Wall clock time and date at job start Tue Mar 31 2020 22:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 115.55930 * 2 1 4 4 C 1.52995 * 117.49879 * 145.69399 * 2 1 3 5 5 C 1.53001 * 117.49807 * 214.31902 * 2 1 3 6 6 H 1.09000 * 117.51924 * 359.97438 * 5 2 1 7 7 C 1.50697 * 117.49669 * 145.02008 * 5 2 1 8 8 O 1.21279 * 120.00555 * 0.02562 * 7 5 2 9 9 N 1.34782 * 119.99623 * 180.02562 * 7 5 2 10 10 C 1.46497 * 119.99938 * 179.97438 * 9 7 5 11 11 C 1.52998 * 109.47289 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47120 * 179.97438 * 11 10 9 13 13 C 1.53003 * 109.46921 * 180.02562 * 12 11 10 14 14 H 1.09008 * 110.33236 * 302.74790 * 13 12 11 15 15 C 1.55380 * 110.44251 * 180.46982 * 13 12 11 16 16 C 1.55142 * 101.43737 * 204.06420 * 15 13 12 17 17 C 1.54312 * 103.17714 * 35.64527 * 16 15 13 18 18 N 1.47443 * 107.23612 * 337.62814 * 17 16 15 19 19 C 1.46900 * 111.00227 * 236.74273 * 18 17 16 20 20 C 1.50699 * 109.47247 * 290.12346 * 19 18 17 21 21 O 1.21293 * 119.99699 * 359.97438 * 20 19 18 22 22 N 1.34772 * 120.00395 * 179.97438 * 20 19 18 23 23 C 1.37090 * 120.00542 * 179.97438 * 22 20 19 24 24 H 1.08009 * 119.99881 * 0.02562 * 23 22 20 25 25 C 1.38954 * 120.00423 * 180.02562 * 23 22 20 26 26 N 1.31410 * 119.99704 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 119.99915 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47328 * 0.02562 * 27 25 23 29 29 H 1.48505 * 109.47111 * 120.00180 * 27 25 23 30 30 H 1.48505 * 109.46945 * 239.99746 * 27 25 23 31 31 H 1.09007 * 109.47107 * 205.68277 * 1 2 3 32 32 H 1.08997 * 109.47259 * 325.68498 * 1 2 3 33 33 H 1.09003 * 109.47290 * 85.68895 * 1 2 3 34 34 H 1.09000 * 117.50421 * 0.02562 * 4 2 1 35 35 H 1.08999 * 117.49894 * 214.97286 * 4 2 1 36 36 H 0.96998 * 120.00389 * 359.97438 * 9 7 5 37 37 H 1.09004 * 109.47138 * 59.99997 * 10 9 7 38 38 H 1.08999 * 109.47519 * 299.99894 * 10 9 7 39 39 H 1.09004 * 109.47128 * 60.00510 * 11 10 9 40 40 H 1.08996 * 109.47374 * 300.00178 * 11 10 9 41 41 H 1.09004 * 109.47075 * 60.00425 * 12 11 10 42 42 H 1.08996 * 109.47291 * 300.00411 * 12 11 10 43 43 H 1.09003 * 111.17446 * 86.01249 * 15 13 12 44 44 H 1.08996 * 111.00619 * 322.04920 * 15 13 12 45 45 H 1.09002 * 110.70816 * 277.17375 * 16 15 13 46 46 H 1.09005 * 110.70106 * 154.11515 * 16 15 13 47 47 H 1.08997 * 109.89327 * 97.03090 * 17 16 15 48 48 H 1.09001 * 109.89155 * 218.05905 * 17 16 15 49 49 H 1.08998 * 109.46669 * 50.12444 * 19 18 17 50 50 H 1.08999 * 109.47032 * 170.11876 * 19 18 17 51 51 H 0.97003 * 119.99334 * 0.02562 * 22 20 19 52 52 H 0.96997 * 119.99797 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 0.7649 5 6 2.2365 -1.1209 -0.7652 6 1 1.6115 -1.8587 -1.2683 7 6 3.5292 -0.7809 -1.4609 8 8 3.9720 0.3466 -1.4008 9 7 4.1934 -1.7299 -2.1501 10 6 5.4499 -1.3993 -2.8269 11 6 5.9941 -2.6450 -3.5289 12 6 7.3061 -2.2995 -4.2364 13 6 7.8500 -3.5452 -4.9389 14 1 7.9891 -4.3542 -4.2216 15 6 9.1901 -3.2222 -5.6559 16 6 9.2242 -4.3187 -6.7529 17 6 7.7402 -4.4651 -7.1501 18 7 6.9344 -3.9676 -6.0200 19 6 5.9999 -4.9972 -5.5462 20 6 4.9239 -5.2128 -6.5791 21 8 4.9343 -4.5714 -7.6084 22 7 3.9502 -6.1182 -6.3591 23 6 2.9711 -6.3140 -7.2984 24 1 2.9803 -5.7428 -8.2151 25 6 1.9669 -7.2471 -7.0713 26 7 1.9555 -7.9417 -5.9558 27 14 0.6332 -7.5142 -8.3517 28 1 0.8714 -6.6154 -9.5095 29 1 0.6613 -8.9270 -8.8084 30 1 -0.6930 -7.2132 -7.7552 31 1 -0.3634 -0.9262 0.4454 32 1 -0.3633 0.8488 0.5793 33 1 -0.3634 0.0773 -1.0248 34 1 1.6113 -1.8588 1.2678 35 1 3.1716 -0.8753 1.2681 36 1 3.8395 -2.6317 -2.1979 37 1 6.1764 -1.0493 -2.0936 38 1 5.2707 -0.6159 -3.5634 39 1 5.2678 -2.9954 -4.2622 40 1 6.1734 -3.4281 -2.7922 41 1 8.0327 -1.9489 -3.5034 42 1 7.1264 -1.5166 -4.9731 43 1 10.0354 -3.3245 -4.9753 44 1 9.1660 -2.2268 -6.0993 45 1 9.6094 -5.2553 -6.3499 46 1 9.8209 -3.9929 -7.6049 47 1 7.5346 -3.8722 -8.0413 48 1 7.5089 -5.5131 -7.3406 49 1 6.5395 -5.9302 -5.3834 50 1 5.5454 -4.6724 -4.6103 51 1 3.9418 -6.6309 -5.5356 52 1 1.2547 -8.5933 -5.7975 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714525230.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:09 Heat of formation + Delta-G solvation = -59.914704 kcal Electronic energy + Delta-G solvation = -29392.322929 eV Core-core repulsion = 25391.792714 eV Total energy + Delta-G solvation = -4000.530215 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.09495 -39.45364 -37.63597 -37.14001 -35.55053 -33.93411 -33.00930 -31.89806 -31.12314 -29.46946 -28.62072 -26.71355 -25.59522 -24.30239 -23.42049 -21.85952 -21.08661 -20.88958 -20.13302 -19.69546 -19.07896 -17.85685 -17.48422 -16.52496 -16.12400 -15.72209 -15.57237 -15.26947 -14.74667 -14.57528 -14.47763 -14.04877 -13.97420 -13.80033 -13.46597 -13.33611 -13.03363 -12.93851 -12.78778 -12.42581 -12.25132 -12.17782 -12.09868 -11.92956 -11.64790 -11.54248 -11.22800 -11.11356 -11.04620 -10.93363 -10.66355 -10.59898 -10.56211 -10.37068 -10.34844 -10.30089 -10.22682 -9.83905 -9.50774 -9.11449 -8.42320 -7.96471 -7.85771 -6.42329 -3.82680 2.41525 3.05564 3.15352 3.26026 3.33302 3.61409 3.91591 4.01534 4.24543 4.45897 4.53882 4.58490 4.61464 4.67153 4.92772 4.97953 5.02078 5.06515 5.08474 5.18347 5.24992 5.27718 5.39063 5.40284 5.47336 5.52748 5.56081 5.57605 5.61537 5.71634 5.73129 5.77734 5.81276 5.84387 5.87415 5.88313 5.96641 6.08242 6.10821 6.18097 6.29623 6.31249 6.36505 6.41750 6.52218 7.31773 7.35322 7.44302 7.54936 8.06770 8.16554 8.62337 9.18758 9.54910 10.07463 10.75639 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.006191 B = 0.003428 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4521.290311 B = 8165.418757 C =12146.747851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.122 4.122 3 H 0.116 0.884 4 C -0.149 4.149 5 C -0.193 4.193 6 H 0.126 0.874 7 C 0.543 3.457 8 O -0.547 6.547 9 N -0.724 5.724 10 C 0.121 3.879 11 C -0.138 4.138 12 C -0.095 4.095 13 C 0.070 3.930 14 H 0.052 0.948 15 C -0.122 4.122 16 C -0.146 4.146 17 C 0.058 3.942 18 N -0.499 5.499 19 C 0.034 3.966 20 C 0.444 3.556 21 O -0.574 6.574 22 N -0.568 5.568 23 C -0.296 4.296 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.903 5.903 27 Si 0.927 3.073 28 H -0.268 1.268 29 H -0.282 1.282 30 H -0.282 1.282 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.404 0.596 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.071 0.929 47 H 0.081 0.919 48 H 0.052 0.948 49 H 0.046 0.954 50 H 0.091 0.909 51 H 0.391 0.609 52 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.261 8.668 12.729 17.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.140 4.140 3 H 0.134 0.866 4 C -0.187 4.187 5 C -0.214 4.214 6 H 0.144 0.856 7 C 0.329 3.671 8 O -0.425 6.425 9 N -0.375 5.375 10 C -0.002 4.002 11 C -0.176 4.176 12 C -0.134 4.134 13 C -0.039 4.039 14 H 0.070 0.930 15 C -0.160 4.160 16 C -0.184 4.184 17 C -0.070 4.070 18 N -0.224 5.224 19 C -0.097 4.097 20 C 0.229 3.771 21 O -0.458 6.458 22 N -0.205 5.205 23 C -0.426 4.426 24 H 0.120 0.880 25 C -0.179 4.179 26 N -0.545 5.545 27 Si 0.754 3.246 28 H -0.192 1.192 29 H -0.208 1.208 30 H -0.208 1.208 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.238 0.762 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.099 0.901 48 H 0.071 0.929 49 H 0.064 0.936 50 H 0.109 0.891 51 H 0.224 0.776 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.158 10.187 11.941 17.251 hybrid contribution -0.454 -1.952 0.075 2.005 sum 6.704 8.235 12.016 16.036 Atomic orbital electron populations 1.21414 0.92188 1.02203 1.02384 1.22364 0.95272 0.94998 1.01396 0.86580 1.23097 1.03072 1.01623 0.90868 1.22344 0.97866 1.05470 0.95747 0.85644 1.19657 0.84583 0.84612 0.78215 1.90676 1.68760 1.21128 1.61917 1.45979 1.24892 1.13673 1.52971 1.21392 0.84697 0.98103 0.95990 1.21977 0.98998 0.96768 0.99839 1.21397 0.95483 0.97771 0.98755 1.22688 0.91378 0.96702 0.93116 0.92998 1.22774 0.96251 0.99591 0.97370 1.22857 0.97935 0.98654 0.98995 1.22677 0.89496 0.99728 0.95069 1.63139 1.16225 1.37119 1.05875 1.22247 0.94985 0.93735 0.98747 1.19784 0.84572 0.83831 0.88872 1.90527 1.76961 1.49724 1.28543 1.41868 1.23464 1.35111 1.20081 1.19734 1.02575 1.19966 1.00288 0.87963 1.25226 0.98909 0.96334 0.97461 1.69614 1.34931 1.25324 1.24649 0.85835 0.80150 0.78135 0.80454 1.19245 1.20812 1.20771 0.92263 0.91733 0.91790 0.87734 0.88401 0.76155 0.91856 0.91369 0.89501 0.91765 0.91783 0.90686 0.91207 0.90541 0.91941 0.91020 0.90102 0.92907 0.93639 0.89119 0.77649 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 10.19 37.16 0.38 -0.58 16 2 C -0.12 -1.16 5.92 -90.62 -0.54 -1.70 16 3 H 0.12 1.27 7.67 -51.93 -0.40 0.87 16 4 C -0.15 -1.27 9.88 -26.73 -0.26 -1.53 16 5 C -0.19 -1.98 5.91 -91.77 -0.54 -2.52 16 6 H 0.13 1.14 8.14 -51.93 -0.42 0.72 16 7 C 0.54 7.09 7.61 -10.98 -0.08 7.01 16 8 O -0.55 -9.04 16.26 5.56 0.09 -8.95 16 9 N -0.72 -8.38 5.56 -60.30 -0.33 -8.71 16 10 C 0.12 1.42 5.67 -4.04 -0.02 1.39 16 11 C -0.14 -1.54 4.13 -26.73 -0.11 -1.65 16 12 C -0.10 -1.04 4.96 -26.73 -0.13 -1.17 16 13 C 0.07 0.84 2.59 -65.93 -0.17 0.67 16 14 H 0.05 0.60 7.81 -51.92 -0.41 0.19 16 15 C -0.12 -1.29 6.54 -24.33 -0.16 -1.44 16 16 C -0.15 -1.70 6.93 -24.91 -0.17 -1.87 16 17 C 0.06 0.91 5.64 -2.84 -0.02 0.90 16 18 N -0.50 -7.94 4.32 -224.51 -0.97 -8.91 16 19 C 0.03 0.59 4.54 -4.98 -0.02 0.57 16 20 C 0.44 10.25 7.43 -10.99 -0.08 10.16 16 21 O -0.57 -15.35 15.12 5.55 0.08 -15.27 16 22 N -0.57 -14.06 5.29 -10.96 -0.06 -14.12 16 23 C -0.30 -8.14 9.68 -14.94 -0.14 -8.28 16 24 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 26 N -0.90 -24.13 13.05 55.50 0.72 -23.41 16 27 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 28 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 29 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 30 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 31 H 0.06 0.40 7.90 -51.92 -0.41 -0.01 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.10 0.71 8.05 -51.93 -0.42 0.29 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.40 3.98 8.47 -40.82 -0.35 3.63 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.09 1.20 5.99 -51.93 -0.31 0.89 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 48 H 0.05 0.91 7.32 -51.93 -0.38 0.53 16 49 H 0.05 0.73 7.96 -51.93 -0.41 0.32 16 50 H 0.09 1.38 5.27 -51.93 -0.27 1.11 16 51 H 0.39 9.22 7.90 -40.82 -0.32 8.90 16 52 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 417.31 15.07 6.29 6.29 Total: -1.00 -32.84 417.31 -10.48 -43.32 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -9.10 Total: 13.48 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -2.18 Total: 0.43 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.64 Total: -55.15 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: 0.17 Total: -24.22 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -32.84 -10.48 -43.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714525230.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.595 kcal (2) G-P(sol) polarization free energy of solvation -32.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds