Wall clock time and date at job start Tue Mar 31 2020 20:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47324 * 2 1 4 4 O 1.21285 * 119.99654 * 0.02562 * 3 2 1 5 5 N 1.34772 * 119.99898 * 180.02562 * 3 2 1 6 6 C 1.46502 * 119.99729 * 180.02562 * 5 3 2 7 7 H 1.09000 * 109.47372 * 34.99836 * 6 5 3 8 8 C 1.53004 * 109.47008 * 274.99947 * 6 5 3 9 9 C 1.50703 * 109.47183 * 154.99856 * 6 5 3 10 10 O 1.21285 * 119.99707 * 0.02562 * 9 6 5 11 11 N 1.34778 * 119.99911 * 179.97438 * 9 6 5 12 12 C 1.47199 * 126.69894 * 180.02562 * 11 9 6 13 13 C 1.53765 * 106.40380 * 211.31115 * 12 11 9 14 14 C 1.53001 * 112.06636 * 103.42237 * 13 12 11 15 15 C 1.54313 * 109.07503 * 228.12065 * 13 12 11 16 16 N 1.48110 * 104.71485 * 136.26009 * 15 13 12 17 17 C 1.36939 * 127.84697 * 140.21316 * 16 15 13 18 18 H 1.08002 * 120.00078 * 344.30458 * 17 16 15 19 19 C 1.38811 * 119.99794 * 164.29542 * 17 16 15 20 20 N 1.31622 * 120.00190 * 350.79096 * 19 17 16 21 21 Si 1.86800 * 119.99680 * 170.78503 * 19 17 16 22 22 H 1.48503 * 109.46977 * 94.81597 * 21 19 17 23 23 H 1.48507 * 109.47217 * 214.81203 * 21 19 17 24 24 H 1.48492 * 109.47275 * 334.81472 * 21 19 17 25 25 C 1.48114 * 104.30704 * 320.22070 * 16 15 13 26 26 C 1.55070 * 105.26334 * 341.20679 * 13 12 11 27 27 C 1.53009 * 112.18385 * 123.16610 * 26 13 12 28 28 C 1.47204 * 126.70317 * 359.69208 * 11 9 6 29 29 H 1.09001 * 109.47492 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46757 * 299.99263 * 1 2 3 31 31 H 1.09001 * 109.47432 * 59.99566 * 1 2 3 32 32 H 1.09008 * 109.46429 * 240.00320 * 2 1 3 33 33 H 1.08992 * 109.47278 * 120.00600 * 2 1 3 34 34 H 0.96995 * 120.00370 * 359.97438 * 5 3 2 35 35 H 1.08997 * 109.47240 * 59.99897 * 8 6 5 36 36 H 1.08993 * 109.46884 * 180.02562 * 8 6 5 37 37 H 1.09000 * 109.46964 * 300.00139 * 8 6 5 38 38 H 1.08999 * 110.07334 * 330.54310 * 12 11 9 39 39 H 1.08999 * 110.07378 * 92.07357 * 12 11 9 40 40 H 1.09000 * 109.47318 * 61.01334 * 14 13 12 41 41 H 1.08994 * 109.46843 * 181.01560 * 14 13 12 42 42 H 1.08996 * 109.46994 * 301.00955 * 14 13 12 43 43 H 1.08999 * 110.39289 * 255.06694 * 15 13 12 44 44 H 1.09003 * 110.39223 * 17.45162 * 15 13 12 45 45 H 0.97008 * 119.99691 * 179.97438 * 20 19 17 46 46 H 1.09009 * 110.38860 * 158.58866 * 25 16 15 47 47 H 1.08998 * 110.38875 * 280.85033 * 25 16 15 48 48 H 1.08998 * 109.47031 * 59.99652 * 27 26 13 49 49 H 1.08996 * 109.46796 * 180.02562 * 27 26 13 50 50 H 1.08999 * 109.46759 * 299.99858 * 27 26 13 51 51 H 1.09001 * 110.06455 * 267.92605 * 28 11 9 52 52 H 1.09003 * 110.06764 * 29.45411 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6670 -0.0005 6 6 3.8458 3.0482 0.0000 7 1 3.1735 3.6711 0.5902 8 6 3.8965 3.5718 -1.4367 9 6 5.2276 3.0922 0.5999 10 8 5.7529 2.0704 0.9882 11 7 5.8800 4.2670 0.7038 12 6 7.2257 4.4796 1.2611 13 6 7.2199 5.8845 1.8862 14 6 7.1190 5.8343 3.4120 15 6 8.4720 6.6522 1.4128 16 7 7.9770 8.0063 1.0735 17 6 8.5854 9.2087 1.3172 18 1 9.4006 9.2683 2.0231 19 6 8.1544 10.3510 0.6567 20 7 7.2901 10.2535 -0.3312 21 14 8.8010 12.0267 1.1700 22 1 9.9586 12.3936 0.3152 23 1 7.7279 13.0411 1.0120 24 1 9.2306 11.9776 2.5906 25 6 6.6746 7.7646 0.4110 26 6 6.0114 6.6126 1.2428 27 6 5.0223 7.1272 2.2907 28 6 5.3886 5.5871 0.2761 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8902 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.9877 0.9297 -0.0005 35 1 2.8971 3.5399 -1.8706 36 1 4.2603 4.5992 -1.4363 37 1 4.5688 2.9489 -2.0268 38 1 7.4368 3.7313 2.0250 39 1 7.9717 4.4261 0.4682 40 1 7.9804 5.3024 3.8159 41 1 7.1001 6.8494 3.8084 42 1 6.2044 5.3153 3.6987 43 1 9.2093 6.7071 2.2137 44 1 8.9011 6.1732 0.5327 45 1 6.9886 11.0519 -0.7924 46 1 6.0541 8.6598 0.4553 47 1 6.8260 7.4594 -0.6243 48 1 5.5276 7.8300 2.9531 49 1 4.1932 7.6291 1.7921 50 1 4.6413 6.2885 2.8734 51 1 5.7069 5.7913 -0.7462 52 1 4.3012 5.6214 0.3438 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700623053.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:09 Heat of formation + Delta-G solvation = -65.774614 kcal Electronic energy + Delta-G solvation = -31150.373271 eV Core-core repulsion = 27149.588952 eV Total energy + Delta-G solvation = -4000.784319 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.02864 -40.94254 -39.76366 -36.66588 -36.15414 -34.62443 -33.79107 -33.00895 -32.50555 -31.45177 -28.81518 -27.55020 -27.05738 -26.46045 -26.09154 -24.54888 -23.29327 -21.80010 -21.34018 -20.57294 -19.47568 -18.72910 -18.51923 -17.53525 -17.22420 -17.01867 -16.63418 -16.49842 -15.97427 -15.91365 -15.57809 -15.14715 -15.03863 -14.75060 -14.64650 -14.40118 -14.07222 -13.82604 -13.71384 -13.44022 -13.37660 -13.21321 -13.17295 -13.10250 -12.98402 -12.74821 -12.70579 -12.61500 -12.53997 -12.35131 -12.08650 -12.00534 -11.86782 -11.72692 -11.43904 -11.30358 -11.16575 -10.98987 -10.89059 -10.67653 -10.25613 -9.78792 -8.81855 -7.86966 -5.21373 1.37932 1.47859 1.49017 1.54851 1.57887 1.69915 2.29914 2.50978 3.16055 3.33326 3.43222 3.56630 3.77538 3.88426 3.91096 3.98884 4.03898 4.16074 4.18611 4.23930 4.27042 4.29942 4.39563 4.56861 4.58271 4.66983 4.71995 4.77699 4.78188 4.85810 4.90498 4.92974 4.96752 5.01738 5.02497 5.08539 5.11390 5.15151 5.24210 5.25343 5.31758 5.36117 5.41100 5.44980 5.53080 5.62324 5.77454 6.24405 6.40074 6.48021 6.89685 7.07253 7.19882 7.73977 8.52278 9.25751 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022703 B = 0.002652 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.011395 B =10555.901255 C =11071.416632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.137 4.137 3 C 0.510 3.490 4 O -0.581 6.581 5 N -0.710 5.710 6 C 0.133 3.867 7 H 0.107 0.893 8 C -0.159 4.159 9 C 0.532 3.468 10 O -0.569 6.569 11 N -0.602 5.602 12 C 0.122 3.878 13 C -0.074 4.074 14 C -0.115 4.115 15 C 0.136 3.864 16 N -0.614 5.614 17 C -0.231 4.231 18 H 0.076 0.924 19 C -0.058 4.058 20 N -0.942 5.942 21 Si 0.970 3.030 22 H -0.289 1.289 23 H -0.294 1.294 24 H -0.271 1.271 25 C 0.179 3.821 26 C -0.085 4.085 27 C -0.111 4.111 28 C 0.114 3.886 29 H 0.085 0.915 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.416 0.584 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.050 0.950 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.025 0.975 45 H 0.248 0.752 46 H 0.054 0.946 47 H 0.006 0.994 48 H 0.046 0.954 49 H 0.056 0.944 50 H 0.066 0.934 51 H 0.078 0.922 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.138 -19.674 1.200 21.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.176 4.176 3 C 0.298 3.702 4 O -0.461 6.461 5 N -0.364 5.364 6 C 0.024 3.976 7 H 0.125 0.875 8 C -0.217 4.217 9 C 0.321 3.679 10 O -0.449 6.449 11 N -0.333 5.333 12 C 0.000 4.000 13 C -0.076 4.076 14 C -0.172 4.172 15 C 0.010 3.990 16 N -0.337 5.337 17 C -0.360 4.360 18 H 0.094 0.906 19 C -0.252 4.252 20 N -0.590 5.590 21 Si 0.799 3.201 22 H -0.217 1.217 23 H -0.221 1.221 24 H -0.195 1.195 25 C 0.053 3.947 26 C -0.088 4.088 27 C -0.169 4.169 28 C -0.009 4.009 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.254 0.746 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.043 0.957 45 H 0.057 0.943 46 H 0.073 0.927 47 H 0.024 0.976 48 H 0.065 0.935 49 H 0.075 0.925 50 H 0.084 0.916 51 H 0.096 0.904 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.429 -19.399 1.348 21.611 hybrid contribution 0.922 1.197 -0.117 1.516 sum -8.507 -18.202 1.231 20.129 Atomic orbital electron populations 1.21543 0.93238 1.02707 1.01968 1.21699 0.98243 0.91023 1.06678 1.21550 0.81164 0.93323 0.74116 1.90698 1.56079 1.48057 1.51257 1.45851 1.07804 1.07577 1.75155 1.20603 0.91746 0.86231 0.99021 0.87549 1.22200 1.03636 1.02603 0.93276 1.20418 0.87378 0.81825 0.78323 1.90662 1.69393 1.33388 1.51413 1.48467 1.17846 1.06940 1.60074 1.22133 0.83608 0.96218 0.98085 1.22206 0.95740 0.93081 0.96587 1.21601 1.01760 1.01551 0.92311 1.21934 0.94271 0.85704 0.97095 1.45114 1.19161 1.00568 1.68847 1.19271 1.14246 0.84682 1.17824 0.90618 1.25577 1.00931 1.01340 0.97346 1.70054 1.36838 1.27998 1.24131 0.85196 0.76945 0.79941 0.78019 1.21668 1.22094 1.19544 1.21914 0.86614 0.94862 0.91357 1.22841 0.94777 0.95355 0.95785 1.21506 0.97428 1.00414 0.97517 1.22434 1.00113 0.80305 0.98011 0.89585 0.93589 0.93278 0.86262 0.86775 0.74591 0.90943 0.89944 0.91269 0.90008 0.91198 0.91736 0.93104 0.92095 0.92927 0.95746 0.94256 0.92723 0.97592 0.93503 0.92470 0.91561 0.90381 0.88672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.20 71.98 0.66 -1.12 16 2 C -0.14 -1.59 6.42 29.85 0.19 -1.40 16 3 C 0.51 10.32 7.79 87.66 0.68 11.00 16 4 O -0.58 -16.45 15.65 -3.05 -0.05 -16.49 16 5 N -0.71 -13.84 4.95 -446.08 -2.21 -16.05 16 6 C 0.13 2.95 2.31 44.25 0.10 3.05 16 7 H 0.11 2.56 7.30 -2.39 -0.02 2.55 16 8 C -0.16 -3.16 9.25 71.98 0.67 -2.49 16 9 C 0.53 13.87 7.31 87.66 0.64 14.51 16 10 O -0.57 -17.27 16.07 -3.05 -0.05 -17.32 16 11 N -0.60 -15.92 3.31 -814.64 -2.70 -18.61 16 12 C 0.12 3.41 6.20 86.50 0.54 3.95 16 13 C -0.07 -2.29 1.07 -50.77 -0.05 -2.34 16 14 C -0.12 -3.20 7.42 71.98 0.53 -2.66 16 15 C 0.14 5.18 6.40 86.52 0.55 5.74 16 16 N -0.61 -29.34 3.38 -683.57 -2.31 -31.65 16 17 C -0.23 -12.32 10.35 84.03 0.87 -11.45 16 18 H 0.08 3.92 7.85 -2.91 -0.02 3.89 16 19 C -0.06 -3.16 5.40 84.86 0.46 -2.70 16 20 N -0.94 -54.00 10.87 21.65 0.24 -53.77 16 21 Si 0.97 44.29 29.56 68.60 2.03 46.32 16 22 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 23 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 25 C 0.18 7.89 5.15 87.40 0.45 8.34 16 26 C -0.09 -2.77 1.14 -49.77 -0.06 -2.82 16 27 C -0.11 -3.38 7.62 71.99 0.55 -2.84 16 28 C 0.11 3.06 4.47 86.61 0.39 3.45 16 29 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.04 0.74 8.10 -2.38 -0.02 0.72 16 31 H 0.05 0.77 8.10 -2.39 -0.02 0.75 16 32 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.42 7.05 7.79 -92.71 -0.72 6.32 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 1.62 5.14 -2.39 -0.01 1.61 16 37 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.08 2.22 7.61 -2.39 -0.02 2.21 16 39 H 0.07 1.99 7.10 -2.39 -0.02 1.97 16 40 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.05 1.58 7.16 -2.39 -0.02 1.57 16 42 H 0.06 1.55 7.10 -2.39 -0.02 1.54 16 43 H 0.05 1.95 7.89 -2.39 -0.02 1.93 16 44 H 0.02 0.95 7.15 -2.39 -0.02 0.93 16 45 H 0.25 13.91 8.31 -92.70 -0.77 13.14 16 46 H 0.05 2.78 6.32 -2.38 -0.02 2.77 16 47 H 0.01 0.29 7.24 -2.39 -0.02 0.27 16 48 H 0.05 1.61 7.16 -2.39 -0.02 1.59 16 49 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 50 H 0.07 1.73 7.09 -2.39 -0.02 1.71 16 51 H 0.08 2.16 6.57 -2.39 -0.02 2.14 16 52 H 0.10 2.20 6.62 -2.39 -0.02 2.19 16 Total: -1.00 -67.95 397.19 2.32 -65.63 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.20 Total: 21.74 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: 7.17 Total: 20.21 kcal Atomic # 7 Polarization: -113.10 SS G_CDS: -6.98 Total: -120.08 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: -0.10 Total: -33.82 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -67.95 2.32 -65.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700623053.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.144 kcal (2) G-P(sol) polarization free energy of solvation -67.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds