Wall clock time and date at job start Tue Mar 31 2020 20:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21280 * 120.00152 * 2 1 4 4 N 1.34785 * 119.99872 * 179.97438 * 2 1 3 5 5 C 1.46499 * 119.99541 * 180.02562 * 4 2 1 6 6 H 1.09000 * 109.47069 * 324.99719 * 5 4 2 7 7 C 1.52994 * 109.47353 * 84.99932 * 5 4 2 8 8 C 1.50704 * 109.46901 * 205.00331 * 5 4 2 9 9 O 1.21286 * 119.99919 * 359.97438 * 8 5 4 10 10 N 1.34771 * 119.99925 * 180.02562 * 8 5 4 11 11 C 1.47562 * 125.63277 * 0.02562 * 10 8 5 12 12 C 1.54140 * 104.78153 * 203.33216 * 11 10 8 13 13 C 1.54366 * 102.47779 * 323.91141 * 12 11 10 14 14 C 1.47091 * 125.62940 * 179.71602 * 10 8 5 15 15 H 1.09002 * 109.87708 * 59.56965 * 14 10 8 16 16 C 1.53002 * 109.87461 * 298.42531 * 14 10 8 17 17 C 1.52103 * 110.65204 * 206.01596 * 12 11 10 18 18 C 1.53350 * 109.44153 * 295.62571 * 17 12 11 19 19 N 1.46922 * 108.68800 * 306.70387 * 18 17 12 20 20 C 1.36939 * 120.55111 * 234.36225 * 19 18 17 21 21 H 1.08001 * 120.00021 * 152.40197 * 20 19 18 22 22 C 1.38811 * 120.00177 * 332.40794 * 20 19 18 23 23 N 1.31620 * 120.00598 * 159.34818 * 22 20 19 24 24 Si 1.86805 * 119.99919 * 339.34380 * 22 20 19 25 25 H 1.48500 * 109.47025 * 93.23784 * 24 22 20 26 26 H 1.48493 * 109.47334 * 213.23771 * 24 22 20 27 27 H 1.48498 * 109.47158 * 333.24242 * 24 22 20 28 28 C 1.46935 * 118.89646 * 54.34423 * 19 18 17 29 29 C 1.52108 * 110.65043 * 81.79013 * 12 11 10 30 30 H 1.08999 * 109.47366 * 239.99820 * 1 2 3 31 31 H 1.08999 * 109.47430 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.46996 * 120.00048 * 1 2 3 33 33 H 0.96994 * 119.99761 * 0.02562 * 4 2 1 34 34 H 1.09003 * 109.46932 * 60.00316 * 7 5 4 35 35 H 1.08996 * 109.47100 * 179.97438 * 7 5 4 36 36 H 1.08994 * 109.47554 * 300.00028 * 7 5 4 37 37 H 1.09001 * 110.37637 * 322.15760 * 11 10 8 38 38 H 1.09009 * 110.37743 * 84.50531 * 11 10 8 39 39 H 1.08996 * 110.73459 * 152.98879 * 13 12 11 40 40 H 1.09000 * 110.73535 * 276.30260 * 13 12 11 41 41 H 1.08996 * 109.47761 * 61.45348 * 16 14 10 42 42 H 1.09003 * 109.46929 * 181.45231 * 16 14 10 43 43 H 1.09001 * 109.47238 * 301.44600 * 16 14 10 44 44 H 1.08999 * 109.47667 * 55.61734 * 17 12 11 45 45 H 1.08998 * 109.48116 * 175.63599 * 17 12 11 46 46 H 1.08998 * 109.59987 * 186.93903 * 18 17 12 47 47 H 1.09008 * 109.73035 * 66.54518 * 18 17 12 48 48 H 0.96992 * 120.00705 * 179.97438 * 23 22 20 49 49 H 1.09004 * 109.59778 * 185.89224 * 28 19 18 50 50 H 1.08998 * 109.60023 * 65.41439 * 28 19 18 51 51 H 1.08999 * 109.47582 * 184.35779 * 29 12 11 52 52 H 1.08999 * 109.47745 * 304.37305 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0094 -0.3255 -0.5884 7 6 4.1553 -1.0411 1.4382 8 6 4.1485 -2.4550 -0.5990 9 8 3.3605 -3.2908 -0.9883 10 7 5.4735 -2.6784 -0.7021 11 6 6.5377 -1.7525 -0.2688 12 6 7.7698 -2.1506 -1.1050 13 6 7.6279 -3.6849 -1.1985 14 6 6.0978 -3.8882 -1.2591 15 1 5.7848 -4.0236 -2.2944 16 6 5.6985 -5.1093 -0.4281 17 6 9.0537 -1.7761 -0.3804 18 6 9.1345 -0.2511 -0.2405 19 7 8.9642 0.3532 -1.5688 20 6 9.8963 1.2277 -2.0604 21 1 10.0355 1.3255 -3.1269 22 6 10.6624 1.9885 -1.1879 23 7 11.8017 2.5077 -1.5938 24 14 10.0762 2.2756 0.5624 25 1 10.6586 1.2418 1.4553 26 1 10.5098 3.6217 1.0151 27 1 8.5943 2.1914 0.6083 28 6 7.7773 0.0033 -2.3612 29 6 7.7045 -1.5230 -2.4890 30 1 -0.3634 -0.5138 0.8899 31 1 -0.3634 1.0276 -0.0005 32 1 -0.3633 -0.5138 -0.8900 33 1 1.6959 -2.0073 0.0005 34 1 3.7919 -1.8829 2.0277 35 1 5.2453 -1.0415 1.4386 36 1 3.7919 -0.1097 1.8722 37 1 6.2529 -0.7217 -0.4797 38 1 6.7428 -1.8806 0.7941 39 1 8.1061 -4.0623 -2.1023 40 1 8.0417 -4.1655 -0.3120 41 1 4.6169 -5.2379 -0.4676 42 1 6.1850 -5.9977 -0.8309 43 1 6.0094 -4.9623 0.6062 44 1 9.0589 -2.2326 0.6093 45 1 9.9107 -2.1346 -0.9506 46 1 10.1066 0.0277 0.1662 47 1 8.3455 0.0997 0.4248 48 1 12.3368 3.0396 -0.9843 49 1 7.8548 0.4500 -3.3525 50 1 6.8819 0.3716 -1.8605 51 1 8.5425 -1.8779 -3.0889 52 1 6.7679 -1.8031 -2.9712 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691957750.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:08 Heat of formation + Delta-G solvation = -71.188039 kcal Electronic energy + Delta-G solvation = -31837.883520 eV Core-core repulsion = 27836.864457 eV Total energy + Delta-G solvation = -4001.019063 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.09352 -40.85085 -39.75056 -37.77285 -36.15756 -34.83808 -33.63594 -32.93820 -32.01551 -31.81221 -29.69658 -28.93224 -27.19040 -25.93866 -25.37818 -24.48224 -23.03995 -22.43198 -21.51503 -20.33705 -19.88251 -18.62445 -18.58186 -17.69726 -17.32868 -17.14655 -16.78179 -16.40891 -16.04258 -15.89769 -15.41247 -15.30911 -15.18901 -15.09668 -14.75181 -14.37904 -14.27378 -14.20241 -13.91198 -13.80585 -13.52091 -13.43359 -13.28904 -13.19837 -13.16650 -12.96459 -12.83962 -12.70292 -12.53319 -12.29957 -12.19900 -12.08733 -11.95651 -11.59993 -11.54794 -11.14887 -11.11825 -11.08041 -10.88792 -10.60854 -10.30207 -9.73386 -8.88536 -8.14847 -5.46043 1.29797 1.38753 1.44190 1.51887 1.52941 1.68469 2.30519 2.42969 3.08700 3.17430 3.35504 3.42902 3.67018 3.77077 3.84182 3.96396 4.01995 4.09711 4.12306 4.26458 4.36334 4.42679 4.44021 4.47652 4.53345 4.56115 4.62739 4.64674 4.68525 4.70940 4.76947 4.79700 4.86032 4.92805 5.02703 5.05307 5.05969 5.09747 5.18175 5.22150 5.23398 5.27490 5.30335 5.37516 5.41912 5.52918 5.89453 6.14471 6.36074 6.46129 6.92743 6.95166 7.16951 7.65487 8.04613 9.05417 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011278 B = 0.004080 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.127963 B = 6861.614295 C = 8469.434868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.506 3.494 3 O -0.596 6.596 4 N -0.707 5.707 5 C 0.125 3.875 6 H 0.093 0.907 7 C -0.158 4.158 8 C 0.532 3.468 9 O -0.562 6.562 10 N -0.599 5.599 11 C 0.101 3.899 12 C -0.056 4.056 13 C -0.107 4.107 14 C 0.134 3.866 15 H 0.068 0.932 16 C -0.152 4.152 17 C -0.108 4.108 18 C 0.117 3.883 19 N -0.617 5.617 20 C -0.247 4.247 21 H 0.048 0.952 22 C -0.034 4.034 23 N -0.959 5.959 24 Si 0.944 3.056 25 H -0.267 1.267 26 H -0.316 1.316 27 H -0.261 1.261 28 C 0.143 3.857 29 C -0.107 4.107 30 H 0.115 0.885 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.418 0.582 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.049 0.951 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.092 0.908 45 H 0.063 0.937 46 H 0.048 0.952 47 H 0.035 0.965 48 H 0.261 0.739 49 H 0.047 0.953 50 H 0.028 0.972 51 H 0.061 0.939 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.474 -17.231 7.076 26.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.295 3.705 3 O -0.476 6.476 4 N -0.362 5.362 5 C 0.016 3.984 6 H 0.110 0.890 7 C -0.216 4.216 8 C 0.320 3.680 9 O -0.442 6.442 10 N -0.332 5.332 11 C -0.021 4.021 12 C -0.057 4.057 13 C -0.145 4.145 14 C 0.032 3.968 15 H 0.086 0.914 16 C -0.210 4.210 17 C -0.147 4.147 18 C -0.008 4.008 19 N -0.341 5.341 20 C -0.377 4.377 21 H 0.065 0.935 22 C -0.229 4.229 23 N -0.606 5.606 24 Si 0.773 3.227 25 H -0.193 1.193 26 H -0.246 1.246 27 H -0.186 1.186 28 C 0.019 3.981 29 C -0.146 4.146 30 H 0.134 0.866 31 H 0.110 0.890 32 H 0.127 0.873 33 H 0.256 0.744 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.117 0.883 41 H 0.068 0.932 42 H 0.101 0.899 43 H 0.081 0.919 44 H 0.110 0.890 45 H 0.082 0.918 46 H 0.067 0.933 47 H 0.053 0.947 48 H 0.070 0.930 49 H 0.065 0.935 50 H 0.046 0.954 51 H 0.080 0.920 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.448 -16.850 6.889 26.639 hybrid contribution 0.216 0.730 0.297 0.817 sum -19.233 -16.120 7.186 26.103 Atomic orbital electron populations 1.21923 0.87442 1.06271 1.06581 1.21718 0.92531 0.82341 0.73896 1.90743 1.72119 1.33051 1.51716 1.45828 1.05250 1.10098 1.75009 1.20641 0.82884 0.95725 0.99116 0.88951 1.22188 1.02861 1.03328 0.93245 1.20192 0.81266 0.88075 0.78456 1.90650 1.54942 1.47589 1.50989 1.48536 1.04318 1.19790 1.60518 1.22674 0.86470 0.93469 0.99477 1.20905 0.93861 0.95898 0.95045 1.22762 0.93031 0.93908 1.04800 1.21726 0.93071 0.84584 0.97452 0.91401 1.22050 1.01751 0.97061 1.00142 1.21748 0.96644 0.95253 1.01039 1.21483 0.98888 0.93848 0.86553 1.44431 1.22604 1.49989 1.17117 1.18855 1.11580 1.15104 0.92169 0.93465 1.25893 0.96761 0.98187 1.02062 1.69966 1.13203 1.39412 1.38004 0.85944 0.79388 0.75781 0.81547 1.19293 1.24582 1.18570 1.21102 0.87808 0.94463 0.94761 1.21671 1.01386 0.95424 0.96071 0.86644 0.88982 0.87283 0.74353 0.90489 0.89845 0.91789 0.91102 0.88870 0.88887 0.88343 0.93202 0.89885 0.91866 0.88970 0.91805 0.93349 0.94699 0.93033 0.93457 0.95403 0.92023 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 10.32 71.24 0.74 -1.11 16 2 C 0.51 11.04 7.90 87.66 0.69 11.74 16 3 O -0.60 -19.19 16.75 -3.03 -0.05 -19.24 16 4 N -0.71 -14.14 4.95 -446.09 -2.21 -16.35 16 5 C 0.13 2.87 2.34 44.24 0.10 2.98 16 6 H 0.09 2.56 7.29 -2.39 -0.02 2.55 16 7 C -0.16 -3.11 9.30 71.98 0.67 -2.44 16 8 C 0.53 12.64 7.07 87.66 0.62 13.26 16 9 O -0.56 -15.33 14.88 -3.05 -0.05 -15.37 16 10 N -0.60 -12.88 3.05 -788.75 -2.41 -15.29 16 11 C 0.10 2.25 3.11 86.56 0.27 2.52 16 12 C -0.06 -1.33 0.54 -51.92 -0.03 -1.36 16 13 C -0.11 -1.85 5.43 31.56 0.17 -1.68 16 14 C 0.13 2.53 3.11 45.38 0.14 2.67 16 15 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 16 C -0.15 -2.48 9.10 71.98 0.66 -1.83 16 17 C -0.11 -2.96 4.83 30.42 0.15 -2.82 16 18 C 0.12 4.47 3.94 86.42 0.34 4.81 16 19 N -0.62 -27.70 2.75 -698.48 -1.92 -29.62 16 20 C -0.25 -13.89 10.02 84.03 0.84 -13.04 16 21 H 0.05 2.94 8.06 -2.91 -0.02 2.91 16 22 C -0.03 -2.00 5.23 84.86 0.44 -1.56 16 23 N -0.96 -60.31 13.97 21.65 0.30 -60.01 16 24 Si 0.94 45.84 24.36 68.60 1.67 47.51 16 25 H -0.27 -11.87 6.63 99.48 0.66 -11.21 16 26 H -0.32 -15.93 7.11 99.48 0.71 -15.22 16 27 H -0.26 -12.14 6.64 99.48 0.66 -11.48 16 28 C 0.14 5.35 6.20 86.41 0.54 5.89 16 29 C -0.11 -3.04 4.83 30.41 0.15 -2.89 16 30 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.09 1.12 8.12 -2.39 -0.02 1.10 16 32 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.42 6.82 7.79 -92.71 -0.72 6.10 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.08 1.56 4.98 -2.39 -0.01 1.55 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.85 5.47 -2.39 -0.01 1.84 16 38 H 0.09 1.76 6.85 -2.38 -0.02 1.74 16 39 H 0.09 1.50 8.01 -2.39 -0.02 1.48 16 40 H 0.10 1.37 7.69 -2.39 -0.02 1.36 16 41 H 0.05 1.01 6.89 -2.39 -0.02 1.00 16 42 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 44 H 0.09 1.95 8.09 -2.39 -0.02 1.93 16 45 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.05 2.10 4.46 -2.39 -0.01 2.09 16 47 H 0.04 1.27 6.61 -2.38 -0.02 1.26 16 48 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 49 H 0.05 1.88 7.93 -2.39 -0.02 1.86 16 50 H 0.03 1.02 6.57 -2.39 -0.02 1.00 16 51 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 52 H 0.07 1.78 7.85 -2.39 -0.02 1.76 16 Total: -1.00 -75.50 388.63 1.93 -73.57 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.10 Total: 19.67 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: 6.49 Total: 15.13 kcal Atomic # 7 Polarization: -115.04 SS G_CDS: -6.24 Total: -121.27 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -0.10 Total: -34.61 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.67 Total: 47.51 kcal Total: -75.50 1.93 -73.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691957750.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.387 kcal (2) G-P(sol) polarization free energy of solvation -75.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds