Wall clock time and date at job start Tue Mar 31 2020 21:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 109.51875 * 2 1 4 4 C 1.53039 * 109.49809 * 120.07407 * 2 1 3 5 5 C 1.53037 * 109.53820 * 181.31823 * 4 2 1 6 6 C 1.53197 * 109.31122 * 298.63890 * 5 4 2 7 7 N 1.46922 * 108.77498 * 54.63642 * 6 5 4 8 8 C 1.34777 * 120.63074 * 126.41383 * 7 6 5 9 9 O 1.21349 * 120.00201 * 175.26367 * 8 7 6 10 10 C 1.49449 * 120.00208 * 355.26670 * 8 7 6 11 11 O 1.21351 * 119.99826 * 6.35194 * 10 8 7 12 12 N 1.34777 * 120.00409 * 186.35878 * 10 8 7 13 13 C 1.47023 * 125.64499 * 0.02562 * 12 10 8 14 14 C 1.54321 * 107.26920 * 178.90471 * 13 12 10 15 15 C 1.55158 * 102.94545 * 337.80359 * 14 13 12 16 16 H 1.08994 * 111.01083 * 277.39449 * 15 14 13 17 17 C 1.52999 * 111.00412 * 153.57380 * 15 14 13 18 18 N 1.46506 * 109.47045 * 175.00376 * 17 15 14 19 19 C 1.46499 * 119.99827 * 270.00227 * 18 17 15 20 20 C 1.36938 * 119.99740 * 90.00091 * 18 17 15 21 21 H 1.07997 * 120.00196 * 34.50226 * 20 18 17 22 22 C 1.38807 * 119.99817 * 214.49811 * 20 18 17 23 23 N 1.31616 * 120.00345 * 5.22541 * 22 20 18 24 24 Si 1.86803 * 119.99928 * 185.22491 * 22 20 18 25 25 H 1.48496 * 109.47201 * 89.99957 * 24 22 20 26 26 H 1.48500 * 109.47092 * 210.00262 * 24 22 20 27 27 H 1.48502 * 109.47084 * 330.00051 * 24 22 20 28 28 C 1.47422 * 125.64868 * 179.71219 * 12 10 8 29 29 C 1.46921 * 118.73909 * 306.38548 * 7 6 5 30 30 H 1.08993 * 109.46877 * 299.92090 * 1 2 3 31 31 H 1.08996 * 109.47036 * 59.92089 * 1 2 3 32 32 H 1.09001 * 109.46577 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.46273 * 301.34103 * 4 2 1 34 34 H 1.09002 * 109.45985 * 61.30147 * 4 2 1 35 35 H 1.08994 * 109.49714 * 58.58781 * 5 4 2 36 36 H 1.09004 * 109.49816 * 178.69129 * 5 4 2 37 37 H 1.09000 * 109.58209 * 174.42433 * 6 5 4 38 38 H 1.09000 * 109.58709 * 294.69781 * 6 5 4 39 39 H 1.08996 * 109.88202 * 298.31981 * 13 12 10 40 40 H 1.08999 * 109.88049 * 59.33387 * 13 12 10 41 41 H 1.08993 * 110.72259 * 96.17209 * 14 13 12 42 42 H 1.09004 * 110.71853 * 219.44188 * 14 13 12 43 43 H 1.09004 * 109.47265 * 295.00266 * 17 15 14 44 44 H 1.08998 * 109.46995 * 55.00579 * 17 15 14 45 45 H 1.09001 * 109.47112 * 85.03553 * 19 18 17 46 46 H 1.09005 * 109.46903 * 205.02663 * 19 18 17 47 47 H 1.08993 * 109.47254 * 325.02856 * 19 18 17 48 48 H 0.97008 * 120.00643 * 179.97438 * 23 22 20 49 49 H 1.09001 * 110.37160 * 323.00361 * 28 12 10 50 50 H 1.08996 * 110.36689 * 85.32929 * 28 12 10 51 51 H 1.09001 * 109.58973 * 293.82593 * 29 7 6 52 52 H 1.09004 * 109.59192 * 173.39650 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0409 -0.7229 1.2484 5 6 3.5709 -0.6948 1.2661 6 6 4.1053 -1.4266 0.0308 7 7 3.5047 -0.8290 -1.1695 8 6 4.2812 -0.3863 -2.1782 9 8 3.7722 0.0260 -3.1998 10 6 5.7691 -0.4033 -2.0388 11 8 6.2816 -0.9204 -1.0680 12 7 6.5416 0.1559 -2.9911 13 6 6.0547 0.8137 -4.2125 14 6 7.2912 1.3227 -4.9828 15 6 8.3738 1.4221 -3.8757 16 1 8.2830 2.3572 -3.3232 17 6 9.7772 1.2713 -4.4659 18 7 10.7748 1.4887 -3.4152 19 6 11.2916 2.8361 -3.1634 20 6 11.2241 0.4323 -2.6686 21 1 11.3291 -0.5427 -3.1209 22 6 11.5445 0.6148 -1.3304 23 7 11.3200 1.7756 -0.7523 24 14 12.2945 -0.7874 -0.3500 25 1 13.7745 -0.7291 -0.4557 26 1 11.8946 -0.6644 1.0749 27 1 11.8103 -2.0833 -0.8899 28 6 8.0146 0.2150 -2.9774 29 6 2.0414 -0.7238 -1.2495 30 1 -0.3633 0.5126 0.8906 31 1 -0.3633 0.5150 -0.8892 32 1 -0.3632 -1.0277 -0.0005 33 1 1.6582 -0.2243 2.1389 34 1 1.6969 -1.7572 1.2354 35 1 3.9159 0.3390 1.2541 36 1 3.9335 -1.1895 2.1672 37 1 5.1896 -1.3244 -0.0136 38 1 3.8399 -2.4822 0.0881 39 1 5.5051 0.0987 -4.8246 40 1 5.4080 1.6509 -3.9499 41 1 7.5887 0.6081 -5.7501 42 1 7.0966 2.3017 -5.4208 43 1 9.8934 0.2677 -4.8752 44 1 9.9187 2.0057 -5.2588 45 1 10.6183 3.3630 -2.4872 46 1 12.2807 2.7671 -2.7103 47 1 11.3605 3.3807 -4.1050 48 1 11.5436 1.9031 0.1831 49 1 8.3785 0.3752 -1.9625 50 1 8.4349 -0.7014 -3.3917 51 1 1.6054 -1.7216 -1.2979 52 1 1.7638 -0.1580 -2.1389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713756684.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:38 Heat of formation + Delta-G solvation = -33.435779 kcal Electronic energy + Delta-G solvation = -30905.005506 eV Core-core repulsion = 26905.623504 eV Total energy + Delta-G solvation = -3999.382002 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -40.94813 -39.18714 -37.72052 -37.56731 -35.33583 -33.86063 -32.17860 -31.99115 -30.65102 -28.78354 -27.51259 -26.54403 -25.81319 -25.51759 -23.62873 -22.44851 -22.02676 -21.16580 -20.21604 -19.52254 -19.10465 -17.05529 -16.97940 -16.69532 -16.14425 -15.84902 -15.39168 -15.24272 -14.66226 -14.49553 -14.26113 -14.16864 -13.64072 -13.56426 -13.33508 -13.20872 -13.00129 -12.94218 -12.81060 -12.45036 -12.33208 -12.15943 -12.01399 -11.84919 -11.50109 -11.28576 -11.24290 -11.07489 -10.93157 -10.87470 -10.73693 -10.64110 -10.45775 -10.35487 -10.26994 -10.01344 -9.96690 -9.74476 -8.88353 -8.82296 -8.49298 -8.40910 -6.59290 -5.75639 -3.30369 1.55162 2.36099 3.32533 3.39579 3.47421 3.48132 3.49606 4.22651 4.47941 4.50937 4.53359 4.65283 4.89615 4.96292 5.09593 5.11284 5.20490 5.26671 5.27003 5.37543 5.44981 5.45642 5.51202 5.56960 5.63332 5.75720 5.81024 5.82507 5.84731 5.85927 5.92862 6.00876 6.08670 6.12755 6.18386 6.25382 6.28007 6.35128 6.50783 6.52968 6.67349 6.77542 6.82119 7.03068 7.09021 7.32101 7.52494 7.68134 7.82575 7.83313 8.16397 8.48497 9.25407 9.84931 10.40768 11.30156 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013819 B = 0.003179 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.636645 B = 8806.429166 C =10173.039997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 H 0.074 0.926 4 C -0.117 4.117 5 C -0.133 4.133 6 C 0.041 3.959 7 N -0.582 5.582 8 C 0.512 3.488 9 O -0.523 6.523 10 C 0.516 3.484 11 O -0.512 6.512 12 N -0.581 5.581 13 C 0.108 3.892 14 C -0.134 4.134 15 C -0.113 4.113 16 H 0.078 0.922 17 C 0.163 3.837 18 N -0.598 5.598 19 C 0.161 3.839 20 C -0.261 4.261 21 H 0.062 0.938 22 C 0.016 3.984 23 N -0.899 5.899 24 Si 0.898 3.102 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.277 1.277 28 C 0.124 3.876 29 C 0.113 3.887 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.165 0.835 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.046 0.954 44 H 0.042 0.958 45 H 0.019 0.981 46 H 0.048 0.952 47 H -0.006 1.006 48 H 0.253 0.747 49 H 0.096 0.904 50 H 0.071 0.929 51 H 0.069 0.931 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.154 -2.854 -1.589 19.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 H 0.093 0.907 4 C -0.154 4.154 5 C -0.171 4.171 6 C -0.079 4.079 7 N -0.315 5.315 8 C 0.294 3.706 9 O -0.400 6.400 10 C 0.299 3.701 11 O -0.391 6.391 12 N -0.313 5.313 13 C -0.014 4.014 14 C -0.173 4.173 15 C -0.136 4.136 16 H 0.097 0.903 17 C 0.035 3.965 18 N -0.321 5.321 19 C 0.016 3.984 20 C -0.391 4.391 21 H 0.080 0.920 22 C -0.184 4.184 23 N -0.542 5.542 24 Si 0.728 3.272 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.202 1.202 28 C 0.004 3.996 29 C -0.009 4.009 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.181 0.819 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.037 0.963 46 H 0.067 0.933 47 H 0.013 0.987 48 H 0.064 0.936 49 H 0.114 0.886 50 H 0.089 0.911 51 H 0.087 0.913 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.122 -2.869 -1.415 19.388 hybrid contribution 0.059 -0.707 0.913 1.156 sum -19.063 -3.576 -0.502 19.402 Atomic orbital electron populations 1.21760 0.94300 1.02024 1.02089 1.21512 0.95913 1.00245 0.94985 0.90717 1.21634 0.95944 1.00568 0.97269 1.21893 0.95236 1.01684 0.98286 1.23434 1.06197 0.95946 0.82327 1.47942 1.06385 1.58820 1.18355 1.20139 0.88111 0.78632 0.83672 1.90708 1.75136 1.46123 1.28002 1.19689 0.87265 0.80280 0.82830 1.90260 1.73770 1.45857 1.29255 1.48615 1.09046 1.53263 1.20397 1.22154 0.96702 0.97318 0.85273 1.22808 0.94673 1.01495 0.98291 1.23134 0.97162 0.98026 0.95231 0.90330 1.20833 0.85866 0.98779 0.91067 1.43845 1.43527 1.05263 1.39417 1.20748 0.98646 0.84878 0.94089 1.19048 1.39432 0.90363 0.90256 0.92002 1.25273 1.00056 0.96629 0.96485 1.69986 1.50091 1.22675 1.11465 0.86368 0.78837 0.82334 0.79704 1.21484 1.21578 1.20242 1.22423 0.75100 0.98714 1.03371 1.21767 0.79054 1.00989 0.99128 0.92251 0.92374 0.92478 0.91769 0.91846 0.91582 0.90542 0.81911 0.91875 0.90827 0.91172 0.90725 0.90408 0.93536 0.93920 0.96300 0.93297 0.98741 0.93647 0.88605 0.91052 0.91254 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.20 37.16 0.34 -0.65 16 2 C -0.11 -0.96 2.87 -90.50 -0.26 -1.22 16 3 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 4 C -0.12 -1.01 5.17 -26.69 -0.14 -1.14 16 5 C -0.13 -1.40 6.08 -26.61 -0.16 -1.56 16 6 C 0.04 0.52 6.28 -3.71 -0.02 0.49 16 7 N -0.58 -7.71 2.97 -173.28 -0.51 -8.22 16 8 C 0.51 8.05 7.71 -11.59 -0.09 7.96 16 9 O -0.52 -8.63 13.60 5.50 0.07 -8.56 16 10 C 0.52 9.13 7.84 -11.59 -0.09 9.04 16 11 O -0.51 -9.95 13.27 5.50 0.07 -9.88 16 12 N -0.58 -10.16 3.33 -171.17 -0.57 -10.73 16 13 C 0.11 1.59 5.50 -3.06 -0.02 1.57 16 14 C -0.13 -1.83 6.42 -24.90 -0.16 -1.99 16 15 C -0.11 -2.01 3.24 -88.59 -0.29 -2.30 16 16 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 17 C 0.16 3.12 5.24 -4.04 -0.02 3.10 16 18 N -0.60 -14.36 2.87 -181.12 -0.52 -14.88 16 19 C 0.16 3.83 9.05 59.85 0.54 4.38 16 20 C -0.26 -6.88 8.86 -15.06 -0.13 -7.01 16 21 H 0.06 1.62 7.83 -52.49 -0.41 1.21 16 22 C 0.02 0.43 5.17 -17.43 -0.09 0.34 16 23 N -0.90 -25.66 11.12 55.49 0.62 -25.04 16 24 Si 0.90 21.78 29.56 -169.99 -5.02 16.75 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 C 0.12 2.41 5.68 -2.65 -0.02 2.40 16 29 C 0.11 1.19 5.70 -3.71 -0.02 1.17 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.17 2.51 3.71 -57.19 -0.21 2.30 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 1.04 7.57 -51.93 -0.39 0.65 16 40 H 0.07 1.03 7.72 -51.93 -0.40 0.63 16 41 H 0.07 0.93 8.04 -51.93 -0.42 0.51 16 42 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.05 0.87 7.86 -51.93 -0.41 0.46 16 44 H 0.04 0.74 7.94 -51.93 -0.41 0.33 16 45 H 0.02 0.48 7.73 -51.93 -0.40 0.08 16 46 H 0.05 1.26 7.26 -51.93 -0.38 0.88 16 47 H -0.01 -0.12 7.96 -51.93 -0.41 -0.54 16 48 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 49 H 0.10 2.27 8.04 -51.93 -0.42 1.86 16 50 H 0.07 1.40 7.90 -51.93 -0.41 0.99 16 51 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 52 H 0.09 1.05 7.03 -51.93 -0.37 0.68 16 LS Contribution 400.66 15.07 6.04 6.04 Total: -1.00 -29.81 400.66 -9.70 -39.50 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -9.25 Total: 0.43 kcal Atomic # 6 Polarization: 15.20 SS G_CDS: -0.62 Total: 14.57 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -0.99 Total: -58.86 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: 0.15 Total: -18.43 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.81 -9.70 -39.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713756684.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.068 kcal (2) G-P(sol) polarization free energy of solvation -29.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds