Wall clock time and date at job start Tue Mar 31 2020 20:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47164 * 2 1 4 4 C 1.52991 * 109.47584 * 120.00611 * 2 1 3 5 5 C 1.50698 * 109.47286 * 294.99531 * 4 2 1 6 6 N 1.34779 * 120.00338 * 179.97438 * 5 4 2 7 7 O 1.21286 * 119.99797 * 0.02562 * 5 4 2 8 8 C 1.50703 * 109.46628 * 240.00868 * 2 1 3 9 9 O 1.21283 * 119.99835 * 272.76580 * 8 2 1 10 10 N 1.34775 * 120.00384 * 93.04427 * 8 2 1 11 11 C 1.47565 * 125.62786 * 4.84076 * 10 8 2 12 12 C 1.54144 * 104.78023 * 203.29515 * 11 10 8 13 13 C 1.54368 * 102.47388 * 323.91310 * 12 11 10 14 14 C 1.47089 * 125.63118 * 184.53527 * 10 8 2 15 15 H 1.08997 * 109.87563 * 59.60284 * 14 10 8 16 16 C 1.53001 * 109.87471 * 298.45868 * 14 10 8 17 17 C 1.52103 * 110.65303 * 206.01745 * 12 11 10 18 18 C 1.53343 * 109.44408 * 295.62022 * 17 12 11 19 19 N 1.46929 * 108.69054 * 306.70386 * 18 17 12 20 20 C 1.36935 * 120.55230 * 234.36833 * 19 18 17 21 21 H 1.07997 * 120.00048 * 148.76657 * 20 19 18 22 22 C 1.38809 * 119.99724 * 328.76178 * 20 19 18 23 23 N 1.31620 * 119.99533 * 161.25707 * 22 20 19 24 24 Si 1.86797 * 120.00453 * 341.25822 * 22 20 19 25 25 H 1.48500 * 109.46958 * 92.73776 * 24 22 20 26 26 H 1.48499 * 109.47307 * 212.73679 * 24 22 20 27 27 H 1.48503 * 109.47030 * 332.73982 * 24 22 20 28 28 C 1.46938 * 118.89571 * 54.34265 * 19 18 17 29 29 C 1.52112 * 110.64900 * 81.78802 * 12 11 10 30 30 H 1.08989 * 109.47897 * 66.48477 * 1 2 3 31 31 H 1.09003 * 109.47314 * 186.49389 * 1 2 3 32 32 H 1.09007 * 109.46656 * 306.48167 * 1 2 3 33 33 H 1.09001 * 109.47182 * 54.99662 * 4 2 1 34 34 H 1.08997 * 109.47282 * 174.99549 * 4 2 1 35 35 H 0.97000 * 119.99512 * 0.02562 * 6 5 4 36 36 H 0.96996 * 119.99990 * 180.02562 * 6 5 4 37 37 H 1.09001 * 110.37918 * 322.11859 * 11 10 8 38 38 H 1.08993 * 110.37834 * 84.46986 * 11 10 8 39 39 H 1.09001 * 110.73092 * 152.99061 * 13 12 11 40 40 H 1.09000 * 110.73260 * 276.29471 * 13 12 11 41 41 H 1.08996 * 109.47312 * 61.45367 * 16 14 10 42 42 H 1.08996 * 109.46952 * 181.45297 * 16 14 10 43 43 H 1.08998 * 109.47090 * 301.45217 * 16 14 10 44 44 H 1.09002 * 109.47492 * 55.61425 * 17 12 11 45 45 H 1.09000 * 109.47591 * 175.62737 * 17 12 11 46 46 H 1.08998 * 109.60203 * 186.94019 * 18 17 12 47 47 H 1.09003 * 109.73114 * 66.54209 * 18 17 12 48 48 H 0.97008 * 120.00018 * 179.97438 * 23 22 20 49 49 H 1.08999 * 109.60454 * 185.89203 * 28 19 18 50 50 H 1.09011 * 109.60012 * 65.40849 * 28 19 18 51 51 H 1.09001 * 109.47303 * 184.36704 * 29 12 11 52 52 H 1.08994 * 109.47720 * 304.38357 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6416 0.0568 2.4765 6 7 1.9848 -0.3922 3.7001 7 8 1.0112 1.0868 2.3634 8 6 2.0322 -0.7103 -1.2306 9 8 2.1865 -1.9131 -1.2160 10 7 2.3153 -0.0081 -2.3457 11 6 2.2761 1.4618 -2.4690 12 6 2.0793 1.7250 -3.9750 13 6 2.9097 0.5960 -4.6221 14 6 2.7203 -0.5802 -3.6388 15 1 1.9425 -1.2484 -4.0084 16 6 4.0354 -1.3459 -3.4798 17 6 2.6380 3.0866 -4.3592 18 6 1.8388 4.1853 -3.6482 19 7 0.4111 3.9892 -3.9344 20 6 -0.3388 5.0056 -4.4633 21 1 -1.1679 4.7807 -5.1178 22 6 -0.0333 6.3248 -4.1582 23 7 -0.4840 7.2980 -4.9212 24 14 1.0173 6.7190 -2.6649 25 1 2.4431 6.8042 -3.0713 26 1 0.5889 8.0181 -2.0871 27 1 0.8554 5.6479 -1.6490 28 6 -0.1985 2.6842 -3.6441 29 6 0.6123 1.5941 -4.3552 30 1 -0.3634 0.4100 -0.9422 31 1 -0.3634 -1.0211 0.1162 32 1 -0.3633 0.6111 0.8264 33 1 1.6055 -1.7199 1.2949 34 1 3.1264 -0.7996 1.2053 35 1 2.4887 -1.2161 3.7905 36 1 1.7280 0.1085 4.4901 37 1 1.4397 1.8683 -1.9003 38 1 3.2154 1.8965 -2.1273 39 1 2.5176 0.3450 -5.6077 40 1 3.9610 0.8770 -4.6839 41 1 3.8953 -2.1663 -2.7759 42 1 4.3425 -1.7450 -4.4464 43 1 4.8050 -0.6719 -3.1038 44 1 3.6846 3.1473 -4.0606 45 1 2.5594 3.2204 -5.4381 46 1 2.1544 5.1622 -4.0145 47 1 2.0077 4.1260 -2.5729 48 1 -0.2708 8.2200 -4.7078 49 1 -1.2260 2.6715 -4.0077 50 1 -0.1864 2.5060 -2.5687 51 1 0.5051 1.7069 -5.4341 52 1 0.2450 0.6131 -4.0541 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707122993.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:43 Heat of formation + Delta-G solvation = -62.048830 kcal Electronic energy + Delta-G solvation = -31830.753120 eV Core-core repulsion = 27830.130362 eV Total energy + Delta-G solvation = -4000.622757 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -40.89398 -39.84155 -38.60945 -36.30147 -34.33619 -33.94678 -33.12911 -31.71864 -31.14578 -30.47663 -28.08395 -27.46596 -25.93477 -24.61187 -23.87157 -22.94709 -21.63159 -21.04210 -20.24640 -19.07724 -18.22767 -17.83729 -17.25980 -16.77821 -16.37538 -16.09277 -15.54099 -15.26564 -14.76203 -14.50925 -14.37865 -14.11788 -13.84329 -13.70449 -13.65553 -13.43569 -13.14515 -12.89324 -12.63753 -12.52325 -12.38822 -12.12136 -12.02495 -11.97199 -11.80257 -11.61785 -11.35045 -11.21302 -11.09548 -10.88821 -10.82023 -10.59088 -10.45330 -10.17954 -10.06950 -9.96329 -9.85604 -9.63694 -9.54594 -9.43446 -8.61408 -8.58704 -6.90005 -5.94446 -3.33686 2.39597 2.59673 2.85983 3.32511 3.35682 3.50188 3.53567 4.31263 4.47601 4.54104 4.56404 4.74396 4.76375 4.87597 4.93968 4.99124 5.13909 5.24384 5.28546 5.30796 5.42447 5.44047 5.46674 5.49979 5.58606 5.68839 5.73668 5.82008 5.82540 5.85057 5.91439 5.96018 6.03827 6.05228 6.18070 6.20323 6.23259 6.34377 6.39153 6.45985 6.47431 6.50568 6.65917 6.68382 6.69879 6.94389 7.01125 7.54128 8.00314 8.01212 8.15369 8.35415 8.96231 9.72993 10.12036 11.21726 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010683 B = 0.004233 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.342607 B = 6613.882861 C = 8388.566616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.098 0.902 4 C -0.125 4.125 5 C 0.517 3.483 6 N -0.859 5.859 7 O -0.533 6.533 8 C 0.537 3.463 9 O -0.549 6.549 10 N -0.607 5.607 11 C 0.102 3.898 12 C -0.056 4.056 13 C -0.121 4.121 14 C 0.136 3.864 15 H 0.073 0.927 16 C -0.160 4.160 17 C -0.118 4.118 18 C 0.126 3.874 19 N -0.604 5.604 20 C -0.260 4.260 21 H 0.083 0.917 22 C 0.027 3.973 23 N -0.910 5.910 24 Si 0.881 3.119 25 H -0.288 1.288 26 H -0.303 1.303 27 H -0.268 1.268 28 C 0.147 3.853 29 C -0.119 4.119 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.401 0.599 36 H 0.401 0.599 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.024 0.976 48 H 0.262 0.738 49 H 0.063 0.937 50 H 0.022 0.978 51 H 0.066 0.934 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.425 -18.977 10.515 23.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.116 0.884 4 C -0.165 4.165 5 C 0.302 3.698 6 N -0.423 5.423 7 O -0.409 6.409 8 C 0.326 3.674 9 O -0.427 6.427 10 N -0.340 5.340 11 C -0.021 4.021 12 C -0.057 4.057 13 C -0.159 4.159 14 C 0.033 3.967 15 H 0.091 0.909 16 C -0.218 4.218 17 C -0.158 4.158 18 C 0.000 4.000 19 N -0.327 5.327 20 C -0.389 4.389 21 H 0.101 0.899 22 C -0.172 4.172 23 N -0.553 5.553 24 Si 0.712 3.288 25 H -0.216 1.216 26 H -0.231 1.231 27 H -0.193 1.193 28 C 0.021 3.979 29 C -0.158 4.158 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.124 0.876 34 H 0.113 0.887 35 H 0.229 0.771 36 H 0.231 0.769 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.042 0.958 48 H 0.072 0.928 49 H 0.082 0.918 50 H 0.040 0.960 51 H 0.085 0.915 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.035 -18.829 10.278 23.276 hybrid contribution 0.874 0.237 1.190 1.495 sum 9.910 -18.592 11.468 23.987 Atomic orbital electron populations 1.21833 0.91670 1.02636 1.04111 1.20988 0.98870 1.00690 0.90867 0.88371 1.21496 1.03151 1.00550 0.91328 1.20660 0.78564 0.85396 0.85212 1.43886 1.60453 1.29606 1.08323 1.90771 1.39200 1.24352 1.86608 1.20214 0.76720 0.86987 0.83521 1.90643 1.53905 1.14441 1.83736 1.48651 1.66885 1.07913 1.10595 1.22562 1.02158 0.79266 0.98074 1.20970 0.96533 0.95225 0.92964 1.22813 1.00822 0.94043 0.98254 1.21576 0.96549 0.95340 0.83223 0.90894 1.22132 0.96515 1.00926 1.02276 1.21872 0.98124 0.93809 1.01997 1.21369 0.84886 0.97367 0.96347 1.44306 1.03766 1.10221 1.74456 1.18897 1.13131 0.84527 1.22319 0.89924 1.25358 0.98351 0.95589 0.97940 1.69823 1.48228 0.99565 1.37635 0.86943 0.79382 0.77055 0.85467 1.21598 1.23130 1.19329 1.21001 0.95928 0.84980 0.95945 1.21834 0.93446 0.99028 1.01478 0.91831 0.92496 0.89525 0.87607 0.88659 0.77086 0.76853 0.89474 0.91459 0.90002 0.90598 0.91265 0.91965 0.92735 0.92579 0.91045 0.90993 0.95799 0.92780 0.91812 0.95975 0.91482 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.84 37.16 0.33 -1.47 16 2 C -0.09 -1.12 1.86 -91.77 -0.17 -1.29 16 3 H 0.10 1.27 6.67 -51.93 -0.35 0.92 16 4 C -0.12 -1.19 4.72 -27.89 -0.13 -1.32 16 5 C 0.52 5.25 7.85 -10.99 -0.09 5.16 16 6 N -0.86 -5.22 8.87 31.22 0.28 -4.94 16 7 O -0.53 -7.75 14.81 5.55 0.08 -7.67 16 8 C 0.54 7.23 6.69 -10.98 -0.07 7.16 16 9 O -0.55 -8.45 15.20 5.55 0.08 -8.37 16 10 N -0.61 -7.91 3.06 -163.25 -0.50 -8.41 16 11 C 0.10 1.39 4.29 -2.86 -0.01 1.38 16 12 C -0.06 -0.79 0.54 -154.10 -0.08 -0.87 16 13 C -0.12 -1.40 5.43 -25.24 -0.14 -1.54 16 14 C 0.14 1.63 3.14 -66.84 -0.21 1.42 16 15 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 16 C -0.16 -1.75 9.10 37.16 0.34 -1.42 16 17 C -0.12 -1.90 4.83 -27.01 -0.13 -2.03 16 18 C 0.13 2.59 3.94 -3.63 -0.01 2.58 16 19 N -0.60 -13.77 2.70 -172.12 -0.47 -14.23 16 20 C -0.26 -7.15 10.00 -15.06 -0.15 -7.30 16 21 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 22 C 0.03 0.77 5.23 -17.43 -0.09 0.67 16 23 N -0.91 -27.75 13.97 55.49 0.78 -26.98 16 24 Si 0.88 22.26 24.39 -169.99 -4.15 18.11 16 25 H -0.29 -6.98 6.68 56.52 0.38 -6.60 16 26 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 27 H -0.27 -6.68 6.66 56.52 0.38 -6.30 16 28 C 0.15 2.79 6.20 -3.63 -0.02 2.77 16 29 C -0.12 -1.83 4.83 -27.01 -0.13 -1.96 16 30 H 0.06 0.82 8.14 -51.94 -0.42 0.40 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.17 6.10 -51.93 -0.32 0.85 16 33 H 0.11 0.92 8.02 -51.93 -0.42 0.51 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.40 1.23 8.83 -40.82 -0.36 0.87 16 36 H 0.40 2.15 8.93 -40.82 -0.36 1.78 16 37 H 0.09 1.31 5.38 -51.93 -0.28 1.03 16 38 H 0.07 0.88 7.97 -51.93 -0.41 0.46 16 39 H 0.08 0.89 8.01 -51.93 -0.42 0.47 16 40 H 0.08 0.81 7.69 -51.93 -0.40 0.41 16 41 H 0.07 0.87 6.73 -51.93 -0.35 0.52 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 45 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.07 1.65 4.81 -51.93 -0.25 1.40 16 47 H 0.02 0.49 6.56 -51.93 -0.34 0.15 16 48 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 49 H 0.06 1.24 7.93 -51.93 -0.41 0.82 16 50 H 0.02 0.42 6.58 -51.92 -0.34 0.07 16 51 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 52 H 0.05 0.78 7.85 -51.93 -0.41 0.37 16 LS Contribution 388.59 15.07 5.86 5.86 Total: -1.00 -33.86 388.59 -7.63 -41.50 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -8.82 Total: 3.18 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -0.78 Total: 1.95 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: 0.09 Total: -54.57 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: 0.17 Total: -16.04 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.15 Total: 18.11 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.86 -7.63 -41.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707122993.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.551 kcal (2) G-P(sol) polarization free energy of solvation -33.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds