Wall clock time and date at job start Tue Mar 31 2020 20:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47042 * 2 1 4 4 C 1.52998 * 109.46882 * 120.00066 * 2 1 3 5 5 C 1.53012 * 109.46827 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.46603 * 299.99628 * 5 4 2 7 7 C 1.52998 * 109.47225 * 60.00616 * 6 5 4 8 8 C 1.52996 * 109.47004 * 239.99567 * 2 1 3 9 9 C 1.53009 * 109.47102 * 60.00255 * 8 2 1 10 10 N 1.46498 * 109.46865 * 64.28847 * 9 8 2 11 11 C 1.36937 * 119.99533 * 174.91725 * 10 9 8 12 12 H 1.07992 * 120.00334 * 0.02562 * 11 10 9 13 13 C 1.38817 * 119.99835 * 180.02562 * 11 10 9 14 14 N 1.31621 * 119.99844 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00063 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47084 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.47153 * 119.99959 * 15 13 11 18 18 H 1.48496 * 109.47267 * 240.00219 * 15 13 11 19 19 N 1.46491 * 109.47581 * 300.00331 * 8 2 1 20 20 C 1.34775 * 120.00290 * 184.16006 * 19 8 2 21 21 O 1.21280 * 120.00172 * 354.50773 * 20 19 8 22 22 C 1.50702 * 120.00420 * 174.51076 * 20 19 8 23 23 N 1.46493 * 109.47320 * 179.97438 * 22 20 19 24 24 C 1.34780 * 119.99761 * 180.02562 * 23 22 20 25 25 O 1.21277 * 120.00441 * 0.02562 * 24 23 22 26 26 C 1.50702 * 119.99805 * 180.02562 * 24 23 22 27 27 C 1.53001 * 117.50002 * 248.62469 * 26 24 23 28 28 C 1.52999 * 59.99995 * 252.50942 * 27 26 24 29 29 H 1.09002 * 109.47182 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47303 * 299.99821 * 1 2 3 31 31 H 1.09001 * 109.47423 * 59.99979 * 1 2 3 32 32 H 1.08994 * 109.47773 * 60.00421 * 4 2 1 33 33 H 1.08999 * 109.46999 * 299.99664 * 4 2 1 34 34 H 1.09001 * 109.46503 * 179.97438 * 5 4 2 35 35 H 1.08994 * 109.46714 * 59.99634 * 5 4 2 36 36 H 1.08993 * 109.47558 * 300.00024 * 6 5 4 37 37 H 1.09005 * 109.46851 * 180.02562 * 6 5 4 38 38 H 1.08999 * 109.46999 * 179.97438 * 7 6 5 39 39 H 1.08993 * 109.47336 * 59.99272 * 7 6 5 40 40 H 1.09000 * 109.46490 * 304.29362 * 9 8 2 41 41 H 1.08992 * 109.47062 * 184.29042 * 9 8 2 42 42 H 0.96998 * 120.00668 * 354.91826 * 10 9 8 43 43 H 0.97005 * 119.99515 * 179.97438 * 14 13 11 44 44 H 0.97006 * 120.00269 * 4.15412 * 19 8 2 45 45 H 1.08999 * 109.47333 * 300.00181 * 22 20 19 46 46 H 1.09002 * 109.46863 * 59.99640 * 22 20 19 47 47 H 0.97000 * 120.00562 * 0.02562 * 23 22 20 48 48 H 1.08999 * 115.55104 * 34.32900 * 26 24 23 49 49 H 1.08999 * 117.49731 * 359.97438 * 27 26 24 50 50 H 1.08994 * 117.50093 * 145.02180 * 27 26 24 51 51 H 1.09000 * 117.50121 * 252.50862 * 28 27 26 52 52 H 1.08999 * 117.52184 * 107.47730 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2495 6 6 4.0804 -1.4416 0.0003 7 6 3.5705 -0.7204 -1.2489 8 6 2.0399 -0.7213 -1.2492 9 6 1.5299 -0.0001 -2.4985 10 7 2.1009 1.3480 -2.5513 11 6 1.8692 2.1475 -3.6386 12 1 1.2653 1.7845 -4.4570 13 6 2.4106 3.4248 -3.6889 14 7 3.1470 3.8671 -2.6918 15 14 2.0951 4.5152 -5.1725 16 1 1.2439 3.7887 -6.1487 17 1 1.4015 5.7542 -4.7376 18 1 3.3884 4.8697 -5.8102 19 7 1.5516 -2.1025 -1.2492 20 6 1.9449 -2.9563 -2.2150 21 8 2.6220 -2.5570 -3.1385 22 6 1.5432 -4.4072 -2.1474 23 7 2.0905 -5.1198 -3.3044 24 6 1.8576 -6.4388 -3.4554 25 8 1.1947 -7.0355 -2.6338 26 6 2.4211 -7.1720 -4.6454 27 6 1.4317 -7.6755 -5.6983 28 6 2.1215 -8.6680 -4.7602 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6767 -1.7489 1.2493 33 1 1.6766 -0.2074 2.1392 34 1 3.9333 -1.2342 2.1398 35 1 3.9329 0.3071 1.2497 36 1 3.7175 -2.4694 0.0001 37 1 5.1705 -1.4417 0.0007 38 1 3.9345 -1.2338 -2.1388 39 1 3.9334 0.3074 -1.2487 40 1 0.4427 0.0670 -2.4608 41 1 1.8291 -0.5564 -3.3867 42 1 2.6430 1.6744 -1.8161 43 1 3.5256 4.7595 -2.7271 44 1 0.9452 -2.4026 -0.5540 45 1 1.9324 -4.8497 -1.2304 46 1 0.4559 -4.4839 -2.1548 47 1 2.6204 -4.6426 -3.9619 48 1 3.3940 -6.8254 -4.9937 49 1 0.3733 -7.4768 -5.5301 50 1 1.7537 -7.6601 -6.7395 51 1 2.8973 -9.3055 -5.1842 52 1 1.5173 -9.1219 -3.9748 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698656888.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:06 Heat of formation + Delta-G solvation = -68.719522 kcal Electronic energy + Delta-G solvation = -30829.863066 eV Core-core repulsion = 26828.951046 eV Total energy + Delta-G solvation = -4000.912020 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.01427 -40.95046 -39.34705 -37.12868 -36.34966 -35.49540 -34.92696 -33.57774 -33.20259 -30.98005 -29.11825 -27.74878 -26.49488 -25.13299 -24.55721 -23.29843 -22.97806 -21.81546 -21.74951 -21.22465 -19.89288 -19.23137 -18.99401 -17.75077 -17.27104 -17.02331 -16.65018 -16.21547 -16.15038 -15.92631 -15.64619 -15.35741 -15.21360 -15.16636 -14.95846 -14.69635 -14.47208 -14.15891 -13.78116 -13.60162 -13.51403 -13.22884 -13.02870 -12.93227 -12.79012 -12.75184 -12.53002 -12.42825 -12.30917 -12.09569 -11.87220 -11.80412 -11.54881 -11.46799 -11.43311 -11.17350 -11.16345 -11.02194 -10.88240 -10.48184 -10.26276 -9.95811 -8.94926 -7.95475 -5.22316 1.41653 1.44394 1.45433 1.55151 1.56228 1.74509 2.39116 2.56674 2.93107 3.37391 3.50370 3.68847 3.77810 3.79674 3.81375 3.87882 3.99964 4.11710 4.17284 4.21325 4.28923 4.31819 4.36283 4.46181 4.50717 4.55946 4.63184 4.73547 4.75265 4.89899 4.92151 4.94837 4.99457 5.03024 5.09018 5.13458 5.18318 5.21367 5.24884 5.28049 5.31414 5.37578 5.42469 5.45871 5.52506 5.54716 5.70833 6.27182 6.42248 6.55894 7.11935 7.22600 7.33954 8.09316 8.34626 9.28030 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010819 B = 0.003106 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.386167 B = 9011.478606 C =10730.056533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.057 0.943 4 C -0.105 4.105 5 C -0.119 4.119 6 C -0.106 4.106 7 C -0.120 4.120 8 C 0.197 3.803 9 C 0.146 3.854 10 N -0.731 5.731 11 C -0.240 4.240 12 H 0.065 0.935 13 C -0.072 4.072 14 N -0.966 5.966 15 Si 0.970 3.030 16 H -0.271 1.271 17 H -0.290 1.290 18 H -0.293 1.293 19 N -0.695 5.695 20 C 0.508 3.492 21 O -0.560 6.560 22 C 0.106 3.894 23 N -0.711 5.711 24 C 0.543 3.457 25 O -0.579 6.579 26 C -0.206 4.206 27 C -0.145 4.145 28 C -0.145 4.145 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.037 0.963 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.018 0.982 41 H 0.019 0.981 42 H 0.376 0.624 43 H 0.251 0.749 44 H 0.416 0.584 45 H 0.115 0.885 46 H 0.109 0.891 47 H 0.415 0.585 48 H 0.144 0.856 49 H 0.090 0.910 50 H 0.127 0.873 51 H 0.126 0.874 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.929 -22.759 5.428 23.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 H 0.075 0.925 4 C -0.142 4.142 5 C -0.156 4.156 6 C -0.143 4.143 7 C -0.159 4.159 8 C 0.111 3.889 9 C 0.018 3.982 10 N -0.375 5.375 11 C -0.372 4.372 12 H 0.083 0.917 13 C -0.264 4.264 14 N -0.617 5.617 15 Si 0.799 3.201 16 H -0.195 1.195 17 H -0.217 1.217 18 H -0.221 1.221 19 N -0.349 5.349 20 C 0.294 3.706 21 O -0.438 6.438 22 C -0.021 4.021 23 N -0.365 5.365 24 C 0.331 3.669 25 O -0.460 6.460 26 C -0.227 4.227 27 C -0.183 4.183 28 C -0.182 4.182 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.035 0.965 41 H 0.037 0.963 42 H 0.210 0.790 43 H 0.060 0.940 44 H 0.255 0.745 45 H 0.133 0.867 46 H 0.127 0.873 47 H 0.253 0.747 48 H 0.162 0.838 49 H 0.108 0.892 50 H 0.145 0.855 51 H 0.144 0.856 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.994 -22.842 5.224 23.622 hybrid contribution 0.270 1.654 -0.774 1.846 sum -2.724 -21.188 4.450 21.821 Atomic orbital electron populations 1.21835 0.93864 1.02559 1.01818 1.21282 0.96827 0.99056 0.93519 0.92472 1.21586 0.95075 1.01229 0.96304 1.21553 0.96171 1.00220 0.97698 1.21436 0.99874 0.99339 0.93690 1.21753 0.94666 1.00328 0.99158 1.20129 0.93352 0.80683 0.94752 1.21126 0.95173 0.85468 0.96412 1.42399 1.61581 1.12075 1.21475 1.19560 1.24966 0.95202 0.97457 0.91656 1.25468 1.01015 0.99045 1.00906 1.69808 1.40021 1.18460 1.33401 0.85123 0.77013 0.78710 0.79231 1.19548 1.21696 1.22057 1.45757 1.49430 1.10194 1.29495 1.20804 0.79590 0.88422 0.81788 1.90724 1.40035 1.78627 1.34455 1.21111 1.01508 0.87886 0.91634 1.45708 1.55067 1.09025 1.26714 1.20120 0.78996 0.81270 0.86504 1.90669 1.41693 1.67967 1.45630 1.22258 1.03199 0.99181 0.98038 1.23046 0.97284 1.01530 0.96418 1.23023 1.03590 0.89632 1.01962 0.90530 0.91332 0.94387 0.89748 0.90360 0.89836 0.93560 0.91124 0.92517 0.92529 0.93738 0.96455 0.96271 0.78984 0.94005 0.74523 0.86735 0.87303 0.74670 0.83842 0.89192 0.85481 0.85584 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 8.67 71.98 0.62 -2.87 16 2 C -0.09 -2.43 1.87 -10.80 -0.02 -2.45 16 3 H 0.06 2.06 7.03 -2.39 -0.02 2.04 16 4 C -0.10 -2.07 5.03 30.60 0.15 -1.92 16 5 C -0.12 -2.63 5.92 30.60 0.18 -2.45 16 6 C -0.11 -2.69 5.76 30.59 0.18 -2.52 16 7 C -0.12 -4.16 4.24 30.61 0.13 -4.03 16 8 C 0.20 6.17 0.11 3.63 0.00 6.17 16 9 C 0.15 6.18 4.96 86.38 0.43 6.61 16 10 N -0.73 -38.14 4.99 -343.45 -1.72 -39.85 16 11 C -0.24 -13.93 9.99 84.03 0.84 -13.09 16 12 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 13 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 14 N -0.97 -59.74 13.06 21.65 0.28 -59.46 16 15 Si 0.97 47.51 29.55 68.60 2.03 49.53 16 16 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 17 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 18 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 19 N -0.69 -15.86 3.74 -422.85 -1.58 -17.44 16 20 C 0.51 12.69 7.24 87.66 0.63 13.32 16 21 O -0.56 -19.02 11.88 -3.03 -0.04 -19.06 16 22 C 0.11 2.01 6.16 85.64 0.53 2.54 16 23 N -0.71 -14.72 5.53 -466.79 -2.58 -17.30 16 24 C 0.54 11.80 7.61 87.66 0.67 12.47 16 25 O -0.58 -16.07 16.26 -3.02 -0.05 -16.12 16 26 C -0.21 -3.21 6.19 -11.54 -0.07 -3.28 16 27 C -0.15 -1.88 10.23 30.59 0.31 -1.57 16 28 C -0.14 -1.95 10.04 30.59 0.31 -1.64 16 29 H 0.08 1.36 6.78 -2.39 -0.02 1.34 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.04 1.17 6.34 -2.39 -0.02 1.16 16 32 H 0.08 1.23 6.95 -2.39 -0.02 1.21 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.36 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 1.56 7.55 -2.39 -0.02 1.54 16 37 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.06 2.24 6.07 -2.39 -0.01 2.22 16 39 H 0.04 1.86 6.71 -2.39 -0.02 1.85 16 40 H 0.02 0.75 6.21 -2.39 -0.01 0.73 16 41 H 0.02 0.92 6.20 -2.39 -0.01 0.91 16 42 H 0.38 20.53 5.38 -92.71 -0.50 20.03 16 43 H 0.25 15.00 8.31 -92.70 -0.77 14.23 16 44 H 0.42 6.44 6.18 -92.70 -0.57 5.87 16 45 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.42 8.78 7.44 -92.71 -0.69 8.09 16 48 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 51 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 52 H 0.09 1.56 7.67 -2.39 -0.02 1.54 16 Total: -1.00 -75.86 398.06 0.90 -74.96 By element: Atomic # 1 Polarization: 44.03 SS G_CDS: -0.81 Total: 43.22 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: 5.36 Total: 1.52 kcal Atomic # 7 Polarization: -128.45 SS G_CDS: -5.59 Total: -134.05 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -0.09 Total: -35.18 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.53 kcal Total: -75.86 0.90 -74.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698656888.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.238 kcal (2) G-P(sol) polarization free energy of solvation -75.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds