Wall clock time and date at job start Tue Mar 31 2020 22:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08988 * 109.47216 * 2 1 4 4 N 1.46505 * 109.46944 * 120.00114 * 2 1 3 5 5 C 1.34775 * 119.99514 * 274.99758 * 4 2 1 6 6 O 1.21283 * 120.00330 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00080 * 180.02562 * 5 4 2 8 8 H 1.09002 * 115.54947 * 325.67432 * 7 5 4 9 9 C 1.53002 * 117.50056 * 111.37530 * 7 5 4 10 10 C 1.52994 * 59.99864 * 107.49369 * 9 7 5 11 11 H 1.08999 * 117.52011 * 252.51956 * 10 9 7 12 12 C 1.52998 * 117.49742 * 107.49277 * 10 9 7 13 13 C 1.52999 * 109.47132 * 239.99497 * 2 1 3 14 14 C 1.53121 * 109.52109 * 64.99884 * 13 2 1 15 15 C 1.53038 * 109.28001 * 182.44158 * 14 13 2 16 16 N 1.46842 * 109.51484 * 59.18117 * 15 14 13 17 17 C 1.46900 * 110.99858 * 174.15405 * 16 15 14 18 18 C 1.50697 * 109.47347 * 293.64624 * 17 16 15 19 19 O 1.21294 * 120.00290 * 353.78831 * 18 17 16 20 20 N 1.34776 * 119.99825 * 173.78135 * 18 17 16 21 21 C 1.37098 * 120.00081 * 180.02562 * 20 18 17 22 22 H 1.08006 * 119.99920 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00384 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99989 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00422 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47372 * 89.99518 * 25 23 21 27 27 H 1.48497 * 109.47185 * 210.00167 * 25 23 21 28 28 H 1.48506 * 109.46689 * 329.99677 * 25 23 21 29 29 C 1.46848 * 111.20327 * 298.24818 * 16 15 14 30 30 C 1.53033 * 109.51325 * 61.75459 * 29 16 15 31 31 H 1.09005 * 109.47201 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46951 * 299.99898 * 1 2 3 33 33 H 1.08993 * 109.47088 * 60.00300 * 1 2 3 34 34 H 0.96997 * 120.00292 * 94.99836 * 4 2 1 35 35 H 1.08997 * 117.50076 * 214.98445 * 9 7 5 36 36 H 1.09000 * 117.49736 * 0.02562 * 9 7 5 37 37 H 1.09000 * 109.47450 * 351.37511 * 12 10 9 38 38 H 1.09001 * 109.47304 * 111.37607 * 12 10 9 39 39 H 1.09004 * 109.47347 * 231.37155 * 12 10 9 40 40 H 1.08995 * 109.57928 * 185.16205 * 13 2 1 41 41 H 1.09001 * 109.50089 * 62.50341 * 14 13 2 42 42 H 1.08994 * 109.50499 * 302.38225 * 14 13 2 43 43 H 1.08999 * 109.46159 * 179.19893 * 15 14 13 44 44 H 1.09001 * 109.45754 * 299.17727 * 15 14 13 45 45 H 1.08997 * 109.47209 * 53.65312 * 17 16 15 46 46 H 1.09005 * 109.46892 * 173.64639 * 17 16 15 47 47 H 0.97000 * 120.00359 * 0.02562 * 20 18 17 48 48 H 0.97001 * 120.00456 * 180.02562 * 24 23 21 49 49 H 1.08995 * 109.46497 * 301.73722 * 29 16 15 50 50 H 1.09001 * 109.45270 * 181.76161 * 29 16 15 51 51 H 1.09004 * 109.49772 * 180.87698 * 30 29 16 52 52 H 1.08997 * 109.53750 * 60.77824 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8590 1.1587 2.4114 7 6 2.6498 -0.7284 3.5875 8 1 2.3528 -1.7729 3.6818 9 6 4.0316 -0.3362 4.1146 10 6 2.7738 0.0897 4.8744 11 1 2.4913 1.1415 4.8313 12 6 2.4719 -0.6210 6.1952 13 6 2.0400 -0.7214 -1.2492 14 6 1.6355 0.0684 -2.4971 15 6 2.0950 -0.6886 -3.7452 16 7 1.4779 -2.0209 -3.7657 17 6 1.7858 -2.7244 -5.0180 18 6 1.1247 -2.0125 -6.1699 19 8 0.3717 -1.0854 -5.9582 20 7 1.3702 -2.4057 -7.4355 21 6 0.7691 -1.7577 -8.4835 22 1 0.0992 -0.9317 -8.2950 23 6 1.0218 -2.1634 -9.7882 24 7 1.8373 -3.1680 -10.0176 25 14 0.2034 -1.2799 -11.2162 26 1 1.0653 -0.1560 -11.6623 27 1 0.0084 -2.2307 -12.3401 28 1 -1.1143 -0.7509 -10.7811 29 6 1.8896 -2.8150 -2.6011 30 6 1.4239 -2.1214 -1.3190 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 2.2490 -1.6318 1.1527 35 1 4.6440 -1.1227 4.5556 36 1 4.5768 0.4359 3.5716 37 1 3.1556 -1.4606 6.3207 38 1 2.5996 0.0782 7.0216 39 1 1.4452 -0.9870 6.1845 40 1 3.1260 -0.8031 -1.2059 41 1 2.1059 1.0514 -2.4739 42 1 0.5519 0.1833 -2.5196 43 1 1.7960 -0.1360 -4.6358 44 1 3.1800 -0.7913 -3.7286 45 1 2.8649 -2.7388 -5.1708 46 1 1.4134 -3.7473 -4.9611 47 1 1.9721 -3.1472 -7.6048 48 1 2.0140 -3.4511 -10.9284 49 1 2.9756 -2.9076 -2.5902 50 1 1.4412 -3.8067 -2.6611 51 1 1.7432 -2.7030 -0.4541 52 1 0.3369 -2.0409 -1.3223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701006638.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:17 Heat of formation + Delta-G solvation = -81.100900 kcal Electronic energy + Delta-G solvation = -29283.665125 eV Core-core repulsion = 25282.216208 eV Total energy + Delta-G solvation = -4001.448917 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -41.37227 -40.60093 -39.54286 -37.92432 -36.81561 -35.85916 -34.04035 -33.22550 -31.75261 -31.14908 -29.48289 -28.58464 -26.66866 -25.73380 -24.56982 -24.01007 -22.28609 -21.66838 -21.00273 -20.92772 -20.06215 -19.85552 -18.48189 -17.74316 -17.14475 -16.76774 -16.48082 -16.29219 -16.13172 -15.89466 -15.63852 -15.41844 -15.25479 -15.02413 -14.82229 -14.35074 -14.20300 -13.99413 -13.89453 -13.69237 -13.57715 -13.46791 -13.14805 -12.93683 -12.86164 -12.83706 -12.68464 -12.43970 -12.40197 -12.30871 -12.12127 -11.84967 -11.68545 -11.52517 -11.34973 -11.27796 -11.12692 -11.03460 -10.74246 -10.25625 -10.08784 -9.97806 -9.12657 -8.45481 -5.93789 1.37860 1.41475 1.49722 1.54067 2.08376 2.13138 2.29207 2.81592 2.87307 3.21622 3.41474 3.61673 3.71480 3.78701 3.80538 3.87992 3.91652 4.19630 4.23355 4.26289 4.33372 4.36681 4.42317 4.43656 4.51513 4.53170 4.59332 4.63939 4.74300 4.77273 4.82054 4.88167 4.91761 4.95560 4.96972 5.00687 5.07177 5.08955 5.21495 5.22870 5.23702 5.28511 5.41852 5.42597 5.51091 5.57643 5.93657 6.13862 6.32919 6.58467 6.62996 7.15033 7.27646 7.59183 8.15608 8.71946 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.037496 B = 0.001748 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.567306 B =16014.141160 C =16346.451085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.156 3.844 3 H 0.065 0.935 4 N -0.706 5.706 5 C 0.536 3.464 6 O -0.590 6.590 7 C -0.193 4.193 8 H 0.151 0.849 9 C -0.137 4.137 10 C -0.133 4.133 11 H 0.089 0.911 12 C -0.119 4.119 13 C -0.081 4.081 14 C -0.102 4.102 15 C 0.060 3.940 16 N -0.533 5.533 17 C 0.058 3.942 18 C 0.441 3.559 19 O -0.614 6.614 20 N -0.576 5.576 21 C -0.332 4.332 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.921 5.921 25 Si 0.991 3.009 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.274 1.274 29 C 0.054 3.946 30 C -0.107 4.107 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.063 0.937 34 H 0.415 0.585 35 H 0.132 0.868 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.051 0.949 44 H 0.032 0.968 45 H 0.063 0.937 46 H 0.111 0.889 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.043 0.957 50 H 0.086 0.914 51 H 0.096 0.904 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.524 -2.989 28.757 29.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.051 3.949 3 H 0.083 0.917 4 N -0.358 5.358 5 C 0.324 3.676 6 O -0.471 6.471 7 C -0.214 4.214 8 H 0.169 0.831 9 C -0.175 4.175 10 C -0.152 4.152 11 H 0.107 0.893 12 C -0.176 4.176 13 C -0.100 4.100 14 C -0.140 4.140 15 C -0.068 4.068 16 N -0.258 5.258 17 C -0.073 4.073 18 C 0.228 3.772 19 O -0.500 6.500 20 N -0.214 5.214 21 C -0.462 4.462 22 H 0.095 0.905 23 C -0.212 4.212 24 N -0.562 5.562 25 Si 0.815 3.185 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.199 1.199 29 C -0.073 4.073 30 C -0.145 4.145 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.253 0.747 35 H 0.150 0.850 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.051 0.949 45 H 0.081 0.919 46 H 0.129 0.871 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.061 0.939 50 H 0.105 0.895 51 H 0.115 0.885 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.370 -1.588 28.771 29.311 hybrid contribution 0.672 -0.136 -1.579 1.722 sum 6.042 -1.725 27.191 27.908 Atomic orbital electron populations 1.22215 0.95262 1.02956 1.01452 1.20763 0.94121 0.96256 0.83748 0.91668 1.45936 1.66401 1.14746 1.08689 1.20262 0.76252 0.86268 0.84801 1.90683 1.52313 1.18326 1.85736 1.22393 1.04313 1.01874 0.92793 0.83109 1.23182 0.89054 1.03537 1.01687 1.22389 1.01624 0.99239 0.91981 0.89268 1.21392 1.02258 1.00357 0.93576 1.21352 1.00675 0.95679 0.92306 1.21534 1.01772 0.98028 0.92661 1.22015 0.95388 0.90302 0.99063 1.61465 1.60346 1.02937 1.01090 1.21717 0.98632 0.98453 0.88480 1.20852 0.85461 0.86528 0.84361 1.90482 1.41391 1.33059 1.85026 1.41950 1.42635 1.32109 1.04706 1.19644 1.25657 1.14977 0.85884 0.90459 1.25995 0.97429 0.97251 1.00525 1.69669 1.36323 1.27384 1.22814 0.84954 0.78373 0.77962 0.77205 1.19739 1.19503 1.19906 1.22230 0.98616 0.97118 0.89366 1.21723 1.01615 0.94427 0.96729 0.90681 0.93951 0.91802 0.74735 0.85043 0.89601 0.90641 0.91405 0.91890 0.89907 0.91292 0.91813 0.93020 0.94949 0.91901 0.87091 0.77093 0.91370 0.93869 0.89530 0.88521 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 8.75 71.98 0.63 -2.69 16 2 C 0.16 3.00 2.36 44.99 0.11 3.11 16 3 H 0.07 1.58 7.58 -2.39 -0.02 1.56 16 4 N -0.71 -10.74 5.01 -442.54 -2.22 -12.96 16 5 C 0.54 10.52 7.58 87.66 0.66 11.19 16 6 O -0.59 -17.27 15.92 -3.04 -0.05 -17.32 16 7 C -0.19 -2.38 5.91 -11.54 -0.07 -2.45 16 8 H 0.15 0.98 8.14 -2.39 -0.02 0.97 16 9 C -0.14 -1.43 9.88 30.59 0.30 -1.13 16 10 C -0.13 -1.76 5.92 -10.80 -0.06 -1.82 16 11 H 0.09 1.68 7.67 -2.39 -0.02 1.66 16 12 C -0.12 -0.96 10.19 71.98 0.73 -0.22 16 13 C -0.08 -1.49 2.19 -10.71 -0.02 -1.52 16 14 C -0.10 -2.60 5.19 30.65 0.16 -2.44 16 15 C 0.06 1.90 5.12 86.33 0.44 2.35 16 16 N -0.53 -16.48 4.35 -900.95 -3.92 -20.40 16 17 C 0.06 1.99 5.45 85.56 0.47 2.46 16 18 C 0.44 21.01 7.31 87.66 0.64 21.65 16 19 O -0.61 -34.07 14.28 -3.07 -0.04 -34.12 16 20 N -0.58 -29.68 5.29 -306.98 -1.62 -31.31 16 21 C -0.33 -18.99 9.68 84.04 0.81 -18.17 16 22 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 23 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 24 N -0.92 -49.79 13.05 21.66 0.28 -49.51 16 25 Si 0.99 43.28 29.55 68.60 2.03 45.31 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 29 C 0.05 1.11 5.46 86.32 0.47 1.58 16 30 C -0.11 -1.76 4.80 30.65 0.15 -1.61 16 31 H 0.07 1.35 6.29 -2.38 -0.02 1.34 16 32 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.06 1.43 6.52 -2.39 -0.02 1.42 16 34 H 0.41 3.66 7.24 -92.71 -0.67 2.99 16 35 H 0.13 0.66 8.05 -2.39 -0.02 0.65 16 36 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.07 0.36 7.90 -2.39 -0.02 0.34 16 38 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 40 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.06 1.84 6.47 -2.39 -0.02 1.83 16 43 H 0.05 2.12 6.05 -2.39 -0.01 2.10 16 44 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.06 1.93 8.12 -2.39 -0.02 1.91 16 46 H 0.11 3.29 7.98 -2.38 -0.02 3.27 16 47 H 0.40 19.31 7.90 -92.71 -0.73 18.58 16 48 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 49 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.09 1.60 8.01 -2.39 -0.02 1.58 16 51 H 0.10 0.92 6.87 -2.39 -0.02 0.90 16 52 H 0.07 1.37 6.21 -2.39 -0.01 1.35 16 Total: -1.00 -74.57 407.62 -0.13 -74.70 By element: Atomic # 1 Polarization: 36.00 SS G_CDS: -0.47 Total: 35.53 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 5.89 Total: 10.07 kcal Atomic # 7 Polarization: -106.70 SS G_CDS: -7.48 Total: -114.17 kcal Atomic # 8 Polarization: -51.35 SS G_CDS: -0.09 Total: -51.44 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -74.57 -0.13 -74.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701006638.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.403 kcal (2) G-P(sol) polarization free energy of solvation -74.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds