735 -16.33154 -16.22423 -15.78110 -15.35497 -14.96317 -14.54820 -14.44423 -14.13433 -13.97068 -13.78994 -13.50332 -13.32917 -13.16060 -12.94941 -12.79735 -12.76128 -12.60385 -12.34536 -12.21344 -12.16555 -11.80862 -11.66229 -11.55145 -11.43986 -11.21027 -10.98868 -10.85719 -10.75241 -10.48314 -10.26862 -10.22268 -10.00968 -9.91613 -9.69297 -9.56027 -9.43426 -9.20836 -8.59410 -8.48774 -6.64146 -5.81020 -3.28285 2.49937 2.58281 2.71820 3.32839 3.36435 3.42428 3.42853 4.32278 4.46731 4.64439 4.69031 4.81528 4.93746 5.03997 5.10138 5.14335 5.22710 5.23582 5.28490 5.36706 5.38549 5.50592 5.55672 5.59258 5.63724 5.72122 5.74946 5.84926 5.87968 5.93861 6.00606 6.04028 6.08928 6.23075 6.24640 6.27938 6.32977 6.43704 6.49500 6.58006 6.62968 6.67409 6.80544 6.92262 7.31668 7.41301 7.52487 7.63686 7.76678 8.05808 8.14667 8.45159 9.19856 9.81392 10.38622 11.26848 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011329 B = 0.003843 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.851697 B = 7283.529237 C = 8999.976349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.511 3.489 3 O -0.546 6.546 4 N -0.713 5.713 5 C 0.128 3.872 6 H 0.110 0.890 7 C -0.168 4.168 8 C 0.531 3.469 9 O -0.548 6.548 10 N -0.602 5.602 11 C 0.092 3.908 12 C -0.054 4.054 13 C -0.122 4.122 14 C 0.138 3.862 15 H 0.074 0.926 16 C -0.160 4.160 17 C -0.118 4.118 18 C 0.143 3.857 19 N -0.590 5.590 20 C -0.254 4.254 21 H 0.063 0.937 22 C 0.006 3.994 23 N -0.904 5.904 24 Si 0.903 3.097 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.283 1.283 28 C 0.171 3.829 29 C -0.128 4.128 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.409 0.591 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.053 0.947 45 H 0.064 0.936 46 H 0.054 0.946 47 H 0.018 0.982 48 H 0.254 0.746 49 H 0.089 0.911 50 H 0.019 0.981 51 H 0.059 0.941 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.746 -5.601 11.435 16.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.299 3.701 3 O -0.423 6.423 4 N -0.368 5.368 5 C 0.020 3.980 6 H 0.128 0.872 7 C -0.226 4.226 8 C 0.318 3.682 9 O -0.426 6.426 10 N -0.335 5.335 11 C -0.030 4.030 12 C -0.055 4.055 13 C -0.160 4.160 14 C 0.035 3.965 15 H 0.092 0.908 16 C -0.218 4.218 17 C -0.158 4.158 18 C 0.017 3.983 19 N -0.313 5.313 20 C -0.384 4.384 21 H 0.081 0.919 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.733 3.267 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.209 1.209 28 C 0.045 3.955 29 C -0.167 4.167 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.246 0.754 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.036 0.964 48 H 0.065 0.935 49 H 0.107 0.893 50 H 0.037 0.963 51 H 0.078 0.922 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.869 -5.270 11.390 16.602 hybrid contribution 0.508 -0.370 -0.663 0.913 sum -10.361 -5.640 10.728 15.945 Atomic orbital electron populations 1.21856 0.91397 1.04936 1.04758 1.20825 0.90674 0.83243 0.75407 1.90747 1.70706 1.31314 1.49524 1.45894 1.05899 1.09635 1.75371 1.20723 0.81735 0.96495 0.99081 0.87225 1.22343 1.03300 1.03720 0.93265 1.20171 0.81109 0.88842 0.78043 1.90636 1.54609 1.44515 1.52886 1.48581 1.05394 1.15736 1.63805 1.22820 0.86765 0.91207 1.02171 1.20975 0.93923 0.94229 0.96336 1.22824 0.93397 0.99692 1.00128 1.21635 0.92574 0.87083 0.95209 0.90770 1.22132 1.02547 1.01355 0.95809 1.21872 0.96497 0.98809 0.98588 1.20962 0.98968 0.92596 0.85820 1.43980 1.25345 1.54771 1.07174 1.19122 0.88568 1.42752 0.87951 0.91914 1.25125 0.95994 1.00070 0.98096 1.69950 1.16989 1.53712 1.14136 0.86367 0.81742 0.78107 0.80480 1.21054 1.21633 1.20879 1.20877 0.89517 0.88080 0.96978 1.22061 1.00275 1.00450 0.93949 0.88868 0.88778 0.90097 0.75412 0.91782 0.90601 0.89220 0.91463 0.88432 0.90114 0.90733 0.92691 0.91376 0.91881 0.92863 0.91717 0.92704 0.96394 0.93542 0.89264 0.96319 0.92229 0.93331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 10.30 36.01 0.37 -0.93 16 2 C 0.51 6.36 7.90 -10.99 -0.09 6.28 16 3 O -0.55 -9.15 16.76 5.56 0.09 -9.06 16 4 N -0.71 -8.65 4.98 -54.93 -0.27 -8.92 16 5 C 0.13 1.77 2.37 -69.08 -0.16 1.60 16 6 H 0.11 1.60 7.53 -51.93 -0.39 1.21 16 7 C -0.17 -2.44 9.25 37.16 0.34 -2.09 16 8 C 0.53 7.71 7.03 -10.99 -0.08 7.64 16 9 O -0.55 -8.78 14.77 5.55 0.08 -8.70 16 10 N -0.60 -8.33 3.06 -163.04 -0.50 -8.83 16 11 C 0.09 1.31 4.45 -2.86 -0.01 1.30 16 12 C -0.05 -0.78 0.54 -154.10 -0.08 -0.87 16 13 C -0.12 -1.47 5.42 -25.25 -0.14 -1.61 16 14 C 0.14 1.75 3.12 -66.70 -0.21 1.54 16 15 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 16 C -0.16 -1.84 9.10 37.16 0.34 -1.50 16 17 C -0.12 -1.80 4.83 -27.01 -0.13 -1.93 16 18 C 0.14 2.74 6.24 -3.63 -0.02 2.71 16 19 N -0.59 -13.72 2.97 -172.12 -0.51 -14.23 16 20 C -0.25 -6.66 9.57 -15.06 -0.14 -6.80 16 21 H 0.06 1.62 7.86 -52.49 -0.41 1.21 16 22 C 0.01 0.16 5.03 -17.43 -0.09 0.07 16 23 N -0.90 -25.21 11.07 55.49 0.61 -24.59 16 24 Si 0.90 21.17 29.57 -169.99 -5.03 16.14 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 C 0.17 3.74 4.97 -3.63 -0.02 3.72 16 29 C -0.13 -2.22 4.83 -27.00 -0.13 -2.35 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.41 4.37 7.74 -40.82 -0.32 4.06 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.09 1.42 3.80 -51.93 -0.20 1.22 16 37 H 0.07 0.90 7.97 -51.93 -0.41 0.48 16 38 H 0.10 1.56 3.37 -51.93 -0.18 1.38 16 39 H 0.08 0.92 8.01 -51.93 -0.42 0.51 16 40 H 0.07 0.81 7.70 -51.93 -0.40 0.41 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.89 6.81 -51.93 -0.35 0.54 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.69 8.09 -51.93 -0.42 0.27 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.05 1.05 7.93 -51.92 -0.41 0.64 16 47 H 0.02 0.35 7.64 -51.93 -0.40 -0.05 16 48 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.09 2.27 6.06 -51.93 -0.31 1.95 16 50 H 0.02 0.43 5.31 -51.93 -0.28 0.15 16 51 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 52 H 0.05 0.81 7.84 -51.93 -0.41 0.40 16 LS Contribution 392.88 15.07 5.92 5.92 Total: -1.00 -30.98 392.88 -8.51 -39.50 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -8.66 Total: 6.00 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -0.25 Total: 6.78 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -0.67 Total: -56.58 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: 0.18 Total: -17.76 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.98 -8.51 -39.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691957749.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.746 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds