Wall clock time and date at job start Tue Mar 31 2020 20:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21278 * 120.00007 * 2 1 4 4 N 1.34776 * 119.99727 * 180.02562 * 2 1 3 5 5 C 1.47579 * 134.49297 * 179.97438 * 4 2 1 6 6 C 1.53939 * 86.11619 * 155.35973 * 5 4 2 7 7 C 1.50707 * 113.74190 * 137.95423 * 6 5 4 8 8 O 1.21284 * 119.99736 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00105 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00041 * 181.92347 * 9 7 6 11 11 C 1.52999 * 109.46927 * 47.01731 * 10 9 7 12 12 N 1.46500 * 109.47498 * 54.14629 * 11 10 9 13 13 C 1.36937 * 120.00209 * 177.73686 * 12 11 10 14 14 H 1.07999 * 119.99827 * 359.97438 * 13 12 11 15 15 C 1.38814 * 119.99723 * 180.02562 * 13 12 11 16 16 N 1.31610 * 120.00210 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99725 * 180.02562 * 15 13 12 18 18 H 1.48490 * 109.47365 * 89.99747 * 17 15 13 19 19 H 1.48501 * 109.46875 * 210.00059 * 17 15 13 20 20 H 1.48500 * 109.46725 * 329.99517 * 17 15 13 21 21 C 1.52998 * 109.47143 * 167.01607 * 10 9 7 22 22 C 1.52999 * 109.47108 * 60.00234 * 21 10 9 23 23 C 1.52991 * 109.47321 * 59.99881 * 22 21 10 24 24 C 1.52998 * 109.47127 * 300.00107 * 23 22 21 25 25 C 1.52999 * 109.47265 * 60.00122 * 24 23 22 26 26 H 1.08996 * 109.47088 * 60.00005 * 25 24 23 27 27 C 1.52998 * 109.47265 * 179.97438 * 25 24 23 28 28 C 1.47580 * 134.49275 * 359.97438 * 4 2 1 29 29 H 1.09001 * 109.47290 * 240.00188 * 1 2 3 30 30 H 1.09009 * 109.46681 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.47511 * 119.99751 * 1 2 3 32 32 H 1.09000 * 113.76797 * 41.05862 * 5 4 2 33 33 H 1.08999 * 113.86858 * 269.67462 * 5 4 2 34 34 H 1.09005 * 113.74287 * 269.15572 * 6 5 4 35 35 H 0.96999 * 120.00125 * 1.92257 * 9 7 6 36 36 H 1.09004 * 109.46886 * 174.14560 * 11 10 9 37 37 H 1.09006 * 109.47063 * 294.14464 * 11 10 9 38 38 H 0.97003 * 119.99622 * 357.74114 * 12 11 10 39 39 H 0.97000 * 120.00131 * 180.02562 * 16 15 13 40 40 H 1.08996 * 109.47129 * 300.00035 * 21 10 9 41 41 H 1.09004 * 109.47301 * 180.02562 * 21 10 9 42 42 H 1.09003 * 109.46901 * 179.97438 * 22 21 10 43 43 H 1.08996 * 109.46872 * 299.99767 * 22 21 10 44 44 H 1.09002 * 109.47652 * 59.99959 * 23 22 21 45 45 H 1.09005 * 109.47465 * 179.97438 * 23 22 21 46 46 H 1.09005 * 109.47184 * 179.97438 * 24 23 22 47 47 H 1.09004 * 109.47301 * 299.99928 * 24 23 22 48 48 H 1.09002 * 109.46999 * 52.18346 * 27 25 24 49 49 H 1.09001 * 109.47302 * 172.18081 * 27 25 24 50 50 H 1.08994 * 109.47391 * 292.18083 * 27 25 24 51 51 H 1.08998 * 113.77059 * 90.33509 * 28 4 2 52 52 H 1.08998 * 113.77118 * 318.94064 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6097 -1.5366 -0.0012 6 6 3.1595 -2.8622 0.6390 7 6 3.8592 -4.0744 0.0801 8 8 4.6903 -3.9456 -0.7938 9 7 3.5612 -5.3014 0.5512 10 6 4.2713 -6.4755 0.0377 11 6 5.7748 -6.1933 0.0167 12 7 6.2099 -5.7638 1.3480 13 6 7.5325 -5.4986 1.5838 14 1 8.2550 -5.6065 0.7883 15 6 7.9447 -5.0922 2.8455 16 7 7.0643 -4.9612 3.8149 17 14 9.7488 -4.7297 3.1669 18 1 10.0233 -3.2973 2.8880 19 1 10.0683 -5.0279 4.5861 20 1 10.5889 -5.5762 2.2820 21 6 3.9905 -7.6772 0.9422 22 6 2.4870 -7.9594 0.9633 23 6 2.0057 -8.2661 -0.4562 24 6 2.2864 -7.0644 -1.3607 25 6 3.7900 -6.7822 -1.3818 26 1 4.3182 -7.6557 -1.7638 27 6 4.0708 -5.5809 -2.2868 28 6 1.7862 -2.5893 -0.0007 29 1 -0.3634 -0.5138 0.8900 30 1 -0.3633 1.0278 0.0005 31 1 -0.3634 -0.5138 -0.8900 32 1 4.2235 -0.9185 0.6540 33 1 4.0349 -1.6523 -0.9981 34 1 3.1497 -2.8422 1.7289 35 1 2.8767 -5.4072 1.2302 36 1 6.3107 -7.0995 -0.2659 37 1 5.9866 -5.4056 -0.7064 38 1 5.5610 -5.6673 2.0626 39 1 7.3522 -4.6769 4.6965 40 1 4.3334 -7.4587 1.9535 41 1 4.5192 -8.5507 0.5605 42 1 2.2870 -8.8158 1.6073 43 1 1.9587 -7.0859 1.3453 44 1 2.5339 -9.1396 -0.8383 45 1 0.9345 -8.4676 -0.4412 46 1 1.9439 -7.2831 -2.3722 47 1 1.7581 -6.1908 -0.9787 48 1 3.4369 -4.7457 -1.9890 49 1 5.1181 -5.2933 -2.1943 50 1 3.8574 -5.8480 -3.3218 51 1 1.6740 -3.0140 -0.9982 52 1 0.9442 -2.8117 0.6548 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715125185.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:01 Heat of formation + Delta-G solvation = -40.937387 kcal Electronic energy + Delta-G solvation = -31967.420955 eV Core-core repulsion = 27967.713658 eV Total energy + Delta-G solvation = -3999.707296 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.23661 -41.05251 -39.29747 -38.00110 -36.32967 -34.55443 -33.58495 -33.00629 -32.08894 -30.88273 -29.36574 -27.68454 -27.13927 -26.44470 -24.83710 -24.55178 -22.34022 -21.66079 -21.19719 -20.05214 -19.91343 -19.11809 -18.62919 -17.95717 -17.25936 -16.77618 -16.54586 -16.46468 -16.07752 -15.69982 -15.35794 -15.22842 -14.82067 -14.77970 -14.75560 -14.22882 -14.01559 -13.93062 -13.70391 -13.49225 -13.39633 -13.28001 -13.05518 -12.95481 -12.88373 -12.76682 -12.68152 -12.60111 -12.41656 -12.27820 -12.08094 -11.93979 -11.81343 -11.71483 -11.25567 -11.08901 -11.00315 -10.92315 -10.65915 -10.25507 -9.78624 -9.56552 -8.82318 -7.92701 -5.15575 1.43417 1.45469 1.52534 1.55342 1.72303 1.84729 2.44739 2.57233 3.25879 3.41156 3.49968 3.76449 3.83608 3.89874 3.94597 4.04577 4.18725 4.24825 4.27821 4.34407 4.43611 4.46835 4.51341 4.58329 4.61435 4.64148 4.66609 4.68729 4.76473 4.78610 4.85545 4.98484 5.00820 5.05373 5.10665 5.11740 5.22737 5.29539 5.32206 5.35082 5.44657 5.47060 5.50092 5.57055 5.64411 5.83224 5.88562 6.31390 6.65174 6.84961 7.06257 7.38860 7.56452 8.17147 8.44485 9.30287 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007977 B = 0.004769 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3509.261785 B = 5870.110366 C = 8372.857286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.520 3.480 3 O -0.610 6.610 4 N -0.645 5.645 5 C 0.117 3.883 6 C -0.142 4.142 7 C 0.523 3.477 8 O -0.544 6.544 9 N -0.696 5.696 10 C 0.190 3.810 11 C 0.131 3.869 12 N -0.725 5.725 13 C -0.234 4.234 14 H 0.059 0.941 15 C -0.068 4.068 16 N -0.962 5.962 17 Si 0.960 3.040 18 H -0.295 1.295 19 H -0.292 1.292 20 H -0.275 1.275 21 C -0.115 4.115 22 C -0.112 4.112 23 C -0.114 4.114 24 C -0.102 4.102 25 C -0.087 4.087 26 H 0.067 0.933 27 C -0.131 4.131 28 C 0.138 3.862 29 H 0.115 0.885 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.128 0.872 35 H 0.408 0.592 36 H 0.003 0.997 37 H 0.046 0.954 38 H 0.377 0.623 39 H 0.249 0.751 40 H 0.049 0.951 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.081 0.919 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.059 0.941 49 H 0.045 0.955 50 H 0.039 0.961 51 H 0.105 0.895 52 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.343 -4.375 -8.861 24.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.313 3.687 3 O -0.492 6.492 4 N -0.380 5.380 5 C -0.007 4.007 6 C -0.164 4.164 7 C 0.309 3.691 8 O -0.422 6.422 9 N -0.348 5.348 10 C 0.104 3.896 11 C 0.004 3.996 12 N -0.368 5.368 13 C -0.367 4.367 14 H 0.077 0.923 15 C -0.260 4.260 16 N -0.614 5.614 17 Si 0.790 3.210 18 H -0.222 1.222 19 H -0.218 1.218 20 H -0.200 1.200 21 C -0.153 4.153 22 C -0.149 4.149 23 C -0.151 4.151 24 C -0.139 4.139 25 C -0.107 4.107 26 H 0.085 0.915 27 C -0.188 4.188 28 C 0.017 3.983 29 H 0.133 0.867 30 H 0.109 0.891 31 H 0.131 0.869 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.146 0.854 35 H 0.245 0.755 36 H 0.021 0.979 37 H 0.064 0.936 38 H 0.210 0.790 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.076 0.924 45 H 0.100 0.900 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.077 0.923 49 H 0.064 0.936 50 H 0.058 0.942 51 H 0.123 0.877 52 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -21.382 -3.561 -9.535 23.681 hybrid contribution 1.699 0.445 1.014 2.028 sum -19.683 -3.116 -8.521 21.673 Atomic orbital electron populations 1.21883 0.86709 1.06159 1.06633 1.21572 0.92304 0.80868 0.73920 1.90706 1.72517 1.32702 1.53292 1.50150 1.08485 1.06676 1.72701 1.22932 0.84223 0.92348 1.01159 1.23260 0.98207 0.91983 1.02905 1.20134 0.82637 0.84573 0.81742 1.90731 1.33753 1.86069 1.31669 1.45733 1.40756 1.05216 1.43136 1.20391 0.89768 0.85254 0.94182 1.21405 0.93356 0.96717 0.88168 1.42230 1.05182 1.81108 1.08281 1.19491 0.86589 1.35834 0.94760 0.92283 1.25282 1.00890 1.03723 0.96123 1.69749 1.33696 1.55839 1.02068 0.85333 0.81408 0.77519 0.76709 1.22229 1.21808 1.20038 1.21708 0.98426 0.96333 0.98863 1.21529 0.93216 1.02266 0.97903 1.21529 1.01639 0.97738 0.94240 1.21506 0.93355 0.98852 1.00187 1.21436 0.97986 0.98304 0.93019 0.91478 1.22163 1.02129 0.97199 0.97302 1.23318 0.95827 0.76720 1.02479 0.86680 0.89115 0.86896 0.92055 0.89442 0.85448 0.75513 0.97885 0.93595 0.78994 0.94220 0.93189 0.91516 0.91039 0.90748 0.92400 0.90013 0.91254 0.90951 0.92261 0.93632 0.94226 0.87703 0.84720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 10.07 71.24 0.72 -1.16 16 2 C 0.52 12.95 8.17 87.66 0.72 13.67 16 3 O -0.61 -22.33 17.81 -3.02 -0.05 -22.39 16 4 N -0.65 -14.58 3.61 -836.91 -3.02 -17.60 16 5 C 0.12 3.35 8.18 86.48 0.71 4.05 16 6 C -0.14 -3.25 4.34 -10.88 -0.05 -3.29 16 7 C 0.52 14.96 5.52 87.66 0.48 15.45 16 8 O -0.54 -19.86 9.24 -3.04 -0.03 -19.89 16 9 N -0.70 -17.36 3.53 -422.92 -1.49 -18.85 16 10 C 0.19 5.42 0.32 3.60 0.00 5.42 16 11 C 0.13 5.38 4.40 86.38 0.38 5.76 16 12 N -0.73 -36.32 5.04 -343.44 -1.73 -38.05 16 13 C -0.23 -13.49 9.99 84.03 0.84 -12.65 16 14 H 0.06 3.42 7.83 -2.91 -0.02 3.40 16 15 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 16 N -0.96 -58.04 13.06 21.65 0.28 -57.75 16 17 Si 0.96 47.78 29.55 68.60 2.03 49.81 16 18 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 19 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 20 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 21 C -0.12 -3.00 4.72 30.59 0.14 -2.85 16 22 C -0.11 -1.87 5.75 30.59 0.18 -1.70 16 23 C -0.11 -1.60 5.92 30.59 0.18 -1.42 16 24 C -0.10 -1.62 5.04 30.59 0.15 -1.46 16 25 C -0.09 -2.07 2.07 -10.79 -0.02 -2.09 16 26 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 27 C -0.13 -3.55 7.30 71.98 0.53 -3.02 16 28 C 0.14 1.90 8.17 86.48 0.71 2.61 16 29 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.09 1.16 8.12 -2.38 -0.02 1.14 16 31 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.09 2.72 7.41 -2.39 -0.02 2.70 16 34 H 0.13 2.89 8.14 -2.38 -0.02 2.87 16 35 H 0.41 7.83 6.98 -92.71 -0.65 7.18 16 36 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.05 2.12 4.22 -2.38 -0.01 2.11 16 38 H 0.38 19.26 6.58 -92.71 -0.61 18.65 16 39 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 40 H 0.05 1.61 7.29 -2.39 -0.02 1.60 16 41 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 42 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.07 1.03 6.63 -2.39 -0.02 1.01 16 44 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 46 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 47 H 0.07 1.02 7.60 -2.38 -0.02 1.00 16 48 H 0.06 1.57 5.50 -2.39 -0.01 1.55 16 49 H 0.04 1.59 5.06 -2.39 -0.01 1.57 16 50 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 51 H 0.10 1.23 8.09 -2.39 -0.02 1.21 16 52 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -80.44 394.10 1.79 -78.65 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: -0.33 Total: 32.25 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: 6.13 Total: 13.83 kcal Atomic # 7 Polarization: -126.30 SS G_CDS: -5.96 Total: -132.26 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -0.08 Total: -42.28 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.81 kcal Total: -80.44 1.79 -78.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715125185.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.713 kcal (2) G-P(sol) polarization free energy of solvation -80.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds