Wall clock time and date at job start Tue Mar 31 2020 20:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47164 * 2 1 4 4 C 1.52991 * 109.47584 * 120.00611 * 2 1 3 5 5 C 1.50698 * 109.47286 * 294.99531 * 4 2 1 6 6 N 1.34779 * 120.00338 * 179.97438 * 5 4 2 7 7 O 1.21286 * 119.99797 * 0.02562 * 5 4 2 8 8 C 1.50703 * 109.46628 * 240.00868 * 2 1 3 9 9 O 1.21283 * 119.99835 * 272.76580 * 8 2 1 10 10 N 1.34775 * 120.00384 * 93.04427 * 8 2 1 11 11 C 1.47565 * 125.62786 * 4.84076 * 10 8 2 12 12 C 1.54144 * 104.78023 * 203.29515 * 11 10 8 13 13 C 1.54368 * 102.47388 * 323.91310 * 12 11 10 14 14 C 1.47089 * 125.63118 * 184.53527 * 10 8 2 15 15 H 1.08997 * 109.87563 * 59.60284 * 14 10 8 16 16 C 1.53001 * 109.87471 * 298.45868 * 14 10 8 17 17 C 1.52103 * 110.65303 * 206.01745 * 12 11 10 18 18 C 1.53343 * 109.44408 * 295.62022 * 17 12 11 19 19 N 1.46929 * 108.69054 * 306.70386 * 18 17 12 20 20 C 1.36935 * 120.55230 * 234.36833 * 19 18 17 21 21 H 1.07997 * 120.00048 * 148.76657 * 20 19 18 22 22 C 1.38809 * 119.99724 * 328.76178 * 20 19 18 23 23 N 1.31620 * 119.99533 * 161.25707 * 22 20 19 24 24 Si 1.86797 * 120.00453 * 341.25822 * 22 20 19 25 25 H 1.48500 * 109.46958 * 92.73776 * 24 22 20 26 26 H 1.48499 * 109.47307 * 212.73679 * 24 22 20 27 27 H 1.48503 * 109.47030 * 332.73982 * 24 22 20 28 28 C 1.46938 * 118.89571 * 54.34265 * 19 18 17 29 29 C 1.52112 * 110.64900 * 81.78802 * 12 11 10 30 30 H 1.08989 * 109.47897 * 66.48477 * 1 2 3 31 31 H 1.09003 * 109.47314 * 186.49389 * 1 2 3 32 32 H 1.09007 * 109.46656 * 306.48167 * 1 2 3 33 33 H 1.09001 * 109.47182 * 54.99662 * 4 2 1 34 34 H 1.08997 * 109.47282 * 174.99549 * 4 2 1 35 35 H 0.97000 * 119.99512 * 0.02562 * 6 5 4 36 36 H 0.96996 * 119.99990 * 180.02562 * 6 5 4 37 37 H 1.09001 * 110.37918 * 322.11859 * 11 10 8 38 38 H 1.08993 * 110.37834 * 84.46986 * 11 10 8 39 39 H 1.09001 * 110.73092 * 152.99061 * 13 12 11 40 40 H 1.09000 * 110.73260 * 276.29471 * 13 12 11 41 41 H 1.08996 * 109.47312 * 61.45367 * 16 14 10 42 42 H 1.08996 * 109.46952 * 181.45297 * 16 14 10 43 43 H 1.08998 * 109.47090 * 301.45217 * 16 14 10 44 44 H 1.09002 * 109.47492 * 55.61425 * 17 12 11 45 45 H 1.09000 * 109.47591 * 175.62737 * 17 12 11 46 46 H 1.08998 * 109.60203 * 186.94019 * 18 17 12 47 47 H 1.09003 * 109.73114 * 66.54209 * 18 17 12 48 48 H 0.97008 * 120.00018 * 179.97438 * 23 22 20 49 49 H 1.08999 * 109.60454 * 185.89203 * 28 19 18 50 50 H 1.09011 * 109.60012 * 65.40849 * 28 19 18 51 51 H 1.09001 * 109.47303 * 184.36704 * 29 12 11 52 52 H 1.08994 * 109.47720 * 304.38357 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6416 0.0568 2.4765 6 7 1.9848 -0.3922 3.7001 7 8 1.0112 1.0868 2.3634 8 6 2.0322 -0.7103 -1.2306 9 8 2.1865 -1.9131 -1.2160 10 7 2.3153 -0.0081 -2.3457 11 6 2.2761 1.4618 -2.4690 12 6 2.0793 1.7250 -3.9750 13 6 2.9097 0.5960 -4.6221 14 6 2.7203 -0.5802 -3.6388 15 1 1.9425 -1.2484 -4.0084 16 6 4.0354 -1.3459 -3.4798 17 6 2.6380 3.0866 -4.3592 18 6 1.8388 4.1853 -3.6482 19 7 0.4111 3.9892 -3.9344 20 6 -0.3388 5.0056 -4.4633 21 1 -1.1679 4.7807 -5.1178 22 6 -0.0333 6.3248 -4.1582 23 7 -0.4840 7.2980 -4.9212 24 14 1.0173 6.7190 -2.6649 25 1 2.4431 6.8042 -3.0713 26 1 0.5889 8.0181 -2.0871 27 1 0.8554 5.6479 -1.6490 28 6 -0.1985 2.6842 -3.6441 29 6 0.6123 1.5941 -4.3552 30 1 -0.3634 0.4100 -0.9422 31 1 -0.3634 -1.0211 0.1162 32 1 -0.3633 0.6111 0.8264 33 1 1.6055 -1.7199 1.2949 34 1 3.1264 -0.7996 1.2053 35 1 2.4887 -1.2161 3.7905 36 1 1.7280 0.1085 4.4901 37 1 1.4397 1.8683 -1.9003 38 1 3.2154 1.8965 -2.1273 39 1 2.5176 0.3450 -5.6077 40 1 3.9610 0.8770 -4.6839 41 1 3.8953 -2.1663 -2.7759 42 1 4.3425 -1.7450 -4.4464 43 1 4.8050 -0.6719 -3.1038 44 1 3.6846 3.1473 -4.0606 45 1 2.5594 3.2204 -5.4381 46 1 2.1544 5.1622 -4.0145 47 1 2.0077 4.1260 -2.5729 48 1 -0.2708 8.2200 -4.7078 49 1 -1.2260 2.6715 -4.0077 50 1 -0.1864 2.5060 -2.5687 51 1 0.5051 1.7069 -5.4341 52 1 0.2450 0.6131 -4.0541 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707122993.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:42 Heat of formation + Delta-G solvation = -86.771807 kcal Electronic energy + Delta-G solvation = -31831.825188 eV Core-core repulsion = 27830.130362 eV Total energy + Delta-G solvation = -4001.694826 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.95653 -40.75030 -39.74734 -37.71497 -35.28986 -34.78452 -34.65590 -33.10028 -32.51428 -31.97385 -29.00352 -28.81438 -26.95852 -25.92659 -25.28008 -24.37710 -22.92515 -22.24437 -21.10108 -20.25409 -19.51479 -18.71744 -18.43855 -17.97141 -17.47173 -17.14760 -17.04096 -16.38627 -15.99403 -15.74030 -15.56790 -15.35902 -15.17827 -15.09578 -14.73793 -14.59796 -14.29658 -14.24830 -13.96943 -13.80366 -13.54094 -13.46234 -13.17897 -13.15358 -12.97935 -12.82041 -12.54105 -12.32718 -12.24438 -12.21312 -12.11140 -12.07594 -11.96131 -11.59799 -11.52070 -11.14339 -11.09055 -11.04192 -10.68630 -10.62060 -10.54899 -9.64339 -8.81996 -8.15556 -5.49827 1.29884 1.43152 1.51540 1.55751 1.63689 1.90541 2.42820 2.65191 3.10188 3.36275 3.38372 3.46605 3.59363 3.79829 3.85999 3.92125 4.13015 4.14724 4.16390 4.28951 4.36093 4.39736 4.46453 4.47338 4.57221 4.61947 4.64544 4.68275 4.71904 4.78878 4.80831 4.86225 4.88438 4.94029 5.00107 5.05009 5.11775 5.19666 5.22798 5.24731 5.29046 5.30719 5.40080 5.47597 5.53974 5.92267 5.92494 6.15936 6.45376 6.50645 6.96776 7.12026 7.36386 7.65354 8.06803 9.04894 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010683 B = 0.004233 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.342607 B = 6613.882861 C = 8388.566616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 H 0.089 0.911 4 C -0.119 4.119 5 C 0.516 3.484 6 N -0.837 5.837 7 O -0.584 6.584 8 C 0.538 3.462 9 O -0.567 6.567 10 N -0.607 5.607 11 C 0.106 3.894 12 C -0.056 4.056 13 C -0.108 4.108 14 C 0.132 3.868 15 H 0.068 0.932 16 C -0.152 4.152 17 C -0.108 4.108 18 C 0.120 3.880 19 N -0.617 5.617 20 C -0.247 4.247 21 H 0.047 0.953 22 C -0.030 4.030 23 N -0.959 5.959 24 Si 0.943 3.057 25 H -0.269 1.269 26 H -0.314 1.314 27 H -0.263 1.263 28 C 0.144 3.856 29 C -0.106 4.106 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.418 0.582 36 H 0.407 0.593 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.051 0.949 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.088 0.912 45 H 0.064 0.936 46 H 0.047 0.953 47 H 0.031 0.969 48 H 0.261 0.739 49 H 0.048 0.952 50 H 0.029 0.971 51 H 0.060 0.940 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.178 -21.410 11.632 27.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.113 4.113 3 H 0.107 0.893 4 C -0.159 4.159 5 C 0.302 3.698 6 N -0.402 5.402 7 O -0.464 6.464 8 C 0.328 3.672 9 O -0.447 6.447 10 N -0.339 5.339 11 C -0.017 4.017 12 C -0.057 4.057 13 C -0.146 4.146 14 C 0.030 3.970 15 H 0.086 0.914 16 C -0.210 4.210 17 C -0.147 4.147 18 C -0.005 4.005 19 N -0.342 5.342 20 C -0.377 4.377 21 H 0.065 0.935 22 C -0.224 4.224 23 N -0.605 5.605 24 Si 0.772 3.228 25 H -0.195 1.195 26 H -0.243 1.243 27 H -0.187 1.187 28 C 0.019 3.981 29 C -0.144 4.144 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.249 0.751 36 H 0.239 0.761 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.070 0.930 42 H 0.100 0.900 43 H 0.077 0.923 44 H 0.106 0.894 45 H 0.082 0.918 46 H 0.065 0.935 47 H 0.049 0.951 48 H 0.070 0.930 49 H 0.067 0.933 50 H 0.047 0.953 51 H 0.079 0.921 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.841 -21.346 11.430 26.953 hybrid contribution -0.053 0.895 0.836 1.226 sum 11.787 -20.451 12.266 26.602 Atomic orbital electron populations 1.21746 0.92242 1.02705 1.02949 1.20967 0.98351 1.00398 0.91607 0.89316 1.21468 1.04168 1.00402 0.89861 1.20774 0.77993 0.84738 0.86341 1.43709 1.59201 1.29925 1.07318 1.90759 1.41718 1.26553 1.87354 1.20366 0.76327 0.86719 0.83838 1.90637 1.54811 1.15184 1.84102 1.48677 1.66624 1.07638 1.10957 1.22476 1.02219 0.79667 0.97323 1.20889 0.95679 0.95299 0.93795 1.22753 1.01334 0.92198 0.98281 1.21692 0.97076 0.95541 0.82701 0.91438 1.22053 0.95830 1.00213 1.02925 1.21742 0.99120 0.92901 1.00934 1.21435 0.83916 0.98027 0.97120 1.44418 1.04859 1.10318 1.74558 1.18832 1.12192 0.85850 1.20800 0.93483 1.25946 1.00608 0.95491 1.00403 1.69953 1.51110 0.99872 1.39589 0.85942 0.78853 0.76121 0.81916 1.19530 1.24321 1.18713 1.21120 0.95822 0.84403 0.96746 1.21661 0.94203 0.98059 1.00513 0.92926 0.91729 0.90712 0.86555 0.86930 0.75051 0.76139 0.91108 0.90095 0.88916 0.88730 0.93012 0.90042 0.92257 0.89388 0.91751 0.93478 0.95095 0.93006 0.93290 0.95265 0.92089 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.84 71.98 0.64 -2.74 16 2 C -0.09 -2.08 1.86 -11.54 -0.02 -2.10 16 3 H 0.09 2.20 6.67 -2.38 -0.02 2.18 16 4 C -0.12 -2.01 4.72 29.84 0.14 -1.87 16 5 C 0.52 9.69 7.85 87.66 0.69 10.37 16 6 N -0.84 -8.28 8.87 -173.53 -1.54 -9.82 16 7 O -0.58 -16.70 14.81 -3.05 -0.05 -16.75 16 8 C 0.54 13.39 6.69 87.66 0.59 13.97 16 9 O -0.57 -16.26 15.20 -3.04 -0.05 -16.30 16 10 N -0.61 -14.21 3.06 -788.78 -2.41 -16.62 16 11 C 0.11 2.60 4.29 86.56 0.37 2.97 16 12 C -0.06 -1.41 0.54 -51.92 -0.03 -1.44 16 13 C -0.11 -2.05 5.43 31.56 0.17 -1.88 16 14 C 0.13 2.74 3.14 45.38 0.14 2.88 16 15 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 16 C -0.15 -2.79 9.10 71.98 0.65 -2.13 16 17 C -0.11 -3.14 4.83 30.41 0.15 -3.00 16 18 C 0.12 4.75 3.94 86.41 0.34 5.09 16 19 N -0.62 -28.16 2.70 -698.47 -1.89 -30.05 16 20 C -0.25 -13.96 10.00 84.03 0.84 -13.12 16 21 H 0.05 2.94 8.06 -2.91 -0.02 2.91 16 22 C -0.03 -1.74 5.23 84.86 0.44 -1.29 16 23 N -0.96 -60.57 13.97 21.65 0.30 -60.27 16 24 Si 0.94 46.67 24.39 68.60 1.67 48.35 16 25 H -0.27 -12.35 6.68 99.48 0.66 -11.69 16 26 H -0.31 -16.00 7.11 99.48 0.71 -15.30 16 27 H -0.26 -12.58 6.66 99.48 0.66 -11.91 16 28 C 0.14 5.43 6.20 86.41 0.54 5.96 16 29 C -0.11 -3.09 4.83 30.42 0.15 -2.94 16 30 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 2.03 6.10 -2.38 -0.01 2.01 16 33 H 0.12 1.74 8.02 -2.39 -0.02 1.72 16 34 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.42 1.34 8.83 -92.71 -0.82 0.52 16 36 H 0.41 3.54 8.93 -92.71 -0.83 2.71 16 37 H 0.07 2.00 5.38 -2.39 -0.01 1.99 16 38 H 0.08 1.81 7.97 -2.39 -0.02 1.79 16 39 H 0.09 1.63 8.01 -2.39 -0.02 1.61 16 40 H 0.09 1.52 7.69 -2.39 -0.02 1.51 16 41 H 0.05 1.15 6.73 -2.39 -0.02 1.14 16 42 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 44 H 0.09 2.06 8.09 -2.39 -0.02 2.04 16 45 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.05 2.10 4.81 -2.39 -0.01 2.09 16 47 H 0.03 1.20 6.56 -2.39 -0.02 1.18 16 48 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16 49 H 0.05 1.95 7.93 -2.39 -0.02 1.93 16 50 H 0.03 1.08 6.58 -2.38 -0.02 1.07 16 51 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 52 H 0.07 1.85 7.85 -2.39 -0.02 1.83 16 Total: -1.00 -75.79 388.59 1.05 -74.74 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -0.80 Total: 17.98 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 5.80 Total: 8.75 kcal Atomic # 7 Polarization: -111.23 SS G_CDS: -5.54 Total: -116.76 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -0.09 Total: -33.05 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 1.67 Total: 48.35 kcal Total: -75.79 1.05 -74.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707122993.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.031 kcal (2) G-P(sol) polarization free energy of solvation -75.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds