Wall clock time and date at job start Tue Mar 31 2020 20:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46551 * 2 1 4 4 C 1.52997 * 109.47322 * 240.00211 * 2 1 3 5 5 C 1.50700 * 109.47222 * 64.99716 * 4 2 1 6 6 N 1.34773 * 120.00404 * 180.02562 * 5 4 2 7 7 O 1.21284 * 119.99910 * 359.97438 * 5 4 2 8 8 C 1.50692 * 109.47171 * 119.99820 * 2 1 3 9 9 O 1.21290 * 120.00127 * 119.99756 * 8 2 1 10 10 N 1.34779 * 120.00344 * 300.00303 * 8 2 1 11 11 C 1.47566 * 125.62973 * 0.02789 * 10 8 2 12 12 C 1.54142 * 104.78110 * 203.06509 * 11 10 8 13 13 C 1.54371 * 102.47213 * 323.90787 * 12 11 10 14 14 C 1.47080 * 125.63174 * 179.71126 * 10 8 2 15 15 H 1.09001 * 109.87713 * 59.83872 * 14 10 8 16 16 C 1.53007 * 109.88149 * 298.69200 * 14 10 8 17 17 C 1.52095 * 110.65112 * 206.01282 * 12 11 10 18 18 C 1.53346 * 109.44708 * 295.62319 * 17 12 11 19 19 N 1.46936 * 108.68427 * 306.70225 * 18 17 12 20 20 C 1.36935 * 120.55127 * 234.36813 * 19 18 17 21 21 H 1.08003 * 120.00287 * 27.95217 * 20 19 18 22 22 C 1.38814 * 120.00059 * 207.95384 * 20 19 18 23 23 N 1.31619 * 119.99504 * 17.47574 * 22 20 19 24 24 Si 1.86794 * 120.00087 * 197.47576 * 22 20 19 25 25 H 1.48500 * 109.47254 * 359.97438 * 24 22 20 26 26 H 1.48507 * 109.47044 * 120.00145 * 24 22 20 27 27 H 1.48493 * 109.47347 * 239.99430 * 24 22 20 28 28 C 1.46935 * 118.89351 * 54.34345 * 19 18 17 29 29 C 1.52106 * 110.64931 * 81.78642 * 12 11 10 30 30 H 1.09001 * 109.47251 * 59.99894 * 1 2 3 31 31 H 1.09007 * 109.46882 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47157 * 299.99462 * 1 2 3 33 33 H 1.08993 * 109.47466 * 184.99833 * 4 2 1 34 34 H 1.09002 * 109.47383 * 305.00052 * 4 2 1 35 35 H 0.97007 * 119.99879 * 359.97438 * 6 5 4 36 36 H 0.96992 * 120.00603 * 179.97438 * 6 5 4 37 37 H 1.09007 * 110.37263 * 321.89001 * 11 10 8 38 38 H 1.08995 * 110.38172 * 84.23421 * 11 10 8 39 39 H 1.08996 * 110.73015 * 152.98754 * 13 12 11 40 40 H 1.08997 * 110.73340 * 276.11610 * 13 12 11 41 41 H 1.09000 * 109.47144 * 61.45096 * 16 14 10 42 42 H 1.08997 * 109.47348 * 181.45208 * 16 14 10 43 43 H 1.08999 * 109.46749 * 301.45311 * 16 14 10 44 44 H 1.09005 * 109.47614 * 55.61480 * 17 12 11 45 45 H 1.09004 * 109.47927 * 175.62840 * 17 12 11 46 46 H 1.08999 * 109.60255 * 186.94883 * 18 17 12 47 47 H 1.08996 * 109.73462 * 66.54006 * 18 17 12 48 48 H 0.97003 * 119.99432 * 180.02562 * 23 22 20 49 49 H 1.09004 * 109.60034 * 185.88897 * 28 19 18 50 50 H 1.09002 * 109.59795 * 65.41176 * 28 19 18 51 51 H 1.08996 * 109.47288 * 184.36816 * 29 12 11 52 52 H 1.09002 * 109.47879 * 304.37856 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0571 -2.4766 6 7 1.9845 -0.3918 -3.7002 7 8 1.0109 1.0870 -2.3633 8 6 2.0324 -0.7103 1.2304 9 8 2.7296 -1.6965 1.1192 10 7 1.7068 -0.2499 2.4546 11 6 0.8696 0.9328 2.7335 12 6 1.2731 1.3740 4.1543 13 6 1.5303 0.0261 4.8614 14 6 2.1217 -0.8472 3.7330 15 1 3.2095 -0.8556 3.8023 16 6 1.5797 -2.2740 3.8410 17 6 0.1327 2.1217 4.8279 18 6 -0.1470 3.4217 4.0642 19 7 1.1092 4.1736 3.9389 20 6 1.1887 5.4722 4.3660 21 1 0.5505 5.8177 5.1659 22 6 2.0894 6.3447 3.7707 23 7 2.6126 6.0520 2.5990 24 14 2.5589 7.9341 4.6326 25 1 1.8369 8.0272 5.9269 26 1 4.0232 7.9494 4.8796 27 1 2.1895 9.0895 3.7760 28 6 2.2788 3.5086 3.3483 29 6 2.5444 2.2082 4.1162 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 3.1263 -0.7994 -1.2056 34 1 1.6055 -1.7198 -1.2952 35 1 2.4885 -1.2157 -3.7908 36 1 1.7276 0.1089 -4.4901 37 1 1.0812 1.7253 2.0156 38 1 -0.1867 0.6656 2.7047 39 1 2.2484 0.1468 5.6725 40 1 0.5980 -0.3986 5.2334 41 1 1.9912 -2.8810 3.0346 42 1 1.8692 -2.7009 4.8012 43 1 0.4926 -2.2563 3.7641 44 1 -0.7619 1.4989 4.8252 45 1 0.4090 2.3563 5.8559 46 1 -0.8768 4.0178 4.6120 47 1 -0.5348 3.1897 3.0724 48 1 3.2423 6.6616 2.1832 49 1 3.1479 4.1621 3.4240 50 1 2.0797 3.2808 2.3011 51 1 2.8549 2.4441 5.1340 52 1 3.3333 1.6459 3.6167 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707122973.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:26 Heat of formation + Delta-G solvation = -86.331928 kcal Electronic energy + Delta-G solvation = -31778.277412 eV Core-core repulsion = 27776.601661 eV Total energy + Delta-G solvation = -4001.675751 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -41.94495 -40.71667 -39.66562 -37.53295 -35.38081 -34.79434 -34.65349 -32.73981 -32.37123 -31.59763 -28.86618 -28.68957 -27.03748 -26.05926 -25.10580 -23.92036 -23.00146 -22.16874 -21.08340 -20.10916 -19.52506 -18.68118 -18.44196 -17.93867 -17.40980 -16.85771 -16.70236 -16.61357 -16.11430 -15.71150 -15.39057 -15.25218 -15.00764 -14.93790 -14.72317 -14.55941 -14.19861 -13.98994 -13.83721 -13.63797 -13.44568 -13.15312 -13.06721 -12.97105 -12.92100 -12.81156 -12.58901 -12.29894 -12.26361 -12.20310 -12.11335 -11.94196 -11.81347 -11.76683 -11.41144 -11.06973 -11.01195 -10.91358 -10.71712 -10.55816 -10.48397 -9.61758 -8.62636 -7.84718 -5.29268 1.45542 1.47811 1.57908 1.58886 1.63479 1.93420 2.52700 2.65908 3.28854 3.40385 3.53185 3.61268 3.73743 3.84974 3.90091 3.96660 4.16533 4.16869 4.25556 4.33501 4.37459 4.49798 4.57125 4.58378 4.62797 4.66198 4.73762 4.75518 4.79345 4.85696 4.92404 4.95381 4.99529 5.03535 5.07159 5.14574 5.24931 5.30544 5.31749 5.36776 5.40922 5.44726 5.49672 5.56986 5.68069 5.80663 5.92779 6.41842 6.45335 6.52409 7.12184 7.17952 7.36798 7.91171 8.41446 9.20987 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010481 B = 0.003945 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.846007 B = 7096.591163 C = 8939.022184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.080 0.920 4 C -0.115 4.115 5 C 0.515 3.485 6 N -0.836 5.836 7 O -0.584 6.584 8 C 0.536 3.464 9 O -0.571 6.571 10 N -0.606 5.606 11 C 0.113 3.887 12 C -0.056 4.056 13 C -0.107 4.107 14 C 0.130 3.870 15 H 0.060 0.940 16 C -0.150 4.150 17 C -0.104 4.104 18 C 0.137 3.863 19 N -0.608 5.608 20 C -0.257 4.257 21 H 0.068 0.932 22 C -0.052 4.052 23 N -0.936 5.936 24 Si 0.962 3.038 25 H -0.264 1.264 26 H -0.293 1.293 27 H -0.295 1.295 28 C 0.182 3.818 29 C -0.110 4.110 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.119 0.881 35 H 0.418 0.582 36 H 0.407 0.593 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.047 0.953 42 H 0.083 0.917 43 H 0.063 0.937 44 H 0.091 0.909 45 H 0.064 0.936 46 H 0.053 0.947 47 H 0.015 0.985 48 H 0.247 0.753 49 H 0.045 0.955 50 H -0.006 1.006 51 H 0.056 0.944 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.433 -20.073 -3.392 20.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 H 0.098 0.902 4 C -0.155 4.155 5 C 0.301 3.699 6 N -0.401 5.401 7 O -0.464 6.464 8 C 0.325 3.675 9 O -0.452 6.452 10 N -0.338 5.338 11 C -0.009 4.009 12 C -0.057 4.057 13 C -0.145 4.145 14 C 0.028 3.972 15 H 0.078 0.922 16 C -0.207 4.207 17 C -0.143 4.143 18 C 0.012 3.988 19 N -0.331 5.331 20 C -0.388 4.388 21 H 0.086 0.914 22 C -0.247 4.247 23 N -0.583 5.583 24 Si 0.790 3.210 25 H -0.188 1.188 26 H -0.220 1.220 27 H -0.222 1.222 28 C 0.056 3.944 29 C -0.149 4.149 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.124 0.876 34 H 0.137 0.863 35 H 0.250 0.750 36 H 0.239 0.761 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.119 0.881 41 H 0.066 0.934 42 H 0.102 0.898 43 H 0.082 0.918 44 H 0.109 0.891 45 H 0.083 0.917 46 H 0.072 0.928 47 H 0.033 0.967 48 H 0.056 0.944 49 H 0.064 0.936 50 H 0.011 0.989 51 H 0.074 0.926 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.348 -19.916 -3.341 20.470 hybrid contribution 0.870 1.373 -0.536 1.712 sum -2.479 -18.542 -3.877 19.105 Atomic orbital electron populations 1.21934 0.91715 1.02778 1.03890 1.20917 0.99037 0.99834 0.91598 0.90164 1.21399 1.04077 1.00262 0.89811 1.20802 0.77988 0.84748 0.86406 1.43682 1.59211 1.29934 1.07241 1.90759 1.41824 1.26451 1.87357 1.20379 0.79317 0.83828 0.83958 1.90624 1.39902 1.27845 1.86779 1.48636 1.50839 1.28988 1.05335 1.22493 0.94905 0.86379 0.97147 1.20928 0.95862 0.94856 0.94066 1.22753 1.02812 0.92604 0.96284 1.21700 0.98662 0.94187 0.82674 0.92214 1.22033 1.01311 0.94679 1.02725 1.21723 0.97301 0.96078 0.99170 1.21143 0.87928 0.92768 0.96931 1.44295 1.06978 1.09704 1.72159 1.19566 1.20155 0.87277 1.11753 0.91415 1.25750 1.02313 1.00728 0.95895 1.70211 1.33965 1.38464 1.15613 0.85288 0.77449 0.79758 0.78472 1.18812 1.21977 1.22231 1.20535 0.90513 0.91190 0.92146 1.21763 0.96371 0.96362 1.00373 0.90929 0.91294 0.91717 0.87555 0.86274 0.75042 0.76124 0.92305 0.89430 0.89278 0.88065 0.93351 0.89817 0.91840 0.89056 0.91678 0.92813 0.96662 0.94403 0.93620 0.98852 0.92550 0.93296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 8.75 71.98 0.63 -3.04 16 2 C -0.09 -2.52 1.73 -11.54 -0.02 -2.54 16 3 H 0.08 2.66 7.67 -2.39 -0.02 2.64 16 4 C -0.12 -2.48 4.52 29.85 0.13 -2.34 16 5 C 0.51 11.77 7.82 87.66 0.69 12.46 16 6 N -0.84 -11.15 8.87 -173.53 -1.54 -12.69 16 7 O -0.58 -19.18 14.80 -3.04 -0.05 -19.23 16 8 C 0.54 15.74 7.00 87.65 0.61 16.36 16 9 O -0.57 -18.56 14.94 -3.06 -0.05 -18.61 16 10 N -0.61 -16.80 3.05 -788.79 -2.41 -19.21 16 11 C 0.11 3.24 3.12 86.56 0.27 3.51 16 12 C -0.06 -1.61 0.54 -51.92 -0.03 -1.63 16 13 C -0.11 -2.29 5.42 31.56 0.17 -2.12 16 14 C 0.13 3.15 3.10 45.38 0.14 3.29 16 15 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 16 C -0.15 -3.04 9.10 71.98 0.66 -2.38 16 17 C -0.10 -2.96 4.83 30.41 0.15 -2.81 16 18 C 0.14 5.31 6.25 86.41 0.54 5.85 16 19 N -0.61 -29.79 2.98 -698.47 -2.08 -31.87 16 20 C -0.26 -14.05 9.57 84.03 0.80 -13.25 16 21 H 0.07 3.59 7.89 -2.91 -0.02 3.57 16 22 C -0.05 -2.92 4.90 84.86 0.42 -2.50 16 23 N -0.94 -56.58 11.20 21.65 0.24 -56.34 16 24 Si 0.96 45.37 29.59 68.60 2.03 47.40 16 25 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 26 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 27 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 28 C 0.18 8.74 5.02 86.41 0.43 9.17 16 29 C -0.11 -4.01 4.83 30.41 0.15 -3.86 16 30 H 0.07 2.04 5.95 -2.39 -0.01 2.03 16 31 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.06 1.64 4.98 -2.39 -0.01 1.63 16 33 H 0.11 2.19 7.95 -2.39 -0.02 2.17 16 34 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.42 2.72 8.83 -92.70 -0.82 1.90 16 36 H 0.41 4.80 8.93 -92.71 -0.83 3.97 16 37 H 0.06 2.09 5.49 -2.38 -0.01 2.07 16 38 H 0.09 2.17 6.84 -2.39 -0.02 2.15 16 39 H 0.09 1.80 8.01 -2.39 -0.02 1.78 16 40 H 0.10 1.71 7.70 -2.39 -0.02 1.69 16 41 H 0.05 1.18 6.87 -2.39 -0.02 1.17 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.09 1.99 8.09 -2.38 -0.02 1.97 16 45 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 46 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 47 H 0.02 0.60 7.64 -2.39 -0.02 0.59 16 48 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 49 H 0.05 2.56 6.01 -2.38 -0.01 2.54 16 50 H -0.01 -0.34 6.58 -2.39 -0.02 -0.35 16 51 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 52 H 0.05 1.76 7.84 -2.39 -0.02 1.74 16 Total: -1.00 -74.47 389.78 1.18 -73.29 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: -0.71 Total: 23.10 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 5.74 Total: 14.16 kcal Atomic # 7 Polarization: -114.32 SS G_CDS: -5.79 Total: -120.11 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -0.09 Total: -37.84 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -74.47 1.18 -73.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707122973.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.046 kcal (2) G-P(sol) polarization free energy of solvation -74.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds