Wall clock time and date at job start Tue Mar 31 2020 22:30:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08988 * 109.47216 * 2 1
4 4 N 1.46505 * 109.46944 * 120.00114 * 2 1 3
5 5 C 1.34775 * 119.99514 * 274.99758 * 4 2 1
6 6 O 1.21283 * 120.00330 * 359.97438 * 5 4 2
7 7 C 1.50701 * 120.00080 * 180.02562 * 5 4 2
8 8 H 1.09002 * 115.54947 * 325.67432 * 7 5 4
9 9 C 1.53002 * 117.50056 * 111.37530 * 7 5 4
10 10 C 1.52994 * 59.99864 * 107.49369 * 9 7 5
11 11 H 1.08999 * 117.52011 * 252.51956 * 10 9 7
12 12 C 1.52998 * 117.49742 * 107.49277 * 10 9 7
13 13 C 1.52999 * 109.47132 * 239.99497 * 2 1 3
14 14 C 1.53121 * 109.52109 * 64.99884 * 13 2 1
15 15 C 1.53038 * 109.28001 * 182.44158 * 14 13 2
16 16 N 1.46842 * 109.51484 * 59.18117 * 15 14 13
17 17 C 1.46900 * 110.99858 * 174.15405 * 16 15 14
18 18 C 1.50697 * 109.47347 * 293.64624 * 17 16 15
19 19 O 1.21294 * 120.00290 * 353.78831 * 18 17 16
20 20 N 1.34776 * 119.99825 * 173.78135 * 18 17 16
21 21 C 1.37098 * 120.00081 * 180.02562 * 20 18 17
22 22 H 1.08006 * 119.99920 * 0.02562 * 21 20 18
23 23 C 1.38946 * 120.00384 * 180.02562 * 21 20 18
24 24 N 1.31413 * 119.99989 * 359.97438 * 23 21 20
25 25 Si 1.86801 * 120.00422 * 180.02562 * 23 21 20
26 26 H 1.48496 * 109.47372 * 89.99518 * 25 23 21
27 27 H 1.48497 * 109.47185 * 210.00167 * 25 23 21
28 28 H 1.48506 * 109.46689 * 329.99677 * 25 23 21
29 29 C 1.46848 * 111.20327 * 298.24818 * 16 15 14
30 30 C 1.53033 * 109.51325 * 61.75459 * 29 16 15
31 31 H 1.09005 * 109.47201 * 180.02562 * 1 2 3
32 32 H 1.09005 * 109.46951 * 299.99898 * 1 2 3
33 33 H 1.08993 * 109.47088 * 60.00300 * 1 2 3
34 34 H 0.96997 * 120.00292 * 94.99836 * 4 2 1
35 35 H 1.08997 * 117.50076 * 214.98445 * 9 7 5
36 36 H 1.09000 * 117.49736 * 0.02562 * 9 7 5
37 37 H 1.09000 * 109.47450 * 351.37511 * 12 10 9
38 38 H 1.09001 * 109.47304 * 111.37607 * 12 10 9
39 39 H 1.09004 * 109.47347 * 231.37155 * 12 10 9
40 40 H 1.08995 * 109.57928 * 185.16205 * 13 2 1
41 41 H 1.09001 * 109.50089 * 62.50341 * 14 13 2
42 42 H 1.08994 * 109.50499 * 302.38225 * 14 13 2
43 43 H 1.08999 * 109.46159 * 179.19893 * 15 14 13
44 44 H 1.09001 * 109.45754 * 299.17727 * 15 14 13
45 45 H 1.08997 * 109.47209 * 53.65312 * 17 16 15
46 46 H 1.09005 * 109.46892 * 173.64639 * 17 16 15
47 47 H 0.97000 * 120.00359 * 0.02562 * 20 18 17
48 48 H 0.97001 * 120.00456 * 180.02562 * 24 23 21
49 49 H 1.08995 * 109.46497 * 301.73722 * 29 16 15
50 50 H 1.09001 * 109.45270 * 181.76161 * 29 16 15
51 51 H 1.09004 * 109.49772 * 180.87698 * 30 29 16
52 52 H 1.08997 * 109.53750 * 60.77824 * 30 29 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0275 0.0000
4 7 2.0183 -0.6907 1.1962
5 6 2.1470 -0.0182 2.3571
6 8 1.8590 1.1587 2.4114
7 6 2.6498 -0.7284 3.5875
8 1 2.3528 -1.7729 3.6818
9 6 4.0316 -0.3362 4.1146
10 6 2.7738 0.0897 4.8744
11 1 2.4913 1.1415 4.8313
12 6 2.4719 -0.6210 6.1952
13 6 2.0400 -0.7214 -1.2492
14 6 1.6355 0.0684 -2.4971
15 6 2.0950 -0.6886 -3.7452
16 7 1.4779 -2.0209 -3.7657
17 6 1.7858 -2.7244 -5.0180
18 6 1.1247 -2.0125 -6.1699
19 8 0.3717 -1.0854 -5.9582
20 7 1.3702 -2.4057 -7.4355
21 6 0.7691 -1.7577 -8.4835
22 1 0.0992 -0.9317 -8.2950
23 6 1.0218 -2.1634 -9.7882
24 7 1.8373 -3.1680 -10.0176
25 14 0.2034 -1.2799 -11.2162
26 1 1.0653 -0.1560 -11.6623
27 1 0.0084 -2.2307 -12.3401
28 1 -1.1143 -0.7509 -10.7811
29 6 1.8896 -2.8150 -2.6011
30 6 1.4239 -2.1214 -1.3190
31 1 -0.3634 -1.0277 0.0005
32 1 -0.3633 0.5138 0.8900
33 1 -0.3633 0.5138 -0.8900
34 1 2.2490 -1.6318 1.1527
35 1 4.6440 -1.1227 4.5556
36 1 4.5768 0.4359 3.5716
37 1 3.1556 -1.4606 6.3207
38 1 2.5996 0.0782 7.0216
39 1 1.4452 -0.9870 6.1845
40 1 3.1260 -0.8031 -1.2059
41 1 2.1059 1.0514 -2.4739
42 1 0.5519 0.1833 -2.5196
43 1 1.7960 -0.1360 -4.6358
44 1 3.1800 -0.7913 -3.7286
45 1 2.8649 -2.7388 -5.1708
46 1 1.4134 -3.7473 -4.9611
47 1 1.9721 -3.1472 -7.6048
48 1 2.0140 -3.4511 -10.9284
49 1 2.9756 -2.9076 -2.5902
50 1 1.4412 -3.8067 -2.6611
51 1 1.7432 -2.7030 -0.4541
52 1 0.3369 -2.0409 -1.3223
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001701006638.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:30:17
Heat of formation + Delta-G solvation = -81.100900 kcal
Electronic energy + Delta-G solvation = -29283.665125 eV
Core-core repulsion = 25282.216208 eV
Total energy + Delta-G solvation = -4001.448917 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 337.215 amu
Computer time = 2.65 seconds
Orbital eigenvalues (eV)
-41.37227 -40.60093 -39.54286 -37.92432 -36.81561 -35.85916 -34.04035 -33.22550
-31.75261 -31.14908 -29.48289 -28.58464 -26.66866 -25.73380 -24.56982 -24.01007
-22.28609 -21.66838 -21.00273 -20.92772 -20.06215 -19.85552 -18.48189 -17.74316
-17.14475 -16.76774 -16.48082 -16.29219 -16.13172 -15.89466 -15.63852 -15.41844
-15.25479 -15.02413 -14.82229 -14.35074 -14.20300 -13.99413 -13.89453 -13.69237
-13.57715 -13.46791 -13.14805 -12.93683 -12.86164 -12.83706 -12.68464 -12.43970
-12.40197 -12.30871 -12.12127 -11.84967 -11.68545 -11.52517 -11.34973 -11.27796
-11.12692 -11.03460 -10.74246 -10.25625 -10.08784 -9.97806 -9.12657 -8.45481
-5.93789 1.37860 1.41475 1.49722 1.54067 2.08376 2.13138 2.29207
2.81592 2.87307 3.21622 3.41474 3.61673 3.71480 3.78701 3.80538
3.87992 3.91652 4.19630 4.23355 4.26289 4.33372 4.36681 4.42317
4.43656 4.51513 4.53170 4.59332 4.63939 4.74300 4.77273 4.82054
4.88167 4.91761 4.95560 4.96972 5.00687 5.07177 5.08955 5.21495
5.22870 5.23702 5.28511 5.41852 5.42597 5.51091 5.57643 5.93657
6.13862 6.32919 6.58467 6.62996 7.15033 7.27646 7.59183 8.15608
8.71946
Molecular weight = 337.22amu
Principal moments of inertia in cm(-1)
A = 0.037496 B = 0.001748 C = 0.001712
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 746.567306 B =16014.141160 C =16346.451085
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.156 3.844
3 H 0.065 0.935
4 N -0.706 5.706
5 C 0.536 3.464
6 O -0.590 6.590
7 C -0.193 4.193
8 H 0.151 0.849
9 C -0.137 4.137
10 C -0.133 4.133
11 H 0.089 0.911
12 C -0.119 4.119
13 C -0.081 4.081
14 C -0.102 4.102
15 C 0.060 3.940
16 N -0.533 5.533
17 C 0.058 3.942
18 C 0.441 3.559
19 O -0.614 6.614
20 N -0.576 5.576
21 C -0.332 4.332
22 H 0.077 0.923
23 C -0.012 4.012
24 N -0.921 5.921
25 Si 0.991 3.009
26 H -0.272 1.272
27 H -0.270 1.270
28 H -0.274 1.274
29 C 0.054 3.946
30 C -0.107 4.107
31 H 0.074 0.926
32 H 0.041 0.959
33 H 0.063 0.937
34 H 0.415 0.585
35 H 0.132 0.868
36 H 0.085 0.915
37 H 0.075 0.925
38 H 0.067 0.933
39 H 0.062 0.938
40 H 0.083 0.917
41 H 0.068 0.932
42 H 0.063 0.937
43 H 0.051 0.949
44 H 0.032 0.968
45 H 0.063 0.937
46 H 0.111 0.889
47 H 0.395 0.605
48 H 0.277 0.723
49 H 0.043 0.957
50 H 0.086 0.914
51 H 0.096 0.904
52 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.524 -2.989 28.757 29.638
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C 0.051 3.949
3 H 0.083 0.917
4 N -0.358 5.358
5 C 0.324 3.676
6 O -0.471 6.471
7 C -0.214 4.214
8 H 0.169 0.831
9 C -0.175 4.175
10 C -0.152 4.152
11 H 0.107 0.893
12 C -0.176 4.176
13 C -0.100 4.100
14 C -0.140 4.140
15 C -0.068 4.068
16 N -0.258 5.258
17 C -0.073 4.073
18 C 0.228 3.772
19 O -0.500 6.500
20 N -0.214 5.214
21 C -0.462 4.462
22 H 0.095 0.905
23 C -0.212 4.212
24 N -0.562 5.562
25 Si 0.815 3.185
26 H -0.197 1.197
27 H -0.195 1.195
28 H -0.199 1.199
29 C -0.073 4.073
30 C -0.145 4.145
31 H 0.093 0.907
32 H 0.060 0.940
33 H 0.082 0.918
34 H 0.253 0.747
35 H 0.150 0.850
36 H 0.104 0.896
37 H 0.094 0.906
38 H 0.086 0.914
39 H 0.081 0.919
40 H 0.101 0.899
41 H 0.087 0.913
42 H 0.082 0.918
43 H 0.070 0.930
44 H 0.051 0.949
45 H 0.081 0.919
46 H 0.129 0.871
47 H 0.229 0.771
48 H 0.086 0.914
49 H 0.061 0.939
50 H 0.105 0.895
51 H 0.115 0.885
52 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges 5.370 -1.588 28.771 29.311
hybrid contribution 0.672 -0.136 -1.579 1.722
sum 6.042 -1.725 27.191 27.908
Atomic orbital electron populations
1.22215 0.95262 1.02956 1.01452 1.20763 0.94121 0.96256 0.83748
0.91668 1.45936 1.66401 1.14746 1.08689 1.20262 0.76252 0.86268
0.84801 1.90683 1.52313 1.18326 1.85736 1.22393 1.04313 1.01874
0.92793 0.83109 1.23182 0.89054 1.03537 1.01687 1.22389 1.01624
0.99239 0.91981 0.89268 1.21392 1.02258 1.00357 0.93576 1.21352
1.00675 0.95679 0.92306 1.21534 1.01772 0.98028 0.92661 1.22015
0.95388 0.90302 0.99063 1.61465 1.60346 1.02937 1.01090 1.21717
0.98632 0.98453 0.88480 1.20852 0.85461 0.86528 0.84361 1.90482
1.41391 1.33059 1.85026 1.41950 1.42635 1.32109 1.04706 1.19644
1.25657 1.14977 0.85884 0.90459 1.25995 0.97429 0.97251 1.00525
1.69669 1.36323 1.27384 1.22814 0.84954 0.78373 0.77962 0.77205
1.19739 1.19503 1.19906 1.22230 0.98616 0.97118 0.89366 1.21723
1.01615 0.94427 0.96729 0.90681 0.93951 0.91802 0.74735 0.85043
0.89601 0.90641 0.91405 0.91890 0.89907 0.91292 0.91813 0.93020
0.94949 0.91901 0.87091 0.77093 0.91370 0.93869 0.89530 0.88521
0.91083
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.32 8.75 71.98 0.63 -2.69 16
2 C 0.16 3.00 2.36 44.99 0.11 3.11 16
3 H 0.07 1.58 7.58 -2.39 -0.02 1.56 16
4 N -0.71 -10.74 5.01 -442.54 -2.22 -12.96 16
5 C 0.54 10.52 7.58 87.66 0.66 11.19 16
6 O -0.59 -17.27 15.92 -3.04 -0.05 -17.32 16
7 C -0.19 -2.38 5.91 -11.54 -0.07 -2.45 16
8 H 0.15 0.98 8.14 -2.39 -0.02 0.97 16
9 C -0.14 -1.43 9.88 30.59 0.30 -1.13 16
10 C -0.13 -1.76 5.92 -10.80 -0.06 -1.82 16
11 H 0.09 1.68 7.67 -2.39 -0.02 1.66 16
12 C -0.12 -0.96 10.19 71.98 0.73 -0.22 16
13 C -0.08 -1.49 2.19 -10.71 -0.02 -1.52 16
14 C -0.10 -2.60 5.19 30.65 0.16 -2.44 16
15 C 0.06 1.90 5.12 86.33 0.44 2.35 16
16 N -0.53 -16.48 4.35 -900.95 -3.92 -20.40 16
17 C 0.06 1.99 5.45 85.56 0.47 2.46 16
18 C 0.44 21.01 7.31 87.66 0.64 21.65 16
19 O -0.61 -34.07 14.28 -3.07 -0.04 -34.12 16
20 N -0.58 -29.68 5.29 -306.98 -1.62 -31.31 16
21 C -0.33 -18.99 9.68 84.04 0.81 -18.17 16
22 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16
23 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16
24 N -0.92 -49.79 13.05 21.66 0.28 -49.51 16
25 Si 0.99 43.28 29.55 68.60 2.03 45.31 16
26 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16
27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16
28 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16
29 C 0.05 1.11 5.46 86.32 0.47 1.58 16
30 C -0.11 -1.76 4.80 30.65 0.15 -1.61 16
31 H 0.07 1.35 6.29 -2.38 -0.02 1.34 16
32 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16
33 H 0.06 1.43 6.52 -2.39 -0.02 1.42 16
34 H 0.41 3.66 7.24 -92.71 -0.67 2.99 16
35 H 0.13 0.66 8.05 -2.39 -0.02 0.65 16
36 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16
37 H 0.07 0.36 7.90 -2.39 -0.02 0.34 16
38 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16
39 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16
40 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16
41 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16
42 H 0.06 1.84 6.47 -2.39 -0.02 1.83 16
43 H 0.05 2.12 6.05 -2.39 -0.01 2.10 16
44 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16
45 H 0.06 1.93 8.12 -2.39 -0.02 1.91 16
46 H 0.11 3.29 7.98 -2.38 -0.02 3.27 16
47 H 0.40 19.31 7.90 -92.71 -0.73 18.58 16
48 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16
49 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16
50 H 0.09 1.60 8.01 -2.39 -0.02 1.58 16
51 H 0.10 0.92 6.87 -2.39 -0.02 0.90 16
52 H 0.07 1.37 6.21 -2.39 -0.01 1.35 16
Total: -1.00 -74.57 407.62 -0.13 -74.70
By element:
Atomic # 1 Polarization: 36.00 SS G_CDS: -0.47 Total: 35.53 kcal
Atomic # 6 Polarization: 4.18 SS G_CDS: 5.89 Total: 10.07 kcal
Atomic # 7 Polarization: -106.70 SS G_CDS: -7.48 Total: -114.17 kcal
Atomic # 8 Polarization: -51.35 SS G_CDS: -0.09 Total: -51.44 kcal
Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal
Total: -74.57 -0.13 -74.70 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001701006638.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.403 kcal
(2) G-P(sol) polarization free energy of solvation -74.572 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.975 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.126 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.698 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.101 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.66 seconds