Wall clock time and date at job start Tue Mar 31 2020 21:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47067 * 2 1 4 4 C 1.52997 * 109.47143 * 239.99982 * 2 1 3 5 5 C 1.53002 * 109.46817 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47233 * 60.00194 * 5 4 2 7 7 C 1.52997 * 109.47060 * 299.99657 * 6 5 4 8 8 H 1.08996 * 109.47853 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.47238 * 300.00442 * 7 6 5 10 10 O 1.21279 * 120.00072 * 119.99863 * 9 7 6 11 11 N 1.34777 * 119.99762 * 300.00068 * 9 7 6 12 12 C 1.46496 * 120.00258 * 180.02562 * 11 9 7 13 13 C 1.52993 * 109.47551 * 179.97438 * 12 11 9 14 14 C 1.53936 * 113.73143 * 271.72711 * 13 12 11 15 15 N 1.47960 * 86.18155 * 221.91675 * 14 13 12 16 16 C 1.46906 * 110.99979 * 137.57831 * 15 14 13 17 17 C 1.50707 * 109.46635 * 90.64450 * 16 15 14 18 18 O 1.21293 * 119.99951 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99655 * 179.97438 * 17 16 15 20 20 C 1.37094 * 119.99893 * 179.97438 * 19 17 16 21 21 H 1.08004 * 119.99720 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99772 * 180.02562 * 20 19 17 23 23 N 1.31406 * 120.00496 * 0.02562 * 22 20 19 24 24 Si 1.86810 * 119.99741 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46898 * 90.00066 * 24 22 20 26 26 H 1.48499 * 109.46892 * 210.00190 * 24 22 20 27 27 H 1.48497 * 109.46913 * 330.00180 * 24 22 20 28 28 C 1.47965 * 90.76160 * 24.68884 * 15 14 13 29 29 C 1.52999 * 109.47317 * 59.99960 * 7 6 5 30 30 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47312 * 300.00027 * 1 2 3 32 32 H 1.09004 * 109.46930 * 60.00083 * 1 2 3 33 33 H 1.08993 * 109.47194 * 59.99677 * 4 2 1 34 34 H 1.09002 * 109.46695 * 299.99691 * 4 2 1 35 35 H 1.08992 * 109.47063 * 299.99823 * 5 4 2 36 36 H 1.09004 * 109.46733 * 179.97438 * 5 4 2 37 37 H 1.09002 * 109.47398 * 59.99826 * 6 5 4 38 38 H 1.09001 * 109.47194 * 180.02562 * 6 5 4 39 39 H 0.96999 * 120.00047 * 359.97438 * 11 9 7 40 40 H 1.09004 * 109.46875 * 299.99676 * 12 11 9 41 41 H 1.09000 * 109.47024 * 59.99522 * 12 11 9 42 42 H 1.08998 * 112.94304 * 43.42629 * 13 12 11 43 43 H 1.08998 * 113.76400 * 336.23345 * 14 13 12 44 44 H 1.09000 * 113.76244 * 107.60120 * 14 13 12 45 45 H 1.08995 * 109.46938 * 210.63992 * 16 15 14 46 46 H 1.08996 * 109.47439 * 330.64579 * 16 15 14 47 47 H 0.97001 * 119.99954 * 0.02562 * 19 17 16 48 48 H 0.97003 * 120.00584 * 179.97438 * 23 22 20 49 49 H 1.08996 * 113.75924 * 220.99005 * 28 15 14 50 50 H 1.09005 * 113.75650 * 89.62286 * 28 15 14 51 51 H 1.09000 * 109.47486 * 180.02562 * 29 7 6 52 52 H 1.09002 * 109.46716 * 60.00091 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0795 -1.4434 0.0004 7 6 3.5695 -0.7222 1.2496 8 1 3.9327 -1.2359 2.1397 9 6 4.0723 0.6986 1.2499 10 8 3.2845 1.6206 1.2499 11 7 5.3974 0.9444 1.2502 12 6 5.8863 2.3254 1.2511 13 6 7.4162 2.3249 1.2519 14 6 8.0350 2.2816 2.6607 15 7 9.0016 3.2834 2.1593 16 6 9.2318 4.3377 3.1560 17 6 10.3900 3.9500 4.0389 18 8 10.9671 2.8990 3.8555 19 7 10.7851 4.7715 5.0316 20 6 11.8383 4.4186 5.8351 21 1 12.3517 3.4824 5.6723 22 6 12.2453 5.2654 6.8589 23 7 11.6204 6.4042 7.0573 24 14 13.6809 4.7848 7.9533 25 1 14.9448 5.2955 7.3644 26 1 13.4916 5.3717 9.3042 27 1 13.7474 3.3053 8.0612 28 6 8.0364 3.7285 1.1299 29 6 2.0395 -0.7215 1.2493 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6767 -0.2075 -2.1392 34 1 1.6767 -1.7489 -1.2491 35 1 3.9337 0.3057 -1.2486 36 1 3.9334 -1.2360 -2.1386 37 1 3.7158 -2.4710 0.0002 38 1 5.1695 -1.4434 0.0009 39 1 6.0275 0.2069 1.2506 40 1 5.5233 2.8398 0.3613 41 1 5.5230 2.8388 2.1413 42 1 7.8413 1.5961 0.5618 43 1 7.3757 2.6601 3.4418 44 1 8.4875 1.3224 2.9124 45 1 9.4601 5.2745 2.6478 46 1 8.3368 4.4635 3.7652 47 1 10.3237 5.6122 5.1780 48 1 11.9042 6.9952 7.7722 49 1 8.4899 3.9254 0.1586 50 1 7.3773 4.5302 1.4633 51 1 1.6761 -0.2073 2.1391 52 1 1.6758 -1.7491 1.2491 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713916455.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:22 Heat of formation + Delta-G solvation = -62.823334 kcal Electronic energy + Delta-G solvation = -29155.652692 eV Core-core repulsion = 25154.996349 eV Total energy + Delta-G solvation = -4000.656342 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.89596 -39.99869 -37.91309 -37.55588 -35.00007 -33.87546 -33.08536 -31.44336 -31.26053 -30.63070 -27.51237 -26.62330 -26.06811 -24.98787 -23.69282 -22.43606 -22.09372 -20.88201 -20.20751 -19.36133 -19.03312 -17.85456 -16.78109 -16.58803 -16.15276 -16.04042 -15.46283 -15.25824 -14.96601 -14.82881 -14.70261 -14.45953 -14.03222 -14.01419 -13.67606 -13.55307 -13.26720 -12.95137 -12.69831 -12.59863 -12.42614 -12.36683 -12.19751 -12.09957 -11.75358 -11.60908 -11.45609 -11.33842 -11.29058 -11.06297 -10.87683 -10.67585 -10.63857 -10.44315 -10.38523 -10.35119 -10.19820 -9.68818 -9.48499 -9.21724 -8.72426 -8.16342 -7.94319 -6.39941 -3.80743 2.46190 2.95127 3.18695 3.26959 3.32790 3.89449 3.94858 4.21225 4.24866 4.30410 4.35338 4.39390 4.58694 4.67974 4.81011 4.84556 4.97446 5.03960 5.06076 5.09470 5.18123 5.21718 5.22685 5.33967 5.38294 5.39052 5.47812 5.51978 5.52973 5.56278 5.60684 5.66671 5.68710 5.68979 5.72734 5.76565 5.86940 5.87833 5.93826 5.99833 6.06363 6.11879 6.25667 6.29115 6.41235 6.58282 7.16937 7.29475 7.56518 8.05042 8.07884 8.64172 9.20218 9.56775 10.09251 10.77943 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026292 B = 0.001717 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.708518 B =16302.797676 C =16426.235451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 H 0.100 0.900 4 C -0.113 4.113 5 C -0.123 4.123 6 C -0.110 4.110 7 C -0.111 4.111 8 H 0.097 0.903 9 C 0.519 3.481 10 O -0.537 6.537 11 N -0.728 5.728 12 C 0.128 3.872 13 C -0.130 4.130 14 C 0.016 3.984 15 N -0.449 5.449 16 C 0.010 3.990 17 C 0.446 3.554 18 O -0.576 6.576 19 N -0.567 5.567 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.008 3.992 29 C -0.092 4.092 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.401 0.599 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.105 0.895 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.058 0.942 47 H 0.391 0.609 48 H 0.271 0.729 49 H 0.091 0.909 50 H 0.071 0.929 51 H 0.068 0.932 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.521 -12.721 -15.620 28.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.125 4.125 3 H 0.118 0.882 4 C -0.151 4.151 5 C -0.161 4.161 6 C -0.148 4.148 7 C -0.132 4.132 8 H 0.115 0.885 9 C 0.306 3.694 10 O -0.414 6.414 11 N -0.379 5.379 12 C 0.004 3.996 13 C -0.149 4.149 14 C -0.113 4.113 15 N -0.171 5.171 16 C -0.122 4.122 17 C 0.231 3.769 18 O -0.459 6.459 19 N -0.205 5.205 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.195 1.195 28 C -0.121 4.121 29 C -0.129 4.129 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.236 0.764 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.123 0.877 43 H 0.087 0.913 44 H 0.109 0.891 45 H 0.106 0.894 46 H 0.076 0.924 47 H 0.224 0.776 48 H 0.081 0.919 49 H 0.109 0.891 50 H 0.089 0.911 51 H 0.086 0.914 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.974 -12.787 -15.760 28.475 hybrid contribution 0.093 0.465 1.121 1.217 sum -19.881 -12.322 -14.640 27.593 Atomic orbital electron populations 1.21786 0.95603 1.01142 1.01569 1.21419 0.95242 1.02147 0.93735 0.88237 1.21600 0.95055 1.00427 0.98012 1.21568 0.96235 1.00790 0.97459 1.21536 1.00436 0.99525 0.93257 1.21400 0.98170 0.93210 1.00401 0.88525 1.20606 0.82024 0.91467 0.75314 1.90632 1.54992 1.46500 1.49248 1.46060 1.07178 1.09048 1.75649 1.21418 0.92856 0.82927 1.02366 1.23279 0.93118 0.99351 0.99191 1.24042 0.93281 0.99288 0.94709 1.68382 1.31599 1.08765 1.08348 1.22486 0.98565 0.96065 0.95126 1.19696 0.87125 0.86402 0.83628 1.90515 1.58096 1.25063 1.72275 1.41881 1.30587 1.19946 1.28059 1.19694 1.08233 1.05673 1.09166 0.87979 1.25253 0.99175 0.95388 0.98194 1.69610 1.41469 1.10502 1.32876 0.85862 0.80772 0.78871 0.78804 1.20410 1.20955 1.19466 1.23957 0.94097 0.95273 0.98792 1.21368 0.92062 1.00481 0.99024 0.93240 0.92744 0.92996 0.92219 0.92269 0.91982 0.91742 0.90728 0.91460 0.76429 0.91236 0.91331 0.87681 0.91326 0.89103 0.89409 0.92445 0.77559 0.91918 0.89065 0.91126 0.91373 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.19 37.16 0.34 -0.72 16 2 C -0.11 -0.90 2.43 -90.62 -0.22 -1.11 16 3 H 0.10 1.11 5.51 -51.93 -0.29 0.82 16 4 C -0.11 -0.80 5.20 -26.73 -0.14 -0.93 16 5 C -0.12 -0.83 5.70 -26.73 -0.15 -0.98 16 6 C -0.11 -0.63 5.36 -26.73 -0.14 -0.77 16 7 C -0.11 -0.79 3.01 -91.77 -0.28 -1.07 16 8 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 9 C 0.52 5.09 5.64 -10.98 -0.06 5.03 16 10 O -0.54 -7.14 13.66 5.56 0.08 -7.06 16 11 N -0.73 -6.14 5.45 -60.30 -0.33 -6.47 16 12 C 0.13 1.22 5.53 -4.05 -0.02 1.19 16 13 C -0.13 -1.31 3.94 -89.69 -0.35 -1.66 16 14 C 0.02 0.21 7.51 -2.77 -0.02 0.19 16 15 N -0.45 -7.26 5.65 -239.72 -1.35 -8.61 16 16 C 0.01 0.17 5.28 -4.97 -0.03 0.15 16 17 C 0.45 10.74 7.83 -10.98 -0.09 10.66 16 18 O -0.58 -15.99 16.01 5.55 0.09 -15.90 16 19 N -0.57 -14.60 5.29 -10.96 -0.06 -14.66 16 20 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 21 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.80 13.05 55.50 0.72 -24.07 16 24 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 C 0.01 0.10 7.52 -2.76 -0.02 0.08 16 29 C -0.09 -0.71 4.37 -26.73 -0.12 -0.82 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.52 7.22 -51.93 -0.37 0.15 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.33 7.56 -51.93 -0.39 -0.07 16 39 H 0.40 2.59 7.89 -40.82 -0.32 2.27 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.74 7.83 -51.93 -0.41 0.34 16 42 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.07 0.92 7.22 -51.93 -0.38 0.55 16 44 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.09 1.42 8.08 -51.93 -0.42 1.00 16 46 H 0.06 0.92 7.38 -51.93 -0.38 0.54 16 47 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 48 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 50 H 0.07 0.74 7.88 -51.93 -0.41 0.33 16 51 H 0.07 0.61 8.10 -51.93 -0.42 0.18 16 52 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 407.54 15.07 6.14 6.14 Total: -1.00 -33.65 407.54 -10.39 -44.04 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -9.12 Total: 9.26 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -1.54 Total: 1.12 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: -1.02 Total: -53.81 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: 0.16 Total: -22.97 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.65 -10.39 -44.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713916455.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.785 kcal (2) G-P(sol) polarization free energy of solvation -33.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds