Wall clock time and date at job start Tue Mar 31 2020 20:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21282 * 119.99567 * 2 1 4 4 N 1.34776 * 120.00251 * 180.02562 * 2 1 3 5 5 C 1.46499 * 119.99836 * 179.97438 * 4 2 1 6 6 H 1.08995 * 109.47643 * 34.99550 * 5 4 2 7 7 C 1.52998 * 109.47042 * 274.99302 * 5 4 2 8 8 C 1.50703 * 109.47069 * 154.99815 * 5 4 2 9 9 O 1.21288 * 119.99780 * 5.71833 * 8 5 4 10 10 N 1.34774 * 120.00152 * 185.72130 * 8 5 4 11 11 C 1.47574 * 125.63104 * 3.61411 * 10 8 5 12 12 C 1.54135 * 104.87700 * 203.35072 * 11 10 8 13 13 C 1.54365 * 102.48205 * 323.85828 * 12 11 10 14 14 C 1.47355 * 125.77824 * 183.61115 * 10 8 5 15 15 H 1.08998 * 109.84713 * 59.55455 * 14 10 8 16 16 C 1.52998 * 109.99315 * 298.50235 * 14 10 8 17 17 C 1.52110 * 110.64690 * 205.95818 * 12 11 10 18 18 C 1.53341 * 109.44332 * 295.63049 * 17 12 11 19 19 N 1.46926 * 108.69034 * 306.70164 * 18 17 12 20 20 C 1.36936 * 120.54990 * 234.36905 * 19 18 17 21 21 H 1.07999 * 120.00261 * 31.08395 * 20 19 18 22 22 C 1.38818 * 119.99848 * 211.08613 * 20 19 18 23 23 N 1.31623 * 119.99953 * 11.60286 * 22 20 19 24 24 Si 1.86796 * 120.00293 * 191.60670 * 22 20 19 25 25 H 1.48508 * 109.47200 * 59.99734 * 24 22 20 26 26 H 1.48493 * 109.47419 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47041 * 300.00104 * 24 22 20 28 28 C 1.46934 * 118.89599 * 54.34680 * 19 18 17 29 29 C 1.52114 * 110.65136 * 81.74023 * 12 11 10 30 30 H 1.08997 * 109.46879 * 269.99269 * 1 2 3 31 31 H 1.08999 * 109.47646 * 29.99731 * 1 2 3 32 32 H 1.09003 * 109.47014 * 149.99960 * 1 2 3 33 33 H 0.97001 * 120.00188 * 359.97438 * 4 2 1 34 34 H 1.09000 * 109.47362 * 307.90181 * 7 5 4 35 35 H 1.09002 * 109.47246 * 67.90470 * 7 5 4 36 36 H 1.09001 * 109.47343 * 187.90465 * 7 5 4 37 37 H 1.08993 * 110.37684 * 84.46380 * 11 10 8 38 38 H 1.09004 * 110.37149 * 322.23014 * 11 10 8 39 39 H 1.08994 * 110.73341 * 152.98997 * 13 12 11 40 40 H 1.08993 * 110.73492 * 276.30314 * 13 12 11 41 41 H 1.09000 * 109.47209 * 302.04687 * 16 14 10 42 42 H 1.08999 * 109.47480 * 62.04683 * 16 14 10 43 43 H 1.09005 * 109.46973 * 182.05012 * 16 14 10 44 44 H 1.08997 * 109.47065 * 55.62632 * 17 12 11 45 45 H 1.09004 * 109.47329 * 175.63933 * 17 12 11 46 46 H 1.09008 * 109.59382 * 186.94272 * 18 17 12 47 47 H 1.08999 * 109.73062 * 66.54831 * 18 17 12 48 48 H 0.96996 * 119.99834 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.60178 * 185.89061 * 28 19 18 50 50 H 1.08999 * 109.60320 * 65.40843 * 28 19 18 51 51 H 1.08994 * 109.47977 * 184.35505 * 29 12 11 52 52 H 1.08999 * 109.47143 * 304.36792 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 1 4.0095 -0.3254 0.5883 7 6 4.1553 -1.0412 -1.4383 8 6 4.1486 -2.4549 0.5989 9 8 3.3655 -3.3331 0.8931 10 7 5.4682 -2.6306 0.8088 11 6 6.5187 -1.6222 0.5691 12 6 7.8121 -2.4371 0.3725 13 6 7.6261 -3.6032 1.3668 14 6 6.1038 -3.8598 1.3152 15 1 5.8906 -4.6908 0.6428 16 6 5.5822 -4.1788 2.7177 17 6 9.0310 -1.6067 0.7447 18 6 9.1512 -0.4176 -0.2159 19 7 9.1335 -0.9230 -1.5954 20 6 10.1396 -0.6022 -2.4672 21 1 11.1410 -0.4360 -2.0986 22 6 9.8722 -0.4905 -3.8248 23 7 8.6270 -0.4651 -4.2504 24 14 11.2797 -0.3764 -5.0477 25 1 12.1229 -1.5947 -4.9471 26 1 10.7322 -0.2661 -6.4236 27 1 12.1030 0.8218 -4.7444 28 6 8.0186 -1.7789 -2.0238 29 6 7.9051 -2.9603 -1.0528 30 1 -0.3633 -0.0001 1.0276 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5139 33 1 1.6960 -2.0073 -0.0005 34 1 3.6811 -1.8007 -2.0598 35 1 3.9118 -0.0515 -1.8247 36 1 5.2361 -1.1816 -1.4543 37 1 6.6137 -0.9611 1.4305 38 1 6.2934 -1.0454 -0.3280 39 1 8.1773 -4.4836 1.0364 40 1 7.9339 -3.3079 2.3698 41 1 5.7828 -3.3367 3.3802 42 1 4.5081 -4.3586 2.6738 43 1 6.0843 -5.0682 3.0985 44 1 8.9229 -1.2400 1.7654 45 1 9.9267 -2.2238 0.6731 46 1 10.0879 0.1084 -0.0312 47 1 8.3136 0.2634 -0.0652 48 1 8.4402 -0.3867 -5.1990 49 1 8.2086 -2.1502 -3.0308 50 1 7.0918 -1.2053 -2.0118 51 1 8.7849 -3.5964 -1.1498 52 1 7.0111 -3.5385 -1.2867 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691957749.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:56 Heat of formation + Delta-G solvation = -72.079678 kcal Electronic energy + Delta-G solvation = -31853.502460 eV Core-core repulsion = 27852.444732 eV Total energy + Delta-G solvation = -4001.057727 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -42.05054 -40.79880 -39.66155 -37.57256 -36.15318 -34.81161 -33.59407 -32.50463 -31.84175 -31.58617 -29.71428 -28.72126 -27.13737 -26.11258 -25.41629 -23.92765 -23.04766 -22.24137 -21.47268 -20.40709 -19.70039 -18.55073 -18.48295 -17.64561 -17.31129 -16.90398 -16.80291 -16.37394 -15.82446 -15.65260 -15.53582 -15.30977 -14.94374 -14.93582 -14.71986 -14.49571 -14.14972 -14.07998 -13.82779 -13.51067 -13.40841 -13.28552 -13.16281 -13.06574 -12.91674 -12.87791 -12.81407 -12.69175 -12.55300 -12.30597 -12.23321 -11.99599 -11.84792 -11.78171 -11.43350 -11.09275 -11.05322 -10.92530 -10.85920 -10.47878 -10.30501 -9.71537 -8.54834 -7.82390 -5.31571 1.37377 1.48344 1.49281 1.54342 1.55793 1.67736 2.31731 2.53306 3.19402 3.31667 3.51057 3.68977 3.77462 3.84035 3.85391 3.96348 4.00559 4.13834 4.23976 4.31484 4.34213 4.47444 4.49802 4.58386 4.62012 4.65632 4.66175 4.70713 4.73715 4.77711 4.85460 4.94847 4.98432 5.04610 5.07366 5.11877 5.14234 5.22379 5.28904 5.31389 5.34250 5.40533 5.42536 5.48797 5.59480 5.69644 5.85811 6.37442 6.46023 6.46723 6.92253 7.16559 7.21574 7.92988 8.43610 9.22118 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011329 B = 0.003843 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.851697 B = 7283.529237 C = 8999.976349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.506 3.494 3 O -0.596 6.596 4 N -0.707 5.707 5 C 0.133 3.867 6 H 0.100 0.900 7 C -0.158 4.158 8 C 0.531 3.469 9 O -0.562 6.562 10 N -0.601 5.601 11 C 0.095 3.905 12 C -0.053 4.053 13 C -0.108 4.108 14 C 0.133 3.867 15 H 0.067 0.933 16 C -0.151 4.151 17 C -0.105 4.105 18 C 0.138 3.862 19 N -0.608 5.608 20 C -0.260 4.260 21 H 0.064 0.936 22 C -0.047 4.047 23 N -0.933 5.933 24 Si 0.962 3.038 25 H -0.278 1.278 26 H -0.297 1.297 27 H -0.277 1.277 28 C 0.180 3.820 29 C -0.112 4.112 30 H 0.113 0.887 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.418 0.582 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.059 0.941 42 H 0.048 0.952 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.064 0.936 46 H 0.051 0.949 47 H 0.016 0.984 48 H 0.247 0.753 49 H 0.047 0.953 50 H 0.004 0.996 51 H 0.055 0.945 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.842 -6.879 13.737 18.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.296 3.704 3 O -0.476 6.476 4 N -0.362 5.362 5 C 0.024 3.976 6 H 0.118 0.882 7 C -0.216 4.216 8 C 0.319 3.681 9 O -0.442 6.442 10 N -0.333 5.333 11 C -0.027 4.027 12 C -0.053 4.053 13 C -0.145 4.145 14 C 0.030 3.970 15 H 0.085 0.915 16 C -0.209 4.209 17 C -0.144 4.144 18 C 0.012 3.988 19 N -0.331 5.331 20 C -0.391 4.391 21 H 0.082 0.918 22 C -0.242 4.242 23 N -0.579 5.579 24 Si 0.791 3.209 25 H -0.204 1.204 26 H -0.223 1.223 27 H -0.203 1.203 28 C 0.054 3.946 29 C -0.151 4.151 30 H 0.131 0.869 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.256 0.744 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.117 0.883 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.083 0.917 46 H 0.070 0.930 47 H 0.034 0.966 48 H 0.057 0.943 49 H 0.066 0.934 50 H 0.022 0.978 51 H 0.073 0.927 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.962 -6.581 13.730 18.761 hybrid contribution 0.532 0.053 -1.372 1.472 sum -10.430 -6.528 12.358 17.439 Atomic orbital electron populations 1.21895 0.87242 1.06400 1.06455 1.21757 0.92587 0.82272 0.73831 1.90725 1.72092 1.32951 1.51856 1.45907 1.05139 1.10243 1.74883 1.20551 0.82972 0.96022 0.98076 0.88222 1.22204 1.02383 1.02938 0.94114 1.20169 0.81324 0.88658 0.77906 1.90627 1.54974 1.44935 1.53619 1.48615 1.05095 1.16174 1.63412 1.22740 0.86707 0.91293 1.01911 1.20882 0.93836 0.95491 0.95132 1.22771 0.92770 0.98661 1.00325 1.21795 0.93086 0.86183 0.95900 0.91494 1.22053 1.01443 1.02578 0.94866 1.21731 0.96633 0.96962 0.99080 1.21131 0.98686 0.94401 0.84549 1.44227 1.24935 1.55513 1.08471 1.19450 0.89445 1.41478 0.88705 0.91837 1.25804 0.97897 1.00775 0.99747 1.70121 1.18670 1.55410 1.13710 0.85430 0.79256 0.78232 0.78026 1.20447 1.22345 1.20312 1.20628 0.88476 0.89280 0.96188 1.21804 1.00199 0.98238 0.94841 0.86872 0.88421 0.87516 0.74351 0.91315 0.92016 0.90680 0.89849 0.90624 0.88950 0.88290 0.92190 0.93274 0.89586 0.89352 0.91690 0.93011 0.96642 0.94337 0.93438 0.97834 0.92663 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 10.30 71.24 0.73 -1.40 16 2 C 0.51 12.36 7.90 87.66 0.69 13.06 16 3 O -0.60 -20.40 16.76 -3.04 -0.05 -20.45 16 4 N -0.71 -16.81 4.98 -446.10 -2.22 -19.03 16 5 C 0.13 3.70 2.37 44.25 0.10 3.80 16 6 H 0.10 2.99 7.53 -2.39 -0.02 2.98 16 7 C -0.16 -4.79 9.25 71.98 0.67 -4.13 16 8 C 0.53 15.07 7.03 87.66 0.62 15.68 16 9 O -0.56 -17.38 14.77 -3.05 -0.05 -17.43 16 10 N -0.60 -15.78 3.06 -788.14 -2.41 -18.20 16 11 C 0.10 2.60 4.45 86.56 0.39 2.99 16 12 C -0.05 -1.42 0.54 -51.92 -0.03 -1.45 16 13 C -0.11 -2.17 5.42 31.56 0.17 -2.00 16 14 C 0.13 3.01 3.12 45.33 0.14 3.15 16 15 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 16 C -0.15 -2.99 9.10 71.98 0.66 -2.33 16 17 C -0.10 -2.91 4.83 30.41 0.15 -2.76 16 18 C 0.14 5.17 6.24 86.41 0.54 5.71 16 19 N -0.61 -28.72 2.97 -698.47 -2.08 -30.79 16 20 C -0.26 -13.86 9.57 84.04 0.80 -13.05 16 21 H 0.06 3.30 7.86 -2.91 -0.02 3.28 16 22 C -0.05 -2.56 5.03 84.86 0.43 -2.13 16 23 N -0.93 -54.19 11.07 21.65 0.24 -53.95 16 24 Si 0.96 44.36 29.57 68.60 2.03 46.39 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 26 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 27 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 28 C 0.18 8.13 4.97 86.41 0.43 8.55 16 29 C -0.11 -3.82 4.83 30.42 0.15 -3.67 16 30 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.42 8.45 7.74 -92.71 -0.72 7.74 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.07 2.52 3.80 -2.39 -0.01 2.51 16 37 H 0.08 2.03 7.97 -2.39 -0.02 2.01 16 38 H 0.08 2.46 3.37 -2.38 -0.01 2.45 16 39 H 0.09 1.73 8.01 -2.39 -0.02 1.71 16 40 H 0.10 1.61 7.70 -2.39 -0.02 1.59 16 41 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.05 1.18 6.81 -2.39 -0.02 1.16 16 43 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 44 H 0.09 1.90 8.09 -2.39 -0.02 1.88 16 45 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.05 1.94 7.93 -2.38 -0.02 1.92 16 47 H 0.02 0.59 7.64 -2.39 -0.02 0.58 16 48 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 49 H 0.05 2.53 6.06 -2.39 -0.01 2.52 16 50 H 0.00 0.18 5.31 -2.39 -0.01 0.17 16 51 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 52 H 0.05 1.75 7.84 -2.39 -0.02 1.73 16 Total: -1.00 -69.94 392.88 2.30 -67.64 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.21 Total: 25.81 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: 6.63 Total: 20.01 kcal Atomic # 7 Polarization: -115.50 SS G_CDS: -6.47 Total: -121.98 kcal Atomic # 8 Polarization: -37.79 SS G_CDS: -0.10 Total: -37.88 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -69.94 2.30 -67.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691957749.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.441 kcal (2) G-P(sol) polarization free energy of solvation -69.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds