Wall clock time and date at job start Tue Mar 31 2020 20:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47042 * 2 1 4 4 C 1.52998 * 109.46882 * 120.00066 * 2 1 3 5 5 C 1.53012 * 109.46827 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.46603 * 299.99628 * 5 4 2 7 7 C 1.52998 * 109.47225 * 60.00616 * 6 5 4 8 8 C 1.52996 * 109.47004 * 239.99567 * 2 1 3 9 9 C 1.53009 * 109.47102 * 60.00255 * 8 2 1 10 10 N 1.46498 * 109.46865 * 64.28847 * 9 8 2 11 11 C 1.36937 * 119.99533 * 174.91725 * 10 9 8 12 12 H 1.07992 * 120.00334 * 0.02562 * 11 10 9 13 13 C 1.38817 * 119.99835 * 180.02562 * 11 10 9 14 14 N 1.31621 * 119.99844 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00063 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47084 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.47153 * 119.99959 * 15 13 11 18 18 H 1.48496 * 109.47267 * 240.00219 * 15 13 11 19 19 N 1.46491 * 109.47581 * 300.00331 * 8 2 1 20 20 C 1.34775 * 120.00290 * 184.16006 * 19 8 2 21 21 O 1.21280 * 120.00172 * 354.50773 * 20 19 8 22 22 C 1.50702 * 120.00420 * 174.51076 * 20 19 8 23 23 N 1.46493 * 109.47320 * 179.97438 * 22 20 19 24 24 C 1.34780 * 119.99761 * 180.02562 * 23 22 20 25 25 O 1.21277 * 120.00441 * 0.02562 * 24 23 22 26 26 C 1.50702 * 119.99805 * 180.02562 * 24 23 22 27 27 C 1.53001 * 117.50002 * 248.62469 * 26 24 23 28 28 C 1.52999 * 59.99995 * 252.50942 * 27 26 24 29 29 H 1.09002 * 109.47182 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47303 * 299.99821 * 1 2 3 31 31 H 1.09001 * 109.47423 * 59.99979 * 1 2 3 32 32 H 1.08994 * 109.47773 * 60.00421 * 4 2 1 33 33 H 1.08999 * 109.46999 * 299.99664 * 4 2 1 34 34 H 1.09001 * 109.46503 * 179.97438 * 5 4 2 35 35 H 1.08994 * 109.46714 * 59.99634 * 5 4 2 36 36 H 1.08993 * 109.47558 * 300.00024 * 6 5 4 37 37 H 1.09005 * 109.46851 * 180.02562 * 6 5 4 38 38 H 1.08999 * 109.46999 * 179.97438 * 7 6 5 39 39 H 1.08993 * 109.47336 * 59.99272 * 7 6 5 40 40 H 1.09000 * 109.46490 * 304.29362 * 9 8 2 41 41 H 1.08992 * 109.47062 * 184.29042 * 9 8 2 42 42 H 0.96998 * 120.00668 * 354.91826 * 10 9 8 43 43 H 0.97005 * 119.99515 * 179.97438 * 14 13 11 44 44 H 0.97006 * 120.00269 * 4.15412 * 19 8 2 45 45 H 1.08999 * 109.47333 * 300.00181 * 22 20 19 46 46 H 1.09002 * 109.46863 * 59.99640 * 22 20 19 47 47 H 0.97000 * 120.00562 * 0.02562 * 23 22 20 48 48 H 1.08999 * 115.55104 * 34.32900 * 26 24 23 49 49 H 1.08999 * 117.49731 * 359.97438 * 27 26 24 50 50 H 1.08994 * 117.50093 * 145.02180 * 27 26 24 51 51 H 1.09000 * 117.50121 * 252.50862 * 28 27 26 52 52 H 1.08999 * 117.52184 * 107.47730 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2495 6 6 4.0804 -1.4416 0.0003 7 6 3.5705 -0.7204 -1.2489 8 6 2.0399 -0.7213 -1.2492 9 6 1.5299 -0.0001 -2.4985 10 7 2.1009 1.3480 -2.5513 11 6 1.8692 2.1475 -3.6386 12 1 1.2653 1.7845 -4.4570 13 6 2.4106 3.4248 -3.6889 14 7 3.1470 3.8671 -2.6918 15 14 2.0951 4.5152 -5.1725 16 1 1.2439 3.7887 -6.1487 17 1 1.4015 5.7542 -4.7376 18 1 3.3884 4.8697 -5.8102 19 7 1.5516 -2.1025 -1.2492 20 6 1.9449 -2.9563 -2.2150 21 8 2.6220 -2.5570 -3.1385 22 6 1.5432 -4.4072 -2.1474 23 7 2.0905 -5.1198 -3.3044 24 6 1.8576 -6.4388 -3.4554 25 8 1.1947 -7.0355 -2.6338 26 6 2.4211 -7.1720 -4.6454 27 6 1.4317 -7.6755 -5.6983 28 6 2.1215 -8.6680 -4.7602 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6767 -1.7489 1.2493 33 1 1.6766 -0.2074 2.1392 34 1 3.9333 -1.2342 2.1398 35 1 3.9329 0.3071 1.2497 36 1 3.7175 -2.4694 0.0001 37 1 5.1705 -1.4417 0.0007 38 1 3.9345 -1.2338 -2.1388 39 1 3.9334 0.3074 -1.2487 40 1 0.4427 0.0670 -2.4608 41 1 1.8291 -0.5564 -3.3867 42 1 2.6430 1.6744 -1.8161 43 1 3.5256 4.7595 -2.7271 44 1 0.9452 -2.4026 -0.5540 45 1 1.9324 -4.8497 -1.2304 46 1 0.4559 -4.4839 -2.1548 47 1 2.6204 -4.6426 -3.9619 48 1 3.3940 -6.8254 -4.9937 49 1 0.3733 -7.4768 -5.5301 50 1 1.7537 -7.6601 -6.7395 51 1 2.8973 -9.3055 -5.1842 52 1 1.5173 -9.1219 -3.9748 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698656888.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:10 Heat of formation + Delta-G solvation = -46.054807 kcal Electronic energy + Delta-G solvation = -30828.880251 eV Core-core repulsion = 26828.951046 eV Total energy + Delta-G solvation = -3999.929204 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.84801 -40.03852 -38.21647 -36.43154 -34.66191 -34.43735 -33.67187 -32.35453 -31.43252 -29.48899 -28.12445 -26.36883 -24.99601 -24.17972 -22.86481 -22.72246 -21.73053 -20.73644 -20.57917 -20.37124 -18.62932 -18.14193 -17.18439 -16.79727 -16.29763 -15.97175 -15.38610 -15.12215 -14.80927 -14.61217 -14.44073 -14.24519 -14.00039 -13.93055 -13.69040 -13.31753 -13.04408 -12.79335 -12.68478 -12.67287 -12.50321 -11.87418 -11.80290 -11.65894 -11.54841 -11.39580 -11.13591 -10.94747 -10.89248 -10.83853 -10.80421 -10.61686 -10.41805 -10.14407 -10.09767 -10.03246 -9.94197 -9.65584 -9.36538 -9.29499 -8.79271 -8.70603 -6.84462 -5.73152 -2.99959 2.25231 2.63039 2.67497 3.37712 3.45666 3.51971 3.53764 3.56864 4.39569 4.48301 4.57093 4.58858 4.68256 4.84430 4.88285 4.91460 4.96002 5.13938 5.15555 5.28677 5.29184 5.37966 5.46133 5.58223 5.61345 5.62779 5.65143 5.72813 5.75165 5.80156 5.80268 5.98300 6.02092 6.07861 6.11718 6.16255 6.27791 6.32750 6.41881 6.43409 6.52803 6.55173 6.78505 6.85857 6.86463 7.08201 7.29786 7.61138 7.75711 7.99447 8.25949 8.46483 9.57558 10.14889 10.49798 11.50034 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010819 B = 0.003106 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.386167 B = 9011.478606 C =10730.056533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 H 0.096 0.904 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.114 4.114 7 C -0.126 4.126 8 C 0.182 3.818 9 C 0.143 3.857 10 N -0.725 5.725 11 C -0.230 4.230 12 H 0.069 0.931 13 C -0.015 4.015 14 N -0.935 5.935 15 Si 0.905 3.095 16 H -0.281 1.281 17 H -0.293 1.293 18 H -0.292 1.292 19 N -0.709 5.709 20 C 0.506 3.494 21 O -0.521 6.521 22 C 0.099 3.901 23 N -0.711 5.711 24 C 0.545 3.455 25 O -0.546 6.546 26 C -0.194 4.194 27 C -0.152 4.152 28 C -0.148 4.148 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.017 0.983 41 H 0.045 0.955 42 H 0.383 0.617 43 H 0.253 0.747 44 H 0.397 0.603 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.415 0.585 48 H 0.126 0.874 49 H 0.100 0.900 50 H 0.105 0.895 51 H 0.103 0.897 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.155 -20.666 4.593 21.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 H 0.114 0.886 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.152 4.152 7 C -0.165 4.165 8 C 0.097 3.903 9 C 0.015 3.985 10 N -0.370 5.370 11 C -0.362 4.362 12 H 0.087 0.913 13 C -0.211 4.211 14 N -0.584 5.584 15 Si 0.737 3.263 16 H -0.206 1.206 17 H -0.220 1.220 18 H -0.220 1.220 19 N -0.362 5.362 20 C 0.290 3.710 21 O -0.397 6.397 22 C -0.029 4.029 23 N -0.366 5.366 24 C 0.332 3.668 25 O -0.424 6.424 26 C -0.215 4.215 27 C -0.189 4.189 28 C -0.185 4.185 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.035 0.965 41 H 0.062 0.938 42 H 0.218 0.782 43 H 0.063 0.937 44 H 0.232 0.768 45 H 0.114 0.886 46 H 0.113 0.887 47 H 0.253 0.747 48 H 0.144 0.856 49 H 0.118 0.882 50 H 0.124 0.876 51 H 0.121 0.879 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.186 -20.714 4.374 21.283 hybrid contribution 0.038 1.027 -0.467 1.129 sum -2.148 -19.687 3.907 20.185 Atomic orbital electron populations 1.21873 0.95092 1.00804 1.02709 1.21374 0.95872 1.00985 0.92801 0.88573 1.21602 0.95777 0.99922 0.97674 1.21551 0.95542 1.01209 0.97477 1.21490 0.99807 0.98875 0.94988 1.21903 0.93798 1.02589 0.98173 1.20561 0.94153 0.79263 0.96297 1.21077 0.95443 0.87284 0.94690 1.42294 1.61626 1.10641 1.22471 1.19247 1.25544 0.94559 0.96809 0.91332 1.24688 1.00654 0.97649 0.98084 1.69659 1.38863 1.18283 1.31614 0.86137 0.77283 0.80630 0.82293 1.20647 1.22010 1.21953 1.46017 1.49334 1.11864 1.28955 1.20341 0.80603 0.87408 0.82628 1.90721 1.38327 1.77776 1.32891 1.21089 1.00699 0.90190 0.90919 1.45632 1.55296 1.08975 1.26654 1.19648 0.79614 0.81385 0.86138 1.90690 1.40064 1.67393 1.44254 1.22161 1.02154 0.98682 0.98535 1.22952 0.98021 1.02379 0.95569 1.22958 1.03246 0.89974 1.02345 0.93663 0.92822 0.91097 0.92628 0.92011 0.92653 0.91568 0.92942 0.92521 0.89909 0.89854 0.96545 0.93751 0.78221 0.93684 0.76762 0.88607 0.88676 0.74687 0.85597 0.88195 0.87634 0.87882 0.87413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.67 37.16 0.32 -1.59 16 2 C -0.09 -1.29 1.87 -90.62 -0.17 -1.46 16 3 H 0.10 1.66 7.03 -51.93 -0.37 1.30 16 4 C -0.11 -1.28 5.03 -26.73 -0.13 -1.41 16 5 C -0.12 -1.45 5.92 -26.73 -0.16 -1.61 16 6 C -0.11 -1.51 5.76 -26.73 -0.15 -1.67 16 7 C -0.13 -2.10 4.24 -26.70 -0.11 -2.22 16 8 C 0.18 2.83 0.11 -131.79 -0.01 2.81 16 9 C 0.14 2.92 4.96 -4.04 -0.02 2.90 16 10 N -0.72 -17.97 4.99 -59.91 -0.30 -18.27 16 11 C -0.23 -6.46 9.99 -15.06 -0.15 -6.61 16 12 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 13 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 14 N -0.93 -28.00 13.06 55.49 0.72 -27.27 16 15 Si 0.90 22.66 29.55 -169.99 -5.02 17.63 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 17 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 18 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 19 N -0.71 -8.66 3.74 -47.58 -0.18 -8.84 16 20 C 0.51 6.58 7.24 -10.99 -0.08 6.50 16 21 O -0.52 -8.71 11.88 5.56 0.07 -8.65 16 22 C 0.10 1.04 6.16 -5.20 -0.03 1.00 16 23 N -0.71 -7.77 5.53 -61.47 -0.34 -8.11 16 24 C 0.55 6.24 7.61 -10.98 -0.08 6.15 16 25 O -0.55 -7.85 16.26 5.56 0.09 -7.76 16 26 C -0.19 -1.66 6.19 -91.77 -0.57 -2.23 16 27 C -0.15 -1.11 10.23 -26.73 -0.27 -1.38 16 28 C -0.15 -1.12 10.04 -26.73 -0.27 -1.39 16 29 H 0.04 0.48 6.78 -51.93 -0.35 0.12 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.11 6.34 -51.93 -0.33 0.78 16 32 H 0.06 0.54 6.95 -51.93 -0.36 0.18 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.65 7.55 -51.93 -0.39 0.26 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 1.56 6.07 -51.93 -0.32 1.24 16 39 H 0.08 1.62 6.71 -51.93 -0.35 1.27 16 40 H 0.02 0.35 6.21 -51.93 -0.32 0.02 16 41 H 0.04 1.01 6.20 -51.93 -0.32 0.69 16 42 H 0.38 9.82 5.38 -40.82 -0.22 9.60 16 43 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.40 3.77 6.18 -40.82 -0.25 3.52 16 45 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.41 4.51 7.44 -40.82 -0.30 4.20 16 48 H 0.13 0.87 8.14 -51.93 -0.42 0.44 16 49 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 50 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 52 H 0.11 0.95 7.67 -51.93 -0.40 0.56 16 LS Contribution 398.06 15.07 6.00 6.00 Total: -1.00 -33.17 398.06 -9.43 -42.60 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: -8.48 Total: 15.40 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -1.99 Total: -2.73 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: -0.09 Total: -62.49 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: 0.16 Total: -16.41 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.17 -9.43 -42.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698656888.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.453 kcal (2) G-P(sol) polarization free energy of solvation -33.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds