Wall clock time and date at job start Tue Mar 31 2020 21:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46796 * 2 1 4 4 C 1.52995 * 109.47259 * 120.00172 * 2 1 3 5 5 C 1.52996 * 109.47282 * 180.02562 * 4 2 1 6 6 C 1.53008 * 109.46771 * 299.99757 * 5 4 2 7 7 H 1.09000 * 109.46868 * 300.00048 * 6 5 4 8 8 C 1.50699 * 109.46645 * 180.02562 * 6 5 4 9 9 O 1.21286 * 119.99830 * 239.99642 * 8 6 5 10 10 N 1.34775 * 120.00041 * 60.00784 * 8 6 5 11 11 C 1.46506 * 119.99832 * 179.97438 * 10 8 6 12 12 H 1.09004 * 112.84527 * 23.80128 * 11 10 8 13 13 C 1.53778 * 113.61145 * 154.99410 * 11 10 8 14 14 C 1.53787 * 87.08035 * 140.06537 * 13 11 10 15 15 H 1.09004 * 113.61202 * 89.11582 * 14 13 11 16 16 N 1.46900 * 113.61643 * 220.02069 * 14 13 11 17 17 C 1.46903 * 110.99785 * 204.99836 * 16 14 13 18 18 C 1.50700 * 109.46732 * 179.97438 * 17 16 14 19 19 O 1.21292 * 120.00169 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99711 * 179.97438 * 18 17 16 21 21 C 1.37092 * 119.99985 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99825 * 0.02562 * 21 20 18 23 23 C 1.38951 * 120.00210 * 180.02562 * 21 20 18 24 24 N 1.31416 * 119.99815 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00112 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46976 * 60.00132 * 25 23 21 27 27 H 1.48499 * 109.47059 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47513 * 300.00250 * 25 23 21 29 29 C 1.53778 * 113.68980 * 252.53155 * 11 10 8 30 30 C 1.53002 * 109.47010 * 60.00364 * 6 5 4 31 31 C 1.53001 * 109.46971 * 240.00566 * 2 1 3 32 32 H 1.08996 * 109.47489 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47357 * 300.00010 * 1 2 3 34 34 H 1.09007 * 109.46908 * 59.99467 * 1 2 3 35 35 H 1.08999 * 109.47141 * 300.00563 * 4 2 1 36 36 H 1.09004 * 109.46860 * 59.99587 * 4 2 1 37 37 H 1.09007 * 109.46931 * 180.02562 * 5 4 2 38 38 H 1.08991 * 109.47431 * 59.99752 * 5 4 2 39 39 H 0.97000 * 120.00109 * 359.97438 * 10 8 6 40 40 H 1.08998 * 113.61879 * 25.52019 * 13 11 10 41 41 H 1.08997 * 113.69304 * 254.62106 * 13 11 10 42 42 H 1.00900 * 110.99925 * 81.04238 * 16 14 13 43 43 H 1.08996 * 109.46965 * 299.99722 * 17 16 14 44 44 H 1.09004 * 109.47006 * 59.99802 * 17 16 14 45 45 H 0.97001 * 119.99834 * 0.02562 * 20 18 17 46 46 H 0.97000 * 119.99937 * 179.97438 * 24 23 21 47 47 H 1.08993 * 113.61229 * 105.46247 * 29 11 10 48 48 H 1.09000 * 113.61263 * 334.55897 * 29 11 10 49 49 H 1.08999 * 109.46886 * 59.99465 * 30 6 5 50 50 H 1.08997 * 109.46778 * 179.97438 * 30 6 5 51 51 H 1.09000 * 109.47345 * 59.99830 * 31 2 1 52 52 H 1.09000 * 109.46487 * 299.99659 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7207 1.2495 6 6 4.0805 -1.4416 0.0002 7 1 3.7175 -2.4694 0.0000 8 6 5.5875 -1.4416 0.0008 9 8 6.1943 -0.9162 -0.9084 10 7 6.2609 -2.0256 1.0117 11 6 7.7260 -2.0261 1.0120 12 1 8.1495 -1.2155 0.4190 13 6 8.3415 -2.1492 2.4158 14 6 9.3891 -3.0843 1.7886 15 1 10.2675 -2.5630 1.4080 16 7 9.7296 -4.2371 2.6330 17 6 11.0733 -4.7411 2.3190 18 6 11.3868 -5.9202 3.2034 19 8 10.5711 -6.3034 4.0152 20 7 12.5734 -6.5497 3.0917 21 6 12.8589 -7.6221 3.8966 22 1 12.1329 -7.9627 4.6200 23 6 14.0823 -8.2707 3.7818 24 7 14.9660 -7.8558 2.9020 25 14 14.4711 -9.7323 4.8781 26 1 13.4724 -10.8061 4.6440 27 1 15.8296 -10.2414 4.5611 28 1 14.4205 -9.3111 6.3012 29 6 8.3435 -3.4009 0.7063 30 6 3.5705 -0.7203 -1.2490 31 6 2.0400 -0.7211 -1.2493 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3633 0.5140 -0.8900 35 1 1.6766 -0.2075 2.1392 36 1 1.6766 -1.7489 1.2491 37 1 3.9333 -1.2350 2.1393 38 1 3.9330 0.3070 1.2497 39 1 5.7756 -2.4457 1.7390 40 1 7.6904 -2.6441 3.1364 41 1 8.7597 -1.2164 2.7941 42 1 9.0393 -4.9675 2.5433 43 1 11.1104 -5.0499 1.2743 44 1 11.8063 -3.9530 2.4912 45 1 13.2256 -6.2435 2.4422 46 1 15.8202 -8.3084 2.8221 47 1 8.7629 -3.4778 -0.2967 48 1 7.6927 -4.2378 0.9595 49 1 3.9335 0.3075 -1.2487 50 1 3.9345 -1.2336 -2.1390 51 1 1.6766 -0.2073 -2.1393 52 1 1.6766 -1.7488 -1.2493 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713205438.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:38 Heat of formation + Delta-G solvation = -85.142264 kcal Electronic energy + Delta-G solvation = -28408.179008 eV Core-core repulsion = 24406.554844 eV Total energy + Delta-G solvation = -4001.624164 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.69571 -39.36144 -38.24528 -37.79004 -34.63424 -33.88716 -33.28897 -32.26593 -31.20080 -31.10368 -27.56886 -26.68492 -25.78505 -24.44566 -23.35286 -23.07581 -21.92444 -20.61697 -20.28958 -19.84536 -19.12410 -17.88121 -17.33166 -16.76067 -15.98443 -15.85495 -15.46193 -14.93630 -14.85681 -14.71433 -14.66465 -14.47266 -14.22815 -14.04837 -13.63897 -13.40723 -13.24320 -13.00766 -12.79922 -12.65711 -12.59486 -12.55185 -12.10907 -11.94697 -11.64793 -11.55607 -11.53977 -11.38361 -11.23755 -11.09587 -11.04634 -10.96366 -10.82562 -10.76530 -10.44755 -10.44235 -10.21257 -9.82822 -9.50218 -9.19779 -8.45136 -8.02655 -7.95239 -6.41634 -3.82603 2.41203 2.95357 3.20039 3.25809 3.30160 3.90880 4.10237 4.17766 4.19248 4.25969 4.30784 4.47821 4.56191 4.62895 4.65042 4.73878 4.81682 4.88505 4.93924 5.01928 5.05847 5.11137 5.18429 5.22157 5.27421 5.35627 5.39158 5.44416 5.49678 5.59723 5.62283 5.65907 5.67015 5.75456 5.78961 5.80593 5.82495 5.83796 5.91523 5.92543 5.98915 6.02593 6.06991 6.27397 6.40431 7.23624 7.30515 7.54886 7.64899 8.02060 8.06021 8.61206 9.17637 9.54263 10.05685 10.75979 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.031037 B = 0.001500 C = 0.001471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.919483 B =18657.055687 C =19032.876511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 H 0.070 0.930 4 C -0.113 4.113 5 C -0.110 4.110 6 C -0.107 4.107 7 H 0.096 0.904 8 C 0.517 3.483 9 O -0.542 6.542 10 N -0.717 5.717 11 C 0.121 3.879 12 H 0.114 0.886 13 C -0.133 4.133 14 C 0.071 3.929 15 H 0.099 0.901 16 N -0.654 5.654 17 C 0.049 3.951 18 C 0.440 3.560 19 O -0.585 6.585 20 N -0.563 5.563 21 C -0.301 4.301 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.273 1.273 29 C -0.181 4.181 30 C -0.099 4.099 31 C -0.114 4.114 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.401 0.599 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.351 0.649 43 H 0.044 0.956 44 H 0.086 0.914 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.070 0.930 48 H 0.087 0.913 49 H 0.069 0.931 50 H 0.069 0.931 51 H 0.065 0.935 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.612 16.612 -7.787 30.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 H 0.089 0.911 4 C -0.150 4.150 5 C -0.148 4.148 6 C -0.128 4.128 7 H 0.114 0.886 8 C 0.303 3.697 9 O -0.419 6.419 10 N -0.368 5.368 11 C 0.016 3.984 12 H 0.131 0.869 13 C -0.172 4.172 14 C -0.041 4.041 15 H 0.117 0.883 16 N -0.286 5.286 17 C -0.083 4.083 18 C 0.225 3.775 19 O -0.469 6.469 20 N -0.200 5.200 21 C -0.431 4.431 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.222 4.222 30 C -0.137 4.137 31 C -0.152 4.152 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.236 0.764 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.172 0.828 43 H 0.063 0.937 44 H 0.105 0.895 45 H 0.226 0.774 46 H 0.082 0.918 47 H 0.089 0.911 48 H 0.105 0.895 49 H 0.088 0.912 50 H 0.088 0.912 51 H 0.083 0.917 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.286 17.020 -7.401 30.566 hybrid contribution 0.403 -1.276 -0.401 1.397 sum -23.883 15.744 -7.801 29.650 Atomic orbital electron populations 1.21834 0.95222 1.01825 1.01650 1.21180 0.95431 0.99811 0.94951 0.91144 1.21590 0.94560 1.01052 0.97816 1.21533 0.96257 1.01071 0.95958 1.21381 0.91344 1.02119 0.97988 0.88569 1.20742 0.90032 0.77288 0.81633 1.90695 1.70426 1.45005 1.35747 1.46035 1.07074 1.58395 1.25256 1.22402 0.79104 0.98381 0.98542 0.86854 1.23463 0.97956 1.00167 0.95580 1.22817 0.96063 0.93585 0.91605 0.88262 1.60014 1.03492 1.10279 1.54773 1.21725 0.91815 0.97521 0.97262 1.19831 0.83961 0.86169 0.87502 1.90516 1.48481 1.68147 1.39791 1.41860 1.14486 1.28466 1.35147 1.19658 1.01046 1.06247 1.16104 0.87982 1.25261 0.95543 0.99440 0.97638 1.69606 1.07927 1.41832 1.34916 0.85914 0.77375 0.80855 0.80044 1.19933 1.20969 1.19884 1.24233 0.99287 0.97949 1.00718 1.21345 0.94777 1.01282 0.96273 1.21635 0.95129 1.00789 0.97646 0.92678 0.92725 0.92725 0.91560 0.91641 0.91345 0.91317 0.76440 0.89057 0.90660 0.82846 0.93750 0.89549 0.77441 0.91814 0.91118 0.89497 0.91215 0.91228 0.91658 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.19 37.16 0.34 -0.33 16 2 C -0.10 -0.50 2.72 -90.62 -0.25 -0.74 16 3 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 4 C -0.11 -0.55 5.20 -26.74 -0.14 -0.69 16 5 C -0.11 -0.63 5.10 -26.73 -0.14 -0.76 16 6 C -0.11 -0.76 2.53 -91.77 -0.23 -0.99 16 7 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 8 C 0.52 5.21 7.15 -10.99 -0.08 5.13 16 9 O -0.54 -7.63 15.58 5.55 0.09 -7.55 16 10 N -0.72 -6.16 5.25 -53.01 -0.28 -6.44 16 11 C 0.12 1.19 4.24 -67.12 -0.28 0.91 16 12 H 0.11 1.26 7.46 -51.93 -0.39 0.87 16 13 C -0.13 -1.32 7.63 -25.92 -0.20 -1.52 16 14 C 0.07 0.84 4.18 -66.90 -0.28 0.56 16 15 H 0.10 1.11 7.87 -51.93 -0.41 0.70 16 16 N -0.65 -10.20 6.24 -107.12 -0.67 -10.87 16 17 C 0.05 0.86 6.01 -4.97 -0.03 0.83 16 18 C 0.44 10.37 7.82 -10.98 -0.09 10.28 16 19 O -0.58 -15.84 15.78 5.55 0.09 -15.75 16 20 N -0.56 -14.30 5.29 -10.96 -0.06 -14.35 16 21 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 22 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -24.55 13.05 55.50 0.72 -23.82 16 25 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 29 C -0.18 -1.93 7.50 -25.92 -0.19 -2.13 16 30 C -0.10 -0.75 4.50 -26.70 -0.12 -0.87 16 31 C -0.11 -0.65 5.21 -26.70 -0.14 -0.79 16 32 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.33 7.56 -51.93 -0.39 -0.07 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.40 2.56 8.14 -40.82 -0.33 2.23 16 40 H 0.09 0.91 8.12 -51.93 -0.42 0.49 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.35 5.65 7.90 -39.29 -0.31 5.34 16 43 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 1.39 8.13 -51.93 -0.42 0.97 16 45 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 46 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 47 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.09 0.93 7.82 -51.93 -0.41 0.52 16 49 H 0.07 0.61 8.10 -51.93 -0.42 0.18 16 50 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 51 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 52 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 414.64 15.07 6.25 6.25 Total: -1.00 -32.75 414.64 -10.20 -42.94 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -9.25 Total: 12.73 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -2.06 Total: 0.83 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: -0.28 Total: -55.49 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: 0.17 Total: -23.30 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.75 -10.20 -42.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713205438.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.197 kcal (2) G-P(sol) polarization free energy of solvation -32.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds