Wall clock time and date at job start Tue Mar 31 2020 22:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08988 * 109.47216 * 2 1 4 4 N 1.46505 * 109.46944 * 120.00114 * 2 1 3 5 5 C 1.34775 * 119.99514 * 274.99758 * 4 2 1 6 6 O 1.21283 * 120.00330 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00080 * 180.02562 * 5 4 2 8 8 H 1.09002 * 115.54947 * 325.67432 * 7 5 4 9 9 C 1.53002 * 117.50056 * 111.37530 * 7 5 4 10 10 C 1.52994 * 59.99864 * 107.49369 * 9 7 5 11 11 H 1.08999 * 117.52011 * 252.51956 * 10 9 7 12 12 C 1.52998 * 117.49742 * 107.49277 * 10 9 7 13 13 C 1.52999 * 109.47132 * 239.99497 * 2 1 3 14 14 C 1.53121 * 109.52109 * 64.99884 * 13 2 1 15 15 C 1.53038 * 109.28001 * 182.44158 * 14 13 2 16 16 N 1.46842 * 109.51484 * 59.18117 * 15 14 13 17 17 C 1.46900 * 110.99858 * 174.15405 * 16 15 14 18 18 C 1.50697 * 109.47347 * 293.64624 * 17 16 15 19 19 O 1.21294 * 120.00290 * 353.78831 * 18 17 16 20 20 N 1.34776 * 119.99825 * 173.78135 * 18 17 16 21 21 C 1.37098 * 120.00081 * 180.02562 * 20 18 17 22 22 H 1.08006 * 119.99920 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00384 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99989 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00422 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47372 * 89.99518 * 25 23 21 27 27 H 1.48497 * 109.47185 * 210.00167 * 25 23 21 28 28 H 1.48506 * 109.46689 * 329.99677 * 25 23 21 29 29 C 1.46848 * 111.20327 * 298.24818 * 16 15 14 30 30 C 1.53033 * 109.51325 * 61.75459 * 29 16 15 31 31 H 1.09005 * 109.47201 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46951 * 299.99898 * 1 2 3 33 33 H 1.08993 * 109.47088 * 60.00300 * 1 2 3 34 34 H 0.96997 * 120.00292 * 94.99836 * 4 2 1 35 35 H 1.08997 * 117.50076 * 214.98445 * 9 7 5 36 36 H 1.09000 * 117.49736 * 0.02562 * 9 7 5 37 37 H 1.09000 * 109.47450 * 351.37511 * 12 10 9 38 38 H 1.09001 * 109.47304 * 111.37607 * 12 10 9 39 39 H 1.09004 * 109.47347 * 231.37155 * 12 10 9 40 40 H 1.08995 * 109.57928 * 185.16205 * 13 2 1 41 41 H 1.09001 * 109.50089 * 62.50341 * 14 13 2 42 42 H 1.08994 * 109.50499 * 302.38225 * 14 13 2 43 43 H 1.08999 * 109.46159 * 179.19893 * 15 14 13 44 44 H 1.09001 * 109.45754 * 299.17727 * 15 14 13 45 45 H 1.08997 * 109.47209 * 53.65312 * 17 16 15 46 46 H 1.09005 * 109.46892 * 173.64639 * 17 16 15 47 47 H 0.97000 * 120.00359 * 0.02562 * 20 18 17 48 48 H 0.97001 * 120.00456 * 180.02562 * 24 23 21 49 49 H 1.08995 * 109.46497 * 301.73722 * 29 16 15 50 50 H 1.09001 * 109.45270 * 181.76161 * 29 16 15 51 51 H 1.09004 * 109.49772 * 180.87698 * 30 29 16 52 52 H 1.08997 * 109.53750 * 60.77824 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8590 1.1587 2.4114 7 6 2.6498 -0.7284 3.5875 8 1 2.3528 -1.7729 3.6818 9 6 4.0316 -0.3362 4.1146 10 6 2.7738 0.0897 4.8744 11 1 2.4913 1.1415 4.8313 12 6 2.4719 -0.6210 6.1952 13 6 2.0400 -0.7214 -1.2492 14 6 1.6355 0.0684 -2.4971 15 6 2.0950 -0.6886 -3.7452 16 7 1.4779 -2.0209 -3.7657 17 6 1.7858 -2.7244 -5.0180 18 6 1.1247 -2.0125 -6.1699 19 8 0.3717 -1.0854 -5.9582 20 7 1.3702 -2.4057 -7.4355 21 6 0.7691 -1.7577 -8.4835 22 1 0.0992 -0.9317 -8.2950 23 6 1.0218 -2.1634 -9.7882 24 7 1.8373 -3.1680 -10.0176 25 14 0.2034 -1.2799 -11.2162 26 1 1.0653 -0.1560 -11.6623 27 1 0.0084 -2.2307 -12.3401 28 1 -1.1143 -0.7509 -10.7811 29 6 1.8896 -2.8150 -2.6011 30 6 1.4239 -2.1214 -1.3190 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 2.2490 -1.6318 1.1527 35 1 4.6440 -1.1227 4.5556 36 1 4.5768 0.4359 3.5716 37 1 3.1556 -1.4606 6.3207 38 1 2.5996 0.0782 7.0216 39 1 1.4452 -0.9870 6.1845 40 1 3.1260 -0.8031 -1.2059 41 1 2.1059 1.0514 -2.4739 42 1 0.5519 0.1833 -2.5196 43 1 1.7960 -0.1360 -4.6358 44 1 3.1800 -0.7913 -3.7286 45 1 2.8649 -2.7388 -5.1708 46 1 1.4134 -3.7473 -4.9611 47 1 1.9721 -3.1472 -7.6048 48 1 2.0140 -3.4511 -10.9284 49 1 2.9756 -2.9076 -2.5902 50 1 1.4412 -3.8067 -2.6611 51 1 1.7432 -2.7030 -0.4541 52 1 0.3369 -2.0409 -1.3223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701006638.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:21 Heat of formation + Delta-G solvation = -58.408998 kcal Electronic energy + Delta-G solvation = -29282.681130 eV Core-core repulsion = 25282.216208 eV Total energy + Delta-G solvation = -4000.464922 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.53234 -39.39279 -38.06920 -37.12719 -35.75204 -33.90052 -32.99484 -31.22375 -30.74164 -30.15612 -28.99617 -27.18938 -25.36983 -24.50238 -23.48069 -23.01991 -21.47713 -20.88046 -20.25266 -19.17630 -19.12163 -17.85875 -17.75624 -16.36214 -15.94611 -15.53294 -15.40201 -15.14377 -14.92614 -14.62517 -14.47632 -14.25505 -13.92538 -13.85555 -13.69960 -13.58060 -13.18310 -13.10464 -12.96407 -12.68948 -12.44457 -12.30186 -11.94414 -11.84355 -11.79199 -11.70079 -11.46016 -11.30656 -11.01835 -10.86708 -10.78159 -10.69250 -10.50929 -10.39699 -10.34749 -10.22150 -10.17293 -9.93866 -9.45797 -9.26832 -8.41249 -7.95760 -7.83097 -6.40672 -3.81344 2.24681 2.86123 3.18387 3.27017 3.33002 3.42965 3.92724 3.99593 4.24788 4.27297 4.34547 4.39530 4.53643 4.64018 4.77389 4.82413 4.89570 5.04007 5.16010 5.20318 5.22699 5.26928 5.28530 5.32531 5.36301 5.41446 5.48846 5.52409 5.60529 5.62286 5.66207 5.68745 5.73988 5.84248 5.87507 5.88861 5.89746 6.01643 6.06685 6.11047 6.23465 6.29845 6.31950 6.46398 6.54340 7.28323 7.32417 7.45121 7.56207 8.01433 8.07949 8.63490 9.19624 9.56258 10.08336 10.77130 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.037496 B = 0.001748 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.567306 B =16014.141160 C =16346.451085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.148 3.852 3 H 0.087 0.913 4 N -0.720 5.720 5 C 0.542 3.458 6 O -0.542 6.542 7 C -0.193 4.193 8 H 0.122 0.878 9 C -0.149 4.149 10 C -0.122 4.122 11 H 0.117 0.883 12 C -0.124 4.124 13 C -0.095 4.095 14 C -0.106 4.106 15 C 0.057 3.943 16 N -0.513 5.513 17 C 0.046 3.954 18 C 0.443 3.557 19 O -0.576 6.576 20 N -0.566 5.566 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.056 3.944 30 C -0.112 4.112 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.399 0.601 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.099 0.901 44 H 0.021 0.979 45 H 0.045 0.955 46 H 0.088 0.912 47 H 0.391 0.609 48 H 0.271 0.729 49 H 0.027 0.973 50 H 0.073 0.927 51 H 0.059 0.941 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.325 -0.682 27.152 27.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.044 3.956 3 H 0.105 0.895 4 N -0.371 5.371 5 C 0.329 3.671 6 O -0.419 6.419 7 C -0.214 4.214 8 H 0.140 0.860 9 C -0.187 4.187 10 C -0.141 4.141 11 H 0.135 0.865 12 C -0.181 4.181 13 C -0.114 4.114 14 C -0.144 4.144 15 C -0.071 4.071 16 N -0.238 5.238 17 C -0.085 4.085 18 C 0.229 3.771 19 O -0.459 6.459 20 N -0.203 5.203 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.205 1.205 27 H -0.210 1.210 28 H -0.194 1.194 29 C -0.073 4.073 30 C -0.150 4.150 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.234 0.766 35 H 0.122 0.878 36 H 0.117 0.883 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.117 0.883 44 H 0.039 0.961 45 H 0.063 0.937 46 H 0.106 0.894 47 H 0.224 0.776 48 H 0.081 0.919 49 H 0.046 0.954 50 H 0.092 0.908 51 H 0.077 0.923 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.145 0.774 27.154 27.480 hybrid contribution 1.051 -0.899 -1.113 1.775 sum 5.196 -0.125 26.042 26.555 Atomic orbital electron populations 1.22275 0.94951 1.02573 1.02607 1.21005 0.94503 0.97044 0.83048 0.89543 1.46095 1.67246 1.14142 1.09647 1.19660 0.77055 0.86710 0.83718 1.90698 1.50179 1.16070 1.84949 1.22334 1.03598 1.00981 0.94525 0.85981 1.23102 0.89468 1.03408 1.02679 1.22374 1.00623 1.00296 0.90792 0.86497 1.21406 1.01823 0.99998 0.94884 1.21504 1.00064 0.95798 0.94073 1.21608 1.02841 0.97592 0.92375 1.22160 0.94841 0.90275 0.99829 1.61491 1.59359 1.02508 1.00446 1.21843 0.98299 0.98327 0.90026 1.19763 0.86502 0.87278 0.83577 1.90506 1.39780 1.31352 1.84302 1.41883 1.42235 1.31836 1.04323 1.19698 1.24473 1.14375 0.84233 0.87928 1.25247 0.97193 0.96723 0.98779 1.69612 1.35996 1.26875 1.21936 0.85868 0.79620 0.78729 0.80133 1.20461 1.20957 1.19419 1.22078 0.97483 0.97042 0.90667 1.21711 1.02262 0.94739 0.96268 0.91900 0.92601 0.90825 0.76612 0.87779 0.88278 0.92341 0.91639 0.91915 0.91087 0.91668 0.90149 0.88328 0.96080 0.93723 0.89386 0.77552 0.91926 0.95439 0.90850 0.92276 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 8.75 37.16 0.33 -1.41 16 2 C 0.15 1.50 2.36 -67.93 -0.16 1.34 16 3 H 0.09 1.03 7.58 -51.94 -0.39 0.64 16 4 N -0.72 -6.25 5.01 -53.81 -0.27 -6.52 16 5 C 0.54 5.60 7.58 -10.99 -0.08 5.52 16 6 O -0.54 -7.75 15.92 5.55 0.09 -7.66 16 7 C -0.19 -1.41 5.91 -91.77 -0.54 -1.95 16 8 H 0.12 0.65 8.14 -51.93 -0.42 0.22 16 9 C -0.15 -0.94 9.88 -26.73 -0.26 -1.21 16 10 C -0.12 -0.88 5.92 -90.63 -0.54 -1.41 16 11 H 0.12 1.05 7.67 -51.93 -0.40 0.65 16 12 C -0.12 -0.63 10.19 37.16 0.38 -0.25 16 13 C -0.10 -0.97 2.19 -90.49 -0.20 -1.17 16 14 C -0.11 -1.35 5.19 -26.65 -0.14 -1.49 16 15 C 0.06 0.89 5.12 -3.84 -0.02 0.87 16 16 N -0.51 -8.24 4.35 -236.12 -1.03 -9.27 16 17 C 0.05 0.82 5.45 -4.98 -0.03 0.79 16 18 C 0.44 10.35 7.31 -10.99 -0.08 10.27 16 19 O -0.58 -15.33 14.28 5.55 0.08 -15.25 16 20 N -0.57 -14.25 5.29 -10.96 -0.06 -14.31 16 21 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 22 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.50 13.05 55.50 0.72 -23.77 16 25 Si 0.93 21.05 29.55 -169.99 -5.02 16.02 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 29 C 0.06 0.67 5.46 -3.84 -0.02 0.64 16 30 C -0.11 -1.10 4.80 -26.65 -0.13 -1.23 16 31 H 0.06 0.61 6.29 -51.93 -0.33 0.29 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.80 6.52 -51.93 -0.34 0.46 16 34 H 0.40 2.53 7.24 -40.82 -0.30 2.24 16 35 H 0.10 0.46 8.05 -51.93 -0.42 0.05 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.24 7.90 -51.93 -0.41 -0.17 16 38 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 1.12 6.47 -51.93 -0.34 0.79 16 43 H 0.10 1.92 6.05 -51.93 -0.31 1.61 16 44 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.04 0.73 8.12 -51.93 -0.42 0.31 16 46 H 0.09 1.40 7.98 -51.93 -0.41 0.99 16 47 H 0.39 9.45 7.90 -40.82 -0.32 9.12 16 48 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.07 0.83 8.01 -51.93 -0.42 0.41 16 51 H 0.06 0.43 6.87 -51.93 -0.36 0.08 16 52 H 0.08 0.89 6.21 -51.93 -0.32 0.57 16 LS Contribution 407.62 15.07 6.14 6.14 Total: -1.00 -32.63 407.62 -9.88 -42.51 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -8.80 Total: 10.73 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -1.74 Total: 1.38 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: -0.63 Total: -53.87 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: 0.17 Total: -22.91 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.63 -9.88 -42.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701006638.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.901 kcal (2) G-P(sol) polarization free energy of solvation -32.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds