Wall clock time and date at job start Tue Mar 31 2020 20:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47324 * 2 1 4 4 O 1.21285 * 119.99654 * 0.02562 * 3 2 1 5 5 N 1.34772 * 119.99898 * 180.02562 * 3 2 1 6 6 C 1.46502 * 119.99729 * 180.02562 * 5 3 2 7 7 H 1.09000 * 109.47372 * 34.99836 * 6 5 3 8 8 C 1.53004 * 109.47008 * 274.99947 * 6 5 3 9 9 C 1.50703 * 109.47183 * 154.99856 * 6 5 3 10 10 O 1.21285 * 119.99707 * 0.02562 * 9 6 5 11 11 N 1.34778 * 119.99911 * 179.97438 * 9 6 5 12 12 C 1.47199 * 126.69894 * 180.02562 * 11 9 6 13 13 C 1.53765 * 106.40380 * 211.31115 * 12 11 9 14 14 C 1.53001 * 112.06636 * 103.42237 * 13 12 11 15 15 C 1.54313 * 109.07503 * 228.12065 * 13 12 11 16 16 N 1.48110 * 104.71485 * 136.26009 * 15 13 12 17 17 C 1.36939 * 127.84697 * 140.21316 * 16 15 13 18 18 H 1.08002 * 120.00078 * 344.30458 * 17 16 15 19 19 C 1.38811 * 119.99794 * 164.29542 * 17 16 15 20 20 N 1.31622 * 120.00190 * 350.79096 * 19 17 16 21 21 Si 1.86800 * 119.99680 * 170.78503 * 19 17 16 22 22 H 1.48503 * 109.46977 * 94.81597 * 21 19 17 23 23 H 1.48507 * 109.47217 * 214.81203 * 21 19 17 24 24 H 1.48492 * 109.47275 * 334.81472 * 21 19 17 25 25 C 1.48114 * 104.30704 * 320.22070 * 16 15 13 26 26 C 1.55070 * 105.26334 * 341.20679 * 13 12 11 27 27 C 1.53009 * 112.18385 * 123.16610 * 26 13 12 28 28 C 1.47204 * 126.70317 * 359.69208 * 11 9 6 29 29 H 1.09001 * 109.47492 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46757 * 299.99263 * 1 2 3 31 31 H 1.09001 * 109.47432 * 59.99566 * 1 2 3 32 32 H 1.09008 * 109.46429 * 240.00320 * 2 1 3 33 33 H 1.08992 * 109.47278 * 120.00600 * 2 1 3 34 34 H 0.96995 * 120.00370 * 359.97438 * 5 3 2 35 35 H 1.08997 * 109.47240 * 59.99897 * 8 6 5 36 36 H 1.08993 * 109.46884 * 180.02562 * 8 6 5 37 37 H 1.09000 * 109.46964 * 300.00139 * 8 6 5 38 38 H 1.08999 * 110.07334 * 330.54310 * 12 11 9 39 39 H 1.08999 * 110.07378 * 92.07357 * 12 11 9 40 40 H 1.09000 * 109.47318 * 61.01334 * 14 13 12 41 41 H 1.08994 * 109.46843 * 181.01560 * 14 13 12 42 42 H 1.08996 * 109.46994 * 301.00955 * 14 13 12 43 43 H 1.08999 * 110.39289 * 255.06694 * 15 13 12 44 44 H 1.09003 * 110.39223 * 17.45162 * 15 13 12 45 45 H 0.97008 * 119.99691 * 179.97438 * 20 19 17 46 46 H 1.09009 * 110.38860 * 158.58866 * 25 16 15 47 47 H 1.08998 * 110.38875 * 280.85033 * 25 16 15 48 48 H 1.08998 * 109.47031 * 59.99652 * 27 26 13 49 49 H 1.08996 * 109.46796 * 180.02562 * 27 26 13 50 50 H 1.08999 * 109.46759 * 299.99858 * 27 26 13 51 51 H 1.09001 * 110.06455 * 267.92605 * 28 11 9 52 52 H 1.09003 * 110.06764 * 29.45411 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6670 -0.0005 6 6 3.8458 3.0482 0.0000 7 1 3.1735 3.6711 0.5902 8 6 3.8965 3.5718 -1.4367 9 6 5.2276 3.0922 0.5999 10 8 5.7529 2.0704 0.9882 11 7 5.8800 4.2670 0.7038 12 6 7.2257 4.4796 1.2611 13 6 7.2199 5.8845 1.8862 14 6 7.1190 5.8343 3.4120 15 6 8.4720 6.6522 1.4128 16 7 7.9770 8.0063 1.0735 17 6 8.5854 9.2087 1.3172 18 1 9.4006 9.2683 2.0231 19 6 8.1544 10.3510 0.6567 20 7 7.2901 10.2535 -0.3312 21 14 8.8010 12.0267 1.1700 22 1 9.9586 12.3936 0.3152 23 1 7.7279 13.0411 1.0120 24 1 9.2306 11.9776 2.5906 25 6 6.6746 7.7646 0.4110 26 6 6.0114 6.6126 1.2428 27 6 5.0223 7.1272 2.2907 28 6 5.3886 5.5871 0.2761 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8902 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.9877 0.9297 -0.0005 35 1 2.8971 3.5399 -1.8706 36 1 4.2603 4.5992 -1.4363 37 1 4.5688 2.9489 -2.0268 38 1 7.4368 3.7313 2.0250 39 1 7.9717 4.4261 0.4682 40 1 7.9804 5.3024 3.8159 41 1 7.1001 6.8494 3.8084 42 1 6.2044 5.3153 3.6987 43 1 9.2093 6.7071 2.2137 44 1 8.9011 6.1732 0.5327 45 1 6.9886 11.0519 -0.7924 46 1 6.0541 8.6598 0.4553 47 1 6.8260 7.4594 -0.6243 48 1 5.5276 7.8300 2.9531 49 1 4.1932 7.6291 1.7921 50 1 4.6413 6.2885 2.8734 51 1 5.7069 5.7913 -0.7462 52 1 4.3012 5.6214 0.3438 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700623053.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:10 Heat of formation + Delta-G solvation = -46.123135 kcal Electronic energy + Delta-G solvation = -31149.521119 eV Core-core repulsion = 27149.588952 eV Total energy + Delta-G solvation = -3999.932167 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -40.83574 -39.89690 -38.56933 -35.18550 -35.14870 -33.20951 -32.92337 -31.66752 -30.91762 -30.36637 -27.42806 -25.97887 -25.83736 -25.21213 -24.91427 -23.48238 -21.87057 -20.48834 -20.30782 -19.42698 -18.13910 -17.68428 -16.77865 -16.45524 -16.19037 -15.88793 -15.65077 -14.95795 -14.73145 -14.47532 -14.32106 -13.97041 -13.66167 -13.59526 -13.39664 -13.27364 -12.88267 -12.69554 -12.56775 -12.48169 -12.07318 -12.01817 -11.98237 -11.83715 -11.80167 -11.79339 -11.43887 -11.32213 -11.25996 -10.87484 -10.75971 -10.58799 -10.18238 -10.07972 -10.03597 -9.97411 -9.85136 -9.75124 -9.52766 -9.31741 -8.72958 -8.57711 -6.90399 -5.84797 -3.18841 2.40367 2.52893 2.66604 3.25230 3.34410 3.41010 3.42265 4.29079 4.41740 4.49202 4.76817 4.78308 4.79026 4.88629 4.92126 4.96065 5.15922 5.24856 5.38632 5.41787 5.46127 5.50698 5.52119 5.57453 5.61799 5.62337 5.65041 5.78267 5.80579 5.91870 5.93644 5.98108 6.05336 6.09613 6.18680 6.19513 6.22617 6.28882 6.44404 6.47810 6.63346 6.68032 6.76241 6.89519 7.22111 7.28974 7.46941 7.56707 7.66678 7.99292 8.07177 8.15444 9.05943 9.68868 10.45520 11.29000 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022703 B = 0.002652 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.011395 B =10555.901255 C =11071.416632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.513 3.487 4 O -0.541 6.541 5 N -0.714 5.714 6 C 0.129 3.871 7 H 0.113 0.887 8 C -0.166 4.166 9 C 0.527 3.473 10 O -0.549 6.549 11 N -0.604 5.604 12 C 0.117 3.883 13 C -0.082 4.082 14 C -0.121 4.121 15 C 0.138 3.862 16 N -0.591 5.591 17 C -0.225 4.225 18 H 0.076 0.924 19 C -0.004 4.004 20 N -0.915 5.915 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.172 3.828 26 C -0.094 4.094 27 C -0.118 4.118 28 C 0.107 3.893 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.409 0.591 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.048 0.952 41 H 0.066 0.934 42 H 0.048 0.952 43 H 0.049 0.951 44 H 0.025 0.975 45 H 0.254 0.746 46 H 0.089 0.911 47 H 0.026 0.974 48 H 0.066 0.934 49 H 0.052 0.948 50 H 0.044 0.956 51 H 0.079 0.921 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.753 -17.473 0.519 19.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.183 4.183 3 C 0.300 3.700 4 O -0.418 6.418 5 N -0.368 5.368 6 C 0.020 3.980 7 H 0.131 0.869 8 C -0.224 4.224 9 C 0.315 3.685 10 O -0.428 6.428 11 N -0.336 5.336 12 C -0.005 4.005 13 C -0.085 4.085 14 C -0.179 4.179 15 C 0.011 3.989 16 N -0.313 5.313 17 C -0.353 4.353 18 H 0.093 0.907 19 C -0.201 4.201 20 N -0.561 5.561 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.046 3.954 26 C -0.097 4.097 27 C -0.175 4.175 28 C -0.016 4.016 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.246 0.754 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.043 0.957 45 H 0.064 0.936 46 H 0.107 0.893 47 H 0.044 0.956 48 H 0.085 0.915 49 H 0.071 0.929 50 H 0.063 0.937 51 H 0.097 0.903 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.063 -17.152 0.652 19.410 hybrid contribution 0.755 0.566 0.100 0.948 sum -8.308 -16.586 0.752 18.566 Atomic orbital electron populations 1.21533 0.92895 1.01580 1.03441 1.21621 0.98664 0.93481 1.04535 1.20821 0.81664 0.92096 0.75383 1.90713 1.55217 1.46490 1.49358 1.45831 1.07537 1.07960 1.75486 1.20672 0.93339 0.85277 0.98665 0.86945 1.22257 1.03555 1.02522 0.94062 1.20136 0.86968 0.82450 0.78942 1.90668 1.68749 1.32828 1.50567 1.48524 1.18120 1.06858 1.60087 1.22251 0.83123 0.97192 0.97969 1.22327 0.97766 0.92856 0.95524 1.21660 1.00392 1.02117 0.93699 1.21791 0.92718 0.87343 0.97058 1.44867 1.18063 0.99695 1.68692 1.18967 1.14557 0.83334 1.18434 0.90672 1.24867 1.00094 0.98301 0.96880 1.69880 1.35433 1.27796 1.22964 0.86143 0.77917 0.83849 0.78080 1.21571 1.21585 1.20553 1.22102 0.87298 0.94555 0.91481 1.23007 0.94308 0.96611 0.95746 1.21566 0.97824 1.00085 0.98008 1.22551 0.99100 0.81074 0.98890 0.92069 0.91939 0.91927 0.88821 0.88770 0.75416 0.90846 0.90003 0.91874 0.90689 0.91112 0.93287 0.91529 0.93330 0.93226 0.95687 0.93578 0.89307 0.95648 0.91512 0.92936 0.93746 0.90316 0.90743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.20 37.16 0.34 -0.67 16 2 C -0.14 -1.03 6.42 -27.88 -0.18 -1.20 16 3 C 0.51 5.65 7.79 -10.99 -0.09 5.56 16 4 O -0.54 -7.87 15.65 5.55 0.09 -7.78 16 5 N -0.71 -7.70 4.95 -54.93 -0.27 -7.97 16 6 C 0.13 1.55 2.31 -69.08 -0.16 1.39 16 7 H 0.11 1.45 7.30 -51.93 -0.38 1.07 16 8 C -0.17 -1.78 9.25 37.16 0.34 -1.44 16 9 C 0.53 7.46 7.31 -10.98 -0.08 7.38 16 10 O -0.55 -8.99 16.07 5.55 0.09 -8.91 16 11 N -0.60 -8.60 3.31 -171.42 -0.57 -9.17 16 12 C 0.12 1.75 6.20 -3.26 -0.02 1.73 16 13 C -0.08 -1.33 1.07 -152.33 -0.16 -1.49 16 14 C -0.12 -1.81 7.42 37.16 0.28 -1.53 16 15 C 0.14 2.65 6.40 -2.47 -0.02 2.63 16 16 N -0.59 -13.87 3.38 -167.41 -0.57 -14.44 16 17 C -0.22 -5.89 10.35 -15.06 -0.16 -6.05 16 18 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 19 C 0.00 -0.11 5.40 -17.43 -0.09 -0.21 16 20 N -0.91 -25.41 10.87 55.49 0.60 -24.81 16 21 Si 0.91 21.19 29.56 -169.99 -5.03 16.16 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 C 0.17 3.70 5.15 -1.09 -0.01 3.70 16 26 C -0.09 -1.56 1.14 -150.79 -0.17 -1.73 16 27 C -0.12 -1.84 7.62 37.16 0.28 -1.56 16 28 C 0.11 1.50 4.47 -3.10 -0.01 1.49 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.54 8.10 -51.92 -0.42 0.11 16 31 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 32 H 0.09 0.49 8.14 -51.92 -0.42 0.07 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.41 3.97 7.79 -40.82 -0.32 3.65 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.87 5.14 -51.93 -0.27 0.60 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 1.12 7.61 -51.93 -0.40 0.73 16 39 H 0.07 1.06 7.10 -51.93 -0.37 0.69 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 1.08 7.16 -51.93 -0.37 0.70 16 42 H 0.05 0.69 7.10 -51.93 -0.37 0.32 16 43 H 0.05 0.93 7.89 -51.93 -0.41 0.52 16 44 H 0.03 0.49 7.15 -51.93 -0.37 0.12 16 45 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 46 H 0.09 2.18 6.32 -51.92 -0.33 1.85 16 47 H 0.03 0.58 7.24 -51.93 -0.38 0.20 16 48 H 0.07 1.16 7.16 -51.93 -0.37 0.78 16 49 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 50 H 0.04 0.63 7.09 -51.93 -0.37 0.26 16 51 H 0.08 1.12 6.57 -51.93 -0.34 0.78 16 52 H 0.07 0.94 6.62 -51.93 -0.34 0.59 16 LS Contribution 397.19 15.07 5.99 5.99 Total: -1.00 -30.94 397.19 -8.29 -39.23 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -8.73 Total: 3.70 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: 0.10 Total: 8.00 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -0.80 Total: -56.39 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: 0.18 Total: -16.69 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.94 -8.29 -39.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700623053.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.893 kcal (2) G-P(sol) polarization free energy of solvation -30.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds