Wall clock time and date at job start Tue Mar 31 2020 21:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.46862 * 2 1 4 4 C 1.53006 * 109.47223 * 119.99147 * 2 1 3 5 5 C 1.52997 * 109.47164 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46978 * 299.99874 * 5 4 2 7 7 H 1.08992 * 109.47056 * 300.00064 * 6 5 4 8 8 C 1.50701 * 109.46958 * 180.02562 * 6 5 4 9 9 O 1.21277 * 120.00058 * 240.00386 * 8 6 5 10 10 N 1.34776 * 119.99804 * 60.00369 * 8 6 5 11 11 C 1.46505 * 119.99811 * 179.97438 * 10 8 6 12 12 C 1.52996 * 109.46998 * 180.02562 * 11 10 8 13 13 H 1.08996 * 112.96461 * 72.85342 * 12 11 10 14 14 C 1.53943 * 113.76055 * 204.50624 * 12 11 10 15 15 C 1.53931 * 86.34301 * 138.03315 * 14 12 11 16 16 N 1.47960 * 86.18245 * 336.28086 * 15 14 12 17 17 C 1.46899 * 111.00223 * 137.58145 * 16 15 14 18 18 C 1.50708 * 109.47176 * 70.63676 * 17 16 15 19 19 O 1.21287 * 119.99772 * 0.02562 * 18 17 16 20 20 N 1.34770 * 120.00043 * 180.02562 * 18 17 16 21 21 C 1.37098 * 120.00304 * 180.02562 * 20 18 17 22 22 H 1.08005 * 119.99365 * 359.97438 * 21 20 18 23 23 C 1.38940 * 120.00501 * 180.02562 * 21 20 18 24 24 N 1.31416 * 120.00345 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00370 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46978 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47124 * 119.99641 * 25 23 21 28 28 H 1.48494 * 109.47469 * 239.99841 * 25 23 21 29 29 C 1.52996 * 109.46891 * 60.00410 * 6 5 4 30 30 C 1.52997 * 109.47482 * 239.99435 * 2 1 3 31 31 H 1.09001 * 109.47066 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47747 * 300.00400 * 1 2 3 33 33 H 1.09002 * 109.47103 * 60.00812 * 1 2 3 34 34 H 1.09001 * 109.47002 * 60.00080 * 4 2 1 35 35 H 1.09000 * 109.47050 * 300.00346 * 4 2 1 36 36 H 1.09002 * 109.47045 * 180.02562 * 5 4 2 37 37 H 1.09001 * 109.47375 * 59.99966 * 5 4 2 38 38 H 0.96999 * 120.00497 * 359.97438 * 10 8 6 39 39 H 1.09000 * 109.47120 * 299.99711 * 11 10 8 40 40 H 1.09001 * 109.46919 * 59.99997 * 11 10 8 41 41 H 1.08997 * 113.73069 * 252.39686 * 14 12 11 42 42 H 1.09004 * 113.73068 * 23.56758 * 14 12 11 43 43 H 1.08999 * 113.75833 * 90.59709 * 15 14 12 44 44 H 1.08999 * 113.76319 * 221.84852 * 15 14 12 45 45 H 1.08994 * 109.47389 * 190.63858 * 17 16 15 46 46 H 1.09003 * 109.47212 * 310.64418 * 17 16 15 47 47 H 0.97006 * 120.00000 * 359.97438 * 20 18 17 48 48 H 0.96991 * 120.01031 * 180.02562 * 24 23 21 49 49 H 1.09004 * 109.47368 * 179.97438 * 29 6 5 50 50 H 1.09001 * 109.47372 * 59.99964 * 29 6 5 51 51 H 1.09002 * 109.47153 * 59.99783 * 30 2 1 52 52 H 1.09001 * 109.46832 * 299.99974 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5699 -0.7205 1.2497 6 6 4.0804 -1.4416 0.0006 7 1 3.7175 -2.4693 0.0005 8 6 5.5874 -1.4416 0.0012 9 8 6.1942 -0.9163 -0.9080 10 7 6.2609 -2.0254 1.0122 11 6 7.7259 -2.0259 1.0125 12 6 8.2354 -2.7478 2.2615 13 1 8.0978 -3.8280 2.2142 14 6 9.6508 -2.3211 2.6906 15 6 9.1122 -2.3382 4.1325 16 7 7.7752 -2.1410 3.5302 17 6 6.7717 -2.9899 4.1862 18 6 6.5087 -2.4733 5.5773 19 8 7.0987 -1.4940 5.9821 20 7 5.6179 -3.0994 6.3715 21 6 5.3782 -2.6292 7.6368 22 1 5.9036 -1.7571 7.9972 23 6 4.4602 -3.2750 8.4557 24 7 3.8212 -4.3364 8.0174 25 14 4.1341 -2.6346 10.1799 26 1 4.9743 -1.4360 10.4299 27 1 2.7006 -2.2694 10.3095 28 1 4.4677 -3.6890 11.1709 29 6 3.5705 -0.7205 -1.2487 30 6 2.0400 -0.7213 -1.2491 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5137 -0.8901 34 1 1.6766 -1.7488 1.2495 35 1 1.6766 -0.2072 2.1393 36 1 3.9333 -1.2346 2.1395 37 1 3.9329 0.3073 1.2498 38 1 5.7756 -2.4453 1.7396 39 1 8.0893 -2.5399 0.1227 40 1 8.0896 -0.9983 1.0126 41 1 10.4137 -3.0755 2.4982 42 1 9.9357 -1.3295 2.3387 43 1 9.2305 -3.2986 4.6341 44 1 9.4513 -1.4977 4.7381 45 1 5.8466 -2.9702 3.6103 46 1 7.1427 -4.0133 4.2429 47 1 5.1457 -3.8825 6.0475 48 1 3.1801 -4.7871 8.5888 49 1 3.9345 -1.2339 -2.1387 50 1 3.9335 0.3073 -1.2487 51 1 1.6767 -0.2076 -2.1392 52 1 1.6767 -1.7490 -1.2490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699636925.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:25 Heat of formation + Delta-G solvation = -92.022159 kcal Electronic energy + Delta-G solvation = -30124.320505 eV Core-core repulsion = 26122.398006 eV Total energy + Delta-G solvation = -4001.922498 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -41.59568 -40.92177 -39.53903 -38.84894 -35.97516 -35.56866 -33.72990 -33.32127 -31.99318 -31.65771 -29.62966 -27.54436 -27.48560 -25.30000 -24.41794 -23.57263 -22.91413 -21.28315 -21.07533 -20.72909 -20.39643 -19.90419 -18.29704 -17.79520 -17.24595 -17.00877 -16.53584 -16.39511 -16.31115 -15.72734 -15.60315 -15.38550 -15.18327 -15.10969 -14.88002 -14.81786 -14.25774 -14.05196 -13.77376 -13.53716 -13.46931 -13.18763 -13.09977 -13.03435 -12.91225 -12.77208 -12.43196 -12.40250 -12.29907 -12.13478 -12.02960 -11.92074 -11.85640 -11.73524 -11.58009 -11.49612 -11.26353 -10.93055 -10.65765 -10.33122 -10.04730 -10.00556 -9.67291 -8.46909 -5.94960 1.35527 1.41625 1.54772 1.63592 2.04604 2.18000 2.28663 2.78727 3.19598 3.27003 3.58217 3.64064 3.69606 3.75027 3.76823 4.03551 4.13766 4.15737 4.19981 4.25114 4.28145 4.36549 4.42803 4.44031 4.49670 4.52643 4.56764 4.62143 4.67592 4.82900 4.85736 4.89476 4.92888 4.98755 5.00087 5.04350 5.13443 5.18411 5.22740 5.25933 5.32249 5.35895 5.41388 5.41713 5.45021 5.52321 5.60837 5.92227 6.09935 6.52423 6.60588 7.13618 7.23505 7.56487 8.12787 8.70466 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008090 B = 0.003398 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3460.249430 B = 8237.510350 C =11242.226753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.060 0.940 4 C -0.111 4.111 5 C -0.108 4.108 6 C -0.099 4.099 7 H 0.117 0.883 8 C 0.513 3.487 9 O -0.583 6.583 10 N -0.716 5.716 11 C 0.144 3.856 12 C 0.020 3.980 13 H 0.108 0.892 14 C -0.117 4.117 15 C 0.011 3.989 16 N -0.473 5.473 17 C 0.023 3.977 18 C 0.441 3.559 19 O -0.618 6.618 20 N -0.572 5.572 21 C -0.331 4.331 22 H 0.075 0.925 23 C -0.009 4.009 24 N -0.918 5.918 25 Si 0.987 3.013 26 H -0.276 1.276 27 H -0.271 1.271 28 H -0.271 1.271 29 C -0.094 4.094 30 C -0.107 4.107 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.405 0.595 39 H 0.083 0.917 40 H 0.055 0.945 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.105 0.895 46 H 0.080 0.920 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.064 0.936 50 H 0.050 0.950 51 H 0.073 0.927 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.568 -0.948 -18.186 18.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.079 0.921 4 C -0.148 4.148 5 C -0.146 4.146 6 C -0.120 4.120 7 H 0.135 0.865 8 C 0.301 3.699 9 O -0.464 6.464 10 N -0.368 5.368 11 C 0.020 3.980 12 C -0.090 4.090 13 H 0.126 0.874 14 C -0.155 4.155 15 C -0.118 4.118 16 N -0.196 5.196 17 C -0.109 4.109 18 C 0.229 3.771 19 O -0.504 6.504 20 N -0.210 5.210 21 C -0.461 4.461 22 H 0.093 0.907 23 C -0.209 4.209 24 N -0.559 5.559 25 Si 0.812 3.188 26 H -0.201 1.201 27 H -0.196 1.196 28 H -0.196 1.196 29 C -0.132 4.132 30 C -0.144 4.144 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.241 0.759 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.122 0.878 42 H 0.110 0.890 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.123 0.877 46 H 0.098 0.902 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.083 0.917 50 H 0.069 0.931 51 H 0.091 0.909 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.192 0.588 -18.447 18.495 hybrid contribution -0.310 -0.923 1.552 1.832 sum -1.502 -0.334 -16.895 16.965 Atomic orbital electron populations 1.21802 0.94300 1.02258 1.01861 1.21163 0.96160 0.99243 0.94719 0.92124 1.21581 0.93511 1.01709 0.98021 1.21479 0.97200 1.00111 0.95777 1.21374 0.89439 1.03229 0.97993 0.86525 1.21144 0.91109 0.76674 0.80979 1.90650 1.71387 1.46668 1.37680 1.45994 1.07661 1.58166 1.24933 1.21260 0.79570 1.00404 0.96751 1.23882 0.96012 0.99021 0.90035 0.87420 1.23295 0.95264 1.03590 0.93365 1.23661 0.89731 1.00983 0.97397 1.68443 1.04690 1.43416 1.03069 1.22398 0.99385 0.96559 0.92554 1.20708 0.82562 0.85600 0.88273 1.90509 1.53496 1.29763 1.76667 1.41915 1.37485 1.28312 1.13269 1.19633 1.22904 1.12566 0.90968 0.90669 1.25936 0.95634 0.95956 1.03357 1.69655 1.27314 1.19867 1.39033 0.84949 0.78233 0.78158 0.77495 1.20065 1.19609 1.19593 1.21295 0.96129 1.00009 0.95785 1.21589 0.93541 1.01518 0.97751 0.92107 0.92950 0.92056 0.90613 0.92045 0.91799 0.93020 0.75875 0.89889 0.92706 0.87796 0.88951 0.91314 0.91708 0.87748 0.90175 0.76972 0.91316 0.91699 0.93133 0.90867 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.19 71.98 0.66 -1.37 16 2 C -0.09 -1.55 2.72 -10.79 -0.03 -1.58 16 3 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 4 C -0.11 -2.03 5.20 30.60 0.16 -1.87 16 5 C -0.11 -2.29 5.10 30.59 0.16 -2.13 16 6 C -0.10 -1.99 2.53 -11.54 -0.03 -2.02 16 7 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 8 C 0.51 13.16 7.15 87.66 0.63 13.79 16 9 O -0.58 -19.06 15.98 -3.02 -0.05 -19.10 16 10 N -0.72 -16.44 5.39 -463.06 -2.50 -18.94 16 11 C 0.14 3.19 5.80 86.38 0.50 3.69 16 12 C 0.02 0.41 3.41 45.02 0.15 0.56 16 13 H 0.11 1.76 7.80 -2.39 -0.02 1.74 16 14 C -0.12 -2.29 7.84 31.24 0.25 -2.05 16 15 C 0.01 0.32 6.75 86.40 0.58 0.90 16 16 N -0.47 -14.04 5.63 -888.32 -5.00 -19.04 16 17 C 0.02 0.71 5.11 85.56 0.44 1.15 16 18 C 0.44 20.18 7.59 87.66 0.67 20.84 16 19 O -0.62 -33.66 15.13 -3.05 -0.05 -33.70 16 20 N -0.57 -28.26 5.29 -306.99 -1.62 -29.89 16 21 C -0.33 -18.42 9.68 84.04 0.81 -17.61 16 22 H 0.08 4.53 7.16 -2.91 -0.02 4.51 16 23 C -0.01 -0.46 5.50 84.92 0.47 0.01 16 24 N -0.92 -48.05 13.05 21.66 0.28 -47.77 16 25 Si 0.99 42.28 29.55 68.60 2.03 44.30 16 26 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 27 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 28 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 29 C -0.09 -1.85 4.50 30.61 0.14 -1.72 16 30 C -0.11 -1.62 5.21 30.61 0.16 -1.46 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 1.44 7.56 -2.39 -0.02 1.42 16 37 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.41 8.52 6.00 -92.71 -0.56 7.97 16 39 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.05 1.44 7.91 -2.39 -0.02 1.42 16 41 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.09 1.84 7.94 -2.38 -0.02 1.82 16 43 H 0.07 1.90 7.78 -2.39 -0.02 1.88 16 44 H 0.06 2.22 8.09 -2.39 -0.02 2.20 16 45 H 0.10 2.80 6.55 -2.39 -0.02 2.79 16 46 H 0.08 2.14 7.69 -2.39 -0.02 2.13 16 47 H 0.40 18.40 7.90 -92.70 -0.73 17.67 16 48 H 0.28 13.59 8.31 -92.71 -0.77 12.82 16 49 H 0.06 1.32 8.10 -2.39 -0.02 1.30 16 50 H 0.05 1.18 8.10 -2.39 -0.02 1.16 16 51 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 52 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -70.91 409.23 -1.57 -72.48 By element: Atomic # 1 Polarization: 42.90 SS G_CDS: -0.38 Total: 42.52 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 5.71 Total: 9.14 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -8.84 Total: -115.64 kcal Atomic # 8 Polarization: -52.71 SS G_CDS: -0.09 Total: -52.81 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -70.91 -1.57 -72.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699636925.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.539 kcal (2) G-P(sol) polarization free energy of solvation -70.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds