Wall clock time and date at job start Tue Mar 31 2020 21:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 110.43375 * 2 1 4 4 C 1.54272 * 110.48517 * 122.53845 * 2 1 3 5 5 C 1.53874 * 106.59833 * 142.42246 * 4 2 1 6 6 C 1.54266 * 106.59990 * 0.02562 * 5 4 2 7 7 H 1.08996 * 110.48634 * 95.19737 * 6 5 4 8 8 C 1.50696 * 110.48847 * 217.71587 * 6 5 4 9 9 O 1.21280 * 120.00406 * 116.75680 * 8 6 5 10 10 N 1.34781 * 119.99468 * 296.75556 * 8 6 5 11 11 C 1.46503 * 119.99592 * 180.02562 * 10 8 6 12 12 C 1.53001 * 109.46823 * 174.64153 * 11 10 8 13 13 N 1.46901 * 112.90490 * 309.35420 * 12 11 10 14 14 C 1.46893 * 111.00198 * 294.21889 * 13 12 11 15 15 C 1.50704 * 109.47251 * 182.60335 * 14 13 12 16 16 O 1.21298 * 119.99585 * 359.97438 * 15 14 13 17 17 N 1.34771 * 120.00118 * 180.02562 * 15 14 13 18 18 C 1.37105 * 119.99855 * 179.97438 * 17 15 14 19 19 H 1.07995 * 119.99806 * 0.02562 * 18 17 15 20 20 C 1.38954 * 120.00048 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99867 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00215 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46751 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47159 * 119.99660 * 22 20 18 25 25 H 1.48496 * 109.47245 * 240.00370 * 22 20 18 26 26 C 1.53780 * 113.61424 * 178.10691 * 12 11 10 27 27 C 1.53777 * 87.17655 * 220.05891 * 26 12 11 28 28 C 1.53785 * 87.07843 * 25.39000 * 27 26 12 29 29 C 1.54894 * 104.30993 * 336.45537 * 6 5 4 30 30 H 1.08997 * 109.46979 * 298.91478 * 1 2 3 31 31 H 1.08996 * 109.46879 * 58.91596 * 1 2 3 32 32 H 1.08994 * 109.46660 * 178.91277 * 1 2 3 33 33 H 1.09004 * 110.03066 * 23.13499 * 4 2 1 34 34 H 1.08999 * 110.07085 * 261.72915 * 4 2 1 35 35 H 1.09001 * 110.03167 * 240.71685 * 5 4 2 36 36 H 1.08998 * 110.07187 * 119.30993 * 5 4 2 37 37 H 0.96991 * 120.00464 * 359.97438 * 10 8 6 38 38 H 1.08999 * 109.47657 * 54.63872 * 11 10 8 39 39 H 1.08998 * 109.47213 * 294.63606 * 11 10 8 40 40 H 1.00902 * 111.00054 * 58.17734 * 13 12 11 41 41 H 1.09004 * 109.47226 * 302.59644 * 14 13 12 42 42 H 1.08999 * 109.47588 * 62.60482 * 14 13 12 43 43 H 0.96994 * 120.00313 * 359.97438 * 17 15 14 44 44 H 0.96999 * 120.00098 * 180.02562 * 21 20 18 45 45 H 1.09005 * 113.61752 * 105.46714 * 26 12 11 46 46 H 1.09002 * 113.61641 * 334.64988 * 26 12 11 47 47 H 1.08993 * 113.61917 * 139.93948 * 27 26 12 48 48 H 1.09003 * 113.61398 * 270.84762 * 27 26 12 49 49 H 1.08997 * 113.61285 * 89.11786 * 28 27 26 50 50 H 1.09003 * 113.61444 * 219.93952 * 28 27 26 51 51 H 1.09004 * 110.75326 * 156.19121 * 29 6 5 52 52 H 1.08996 * 110.76089 * 279.55928 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0700 -0.7773 1.2183 5 6 3.3186 -1.5369 0.7370 6 6 3.4943 -1.1942 -0.7569 7 1 4.1938 -0.3673 -0.8788 8 6 3.9686 -2.4022 -1.5229 9 8 3.2712 -2.8817 -2.3916 10 7 5.1679 -2.9496 -1.2426 11 6 5.6293 -4.1236 -1.9877 12 6 7.0625 -4.4608 -1.5715 13 7 7.9618 -3.3005 -1.6267 14 6 8.1380 -2.8363 -3.0091 15 6 9.1143 -1.6884 -3.0330 16 8 9.6137 -1.2955 -1.9998 17 7 9.4316 -1.0979 -4.2021 18 6 10.3194 -0.0533 -4.2237 19 1 10.7647 0.2960 -3.3039 20 6 10.6470 0.5553 -5.4292 21 7 10.1055 0.1299 -6.5484 22 14 11.8570 1.9780 -5.4588 23 1 12.3197 2.2630 -4.0767 24 1 13.0219 1.6195 -6.3072 25 1 11.1910 3.1828 -6.0155 26 6 7.6273 -5.7115 -2.2654 27 6 8.2666 -6.0784 -0.9157 28 6 7.1537 -5.2497 -0.2526 29 6 2.0770 -0.7786 -1.2236 30 1 -0.3633 0.4969 0.8995 31 1 -0.3633 0.5306 -0.8801 32 1 -0.3632 -1.0275 -0.0195 33 1 1.3184 -1.4819 1.5746 34 1 2.3388 -0.0839 2.0152 35 1 3.1730 -2.6102 0.8596 36 1 4.1939 -1.2124 1.2996 37 1 5.7258 -2.5659 -0.5482 38 1 5.6020 -3.9097 -3.0561 39 1 4.9790 -4.9708 -1.7700 40 1 7.6271 -2.5551 -1.0347 41 1 8.5224 -3.6528 -3.6204 42 1 7.1785 -2.5053 -3.4064 43 1 9.0320 -1.4118 -5.0283 44 1 10.3344 0.5545 -7.3900 45 1 8.3541 -5.4871 -3.0461 46 1 6.8603 -6.4144 -2.5906 47 1 8.2163 -7.1421 -0.6835 48 1 9.2637 -5.6605 -0.7770 49 1 6.2562 -5.8255 -0.0269 50 1 7.4978 -4.6535 0.5925 51 1 2.1328 -0.1341 -2.1010 52 1 1.4640 -1.6567 -1.4264 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700139821.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:04 Heat of formation + Delta-G solvation = -72.981464 kcal Electronic energy + Delta-G solvation = -30008.579558 eV Core-core repulsion = 26007.482726 eV Total energy + Delta-G solvation = -4001.096832 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.53898 -39.56354 -37.99621 -37.65612 -34.63087 -34.05771 -33.02993 -31.79175 -31.20863 -29.22697 -28.15303 -26.69785 -25.74875 -25.30036 -24.02760 -22.66365 -21.64445 -20.15153 -19.96921 -19.24954 -18.70947 -17.89991 -17.42533 -16.47098 -16.28361 -16.03924 -15.41017 -15.19564 -14.93986 -14.62745 -14.40312 -14.18805 -14.04425 -13.92534 -13.76318 -13.46436 -13.38250 -13.06315 -12.76714 -12.41403 -12.36083 -12.24658 -11.88285 -11.61123 -11.58792 -11.48327 -11.36300 -11.15012 -11.07833 -11.02305 -10.88401 -10.85523 -10.68419 -10.53748 -10.35579 -10.24804 -10.17350 -9.77254 -9.53203 -9.15389 -8.52398 -8.12338 -7.97606 -6.42764 -3.83813 2.58714 3.05127 3.15342 3.26011 3.32952 3.88217 3.98463 4.21826 4.23403 4.26923 4.41377 4.49439 4.65359 4.67378 4.85706 4.90246 4.99892 5.08605 5.15285 5.16607 5.24323 5.29450 5.33794 5.34577 5.36309 5.45204 5.51548 5.60843 5.62293 5.65008 5.70706 5.73970 5.75494 5.83063 5.90107 5.92126 5.94227 6.01372 6.02001 6.06097 6.20233 6.22874 6.23326 6.35524 6.41621 7.14793 7.37590 7.53233 7.54140 8.04788 8.15238 8.59420 9.16484 9.52850 10.03775 10.74954 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008571 B = 0.003050 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3266.089610 B = 9177.454599 C =11472.326315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 H 0.075 0.925 4 C -0.118 4.118 5 C -0.114 4.114 6 C -0.118 4.118 7 H 0.103 0.897 8 C 0.522 3.478 9 O -0.541 6.541 10 N -0.727 5.727 11 C 0.099 3.901 12 C 0.074 3.926 13 N -0.634 5.634 14 C 0.049 3.951 15 C 0.442 3.558 16 O -0.584 6.584 17 N -0.563 5.563 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.282 1.282 26 C -0.126 4.126 27 C -0.126 4.126 28 C -0.125 4.125 29 C -0.099 4.099 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.399 0.601 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.346 0.654 41 H 0.088 0.912 42 H 0.045 0.955 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.061 0.939 48 H 0.090 0.910 49 H 0.081 0.919 50 H 0.073 0.927 51 H 0.070 0.930 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.599 -7.626 12.873 21.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.094 0.906 4 C -0.156 4.156 5 C -0.152 4.152 6 C -0.139 4.139 7 H 0.121 0.879 8 C 0.308 3.692 9 O -0.418 6.418 10 N -0.379 5.379 11 C -0.027 4.027 12 C -0.019 4.019 13 N -0.266 5.266 14 C -0.084 4.084 15 C 0.227 3.773 16 O -0.468 6.468 17 N -0.199 5.199 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.542 5.542 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.165 4.165 27 C -0.163 4.163 28 C -0.163 4.163 29 C -0.137 4.137 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.234 0.766 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.167 0.833 41 H 0.107 0.893 42 H 0.063 0.937 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.101 0.899 47 H 0.080 0.920 48 H 0.108 0.892 49 H 0.099 0.901 50 H 0.092 0.908 51 H 0.089 0.911 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.141 -8.012 12.742 21.350 hybrid contribution -0.153 1.176 -0.643 1.349 sum -15.295 -6.837 12.100 20.666 Atomic orbital electron populations 1.21783 0.94827 1.01864 1.01598 1.22017 0.95708 0.99405 0.94703 0.90608 1.22194 0.96825 0.98858 0.97711 1.22105 0.98954 1.00809 0.93307 1.22218 0.99616 0.96325 0.95736 0.87901 1.20572 0.80765 0.84655 0.83168 1.90688 1.55273 1.63241 1.32582 1.45971 1.19819 1.31902 1.40192 1.22016 0.95685 0.88032 0.96996 1.22472 0.88623 0.92282 0.98530 1.60099 1.48393 1.08911 1.09204 1.21681 0.98254 0.98002 0.90430 1.19756 0.86614 0.86104 0.84828 1.90521 1.57042 1.66638 1.32619 1.41867 1.40107 1.30570 1.07390 1.19740 1.19529 1.08484 0.95095 0.87876 1.25272 0.98608 0.99340 0.94742 1.69622 1.43867 1.42314 0.98377 0.85805 0.79690 0.80331 0.78553 1.19210 1.20722 1.20761 1.22961 1.00224 0.95286 0.97993 1.22657 0.99154 0.98959 0.95554 1.22988 0.99144 0.98031 0.96127 1.22455 0.93496 1.00430 0.97271 0.92731 0.92575 0.92595 0.91568 0.91554 0.91452 0.90891 0.76597 0.91102 0.91305 0.83339 0.89347 0.93741 0.77485 0.91893 0.90453 0.89855 0.92005 0.89175 0.90070 0.90814 0.91081 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.13 37.16 0.34 -0.70 16 2 C -0.10 -0.81 3.45 -88.90 -0.31 -1.11 16 3 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 4 C -0.12 -0.88 6.37 -25.61 -0.16 -1.04 16 5 C -0.11 -0.92 6.34 -25.61 -0.16 -1.09 16 6 C -0.12 -1.20 3.25 -90.11 -0.29 -1.49 16 7 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 8 C 0.52 6.74 7.01 -10.99 -0.08 6.66 16 9 O -0.54 -8.96 15.73 5.56 0.09 -8.87 16 10 N -0.73 -8.27 5.29 -60.29 -0.32 -8.59 16 11 C 0.10 1.17 4.67 -4.04 -0.02 1.15 16 12 C 0.07 0.85 0.67 -130.70 -0.09 0.76 16 13 N -0.63 -9.43 5.78 -100.30 -0.58 -10.01 16 14 C 0.05 0.84 5.76 -4.98 -0.03 0.82 16 15 C 0.44 10.26 7.83 -10.99 -0.09 10.18 16 16 O -0.58 -15.46 15.84 5.54 0.09 -15.38 16 17 N -0.56 -14.25 5.29 -10.96 -0.06 -14.30 16 18 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.62 13.05 55.50 0.72 -23.90 16 22 Si 0.93 21.04 29.55 -169.99 -5.02 16.01 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 C -0.13 -1.37 7.15 -25.92 -0.19 -1.56 16 27 C -0.13 -1.30 8.00 -25.92 -0.21 -1.51 16 28 C -0.13 -1.23 7.44 -25.83 -0.19 -1.42 16 29 C -0.10 -1.01 5.37 -24.68 -0.13 -1.14 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.47 7.84 -51.93 -0.41 0.07 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.57 7.83 -51.93 -0.41 0.16 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.40 3.99 7.21 -40.82 -0.29 3.70 16 38 H 0.07 0.98 7.38 -51.93 -0.38 0.59 16 39 H 0.07 0.78 7.99 -51.93 -0.41 0.37 16 40 H 0.35 5.20 7.08 -39.29 -0.28 4.92 16 41 H 0.09 1.44 6.54 -51.93 -0.34 1.10 16 42 H 0.04 0.75 7.10 -51.93 -0.37 0.38 16 43 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 44 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.08 0.94 6.63 -51.93 -0.34 0.60 16 46 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 49 H 0.08 0.69 7.99 -51.93 -0.41 0.28 16 50 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 51 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 52 H 0.08 0.93 7.41 -51.93 -0.38 0.54 16 LS Contribution 411.47 15.07 6.20 6.20 Total: -1.00 -32.17 411.47 -9.66 -41.84 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: -8.94 Total: 16.46 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -1.84 Total: 0.53 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: -0.23 Total: -56.79 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: 0.18 Total: -24.25 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.17 -9.66 -41.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700139821.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.145 kcal (2) G-P(sol) polarization free energy of solvation -32.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds