Wall clock time and date at job start Tue Mar 31 2020 22:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 115.55559 * 2 1 4 4 C 1.53003 * 117.51738 * 214.29892 * 2 1 3 5 5 C 1.53001 * 60.00013 * 252.51778 * 4 2 1 6 6 H 1.08993 * 117.52032 * 252.51481 * 5 4 2 7 7 C 1.50705 * 117.49526 * 107.48922 * 5 4 2 8 8 O 1.21285 * 120.00010 * 291.37680 * 7 5 4 9 9 N 1.34777 * 120.00334 * 111.37752 * 7 5 4 10 10 C 1.46495 * 120.00170 * 179.97438 * 9 7 5 11 11 C 1.52999 * 109.47144 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47359 * 180.02562 * 11 10 9 13 13 C 1.53114 * 109.52517 * 175.00073 * 12 11 10 14 14 C 1.53037 * 109.31211 * 177.54028 * 13 12 11 15 15 N 1.46854 * 109.52285 * 300.88400 * 14 13 12 16 16 C 1.46895 * 110.99648 * 185.80147 * 15 14 13 17 17 C 1.50706 * 109.47267 * 65.74718 * 16 15 14 18 18 O 1.21284 * 119.99642 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99793 * 179.97438 * 17 16 15 20 20 C 1.37097 * 119.99495 * 180.02562 * 19 17 16 21 21 H 1.07993 * 120.00374 * 359.97438 * 20 19 17 22 22 C 1.38958 * 119.99629 * 179.97438 * 20 19 17 23 23 N 1.31406 * 120.00046 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99793 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47321 * 90.00086 * 24 22 20 26 26 H 1.48502 * 109.47108 * 210.00121 * 24 22 20 27 27 H 1.48504 * 109.47261 * 329.99984 * 24 22 20 28 28 C 1.46840 * 111.23238 * 61.67711 * 15 14 13 29 29 C 1.53035 * 109.52994 * 298.28004 * 28 15 14 30 30 H 1.08999 * 109.47361 * 274.32962 * 1 2 3 31 31 H 1.09000 * 109.46819 * 34.32851 * 1 2 3 32 32 H 1.08996 * 109.46785 * 154.32280 * 1 2 3 33 33 H 1.09001 * 117.49744 * 145.03446 * 4 2 1 34 34 H 1.08998 * 117.50194 * 0.02562 * 4 2 1 35 35 H 0.97004 * 119.99420 * 0.02562 * 9 7 5 36 36 H 1.09007 * 109.46583 * 60.00391 * 10 9 7 37 37 H 1.09001 * 109.47493 * 300.00717 * 10 9 7 38 38 H 1.08994 * 109.47241 * 60.00407 * 11 10 9 39 39 H 1.09000 * 109.47161 * 300.00185 * 11 10 9 40 40 H 1.09007 * 109.57355 * 54.83651 * 12 11 10 41 41 H 1.09002 * 109.50377 * 297.50153 * 13 12 11 42 42 H 1.09003 * 109.50316 * 57.58148 * 13 12 11 43 43 H 1.09000 * 109.46159 * 60.85546 * 14 13 12 44 44 H 1.09000 * 109.46461 * 180.82902 * 14 13 12 45 45 H 1.09006 * 109.47095 * 185.74417 * 16 15 14 46 46 H 1.08994 * 109.47117 * 305.74495 * 16 15 14 47 47 H 0.96995 * 120.00333 * 359.97438 * 19 17 16 48 48 H 0.97001 * 119.99745 * 180.02562 * 23 22 20 49 49 H 1.09001 * 109.46294 * 178.26219 * 28 15 14 50 50 H 1.09003 * 109.45458 * 58.29272 * 28 15 14 51 51 H 1.09005 * 109.50290 * 299.24575 * 29 28 15 52 52 H 1.08998 * 109.54151 * 179.13613 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2369 -1.1210 -0.7646 5 6 2.2365 -1.1207 0.7654 6 1 3.1711 -0.8746 1.2692 7 6 1.3720 -2.1405 1.4610 8 8 0.1638 -2.0534 1.4011 9 7 1.9414 -3.1493 2.1499 10 6 1.1011 -4.1402 2.8266 11 6 1.9900 -5.1682 3.5293 12 6 1.1124 -6.2036 4.2355 13 6 1.9965 -7.3013 4.8336 14 6 1.1195 -8.3010 5.5908 15 7 0.3862 -7.6031 6.6547 16 6 -0.3604 -8.5533 7.4899 17 6 0.6077 -9.4373 8.2333 18 8 1.8020 -9.2898 8.0826 19 7 0.1461 -10.3909 9.0664 20 6 1.0268 -11.1947 9.7431 21 1 2.0903 -11.0640 9.6083 22 6 0.5510 -12.1775 10.6024 23 7 -0.7431 -12.3369 10.7661 24 14 1.7509 -13.2732 11.5239 25 1 2.0913 -12.6484 12.8272 26 1 1.1287 -14.6009 11.7590 27 1 2.9868 -13.4415 10.7179 28 6 -0.5050 -6.5760 6.1008 29 6 0.3242 -5.5250 5.3594 30 1 -0.3634 0.0776 1.0247 31 1 -0.3633 0.8487 -0.5795 32 1 -0.3633 -0.9262 -0.4453 33 1 3.1721 -0.8750 -1.2676 34 1 1.6120 -1.8585 -1.2683 35 1 2.9078 -3.2187 2.1982 36 1 0.4718 -4.6445 2.0931 37 1 0.4717 -3.6407 3.5631 38 1 2.6190 -4.6638 4.2627 39 1 2.6197 -5.6678 2.7930 40 1 0.4190 -6.6442 3.5191 41 1 2.5282 -7.8166 4.0336 42 1 2.7160 -6.8553 5.5203 43 1 0.4099 -8.7573 4.9006 44 1 1.7480 -9.0757 6.0301 45 1 -0.9739 -8.0047 8.2047 46 1 -1.0011 -9.1675 6.8573 47 1 -0.8091 -10.5081 9.1878 48 1 -1.0752 -13.0228 11.3663 49 1 -1.0564 -6.0984 6.9107 50 1 -1.2069 -7.0399 5.4077 51 1 1.0170 -5.0511 6.0548 52 1 -0.3384 -4.7707 4.9350 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715199966.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:26 Heat of formation + Delta-G solvation = -83.561591 kcal Electronic energy + Delta-G solvation = -28597.912720 eV Core-core repulsion = 24596.357100 eV Total energy + Delta-G solvation = -4001.555621 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.13900 -40.69245 -39.43306 -37.81825 -36.63072 -35.89348 -34.79937 -33.26825 -31.76690 -31.16528 -29.50178 -28.37415 -26.59470 -25.37652 -24.35784 -23.54880 -22.26765 -21.97418 -21.04244 -20.85636 -20.46436 -19.86346 -18.07772 -17.75460 -17.07856 -16.64281 -16.63401 -16.42062 -16.27957 -16.09960 -15.64322 -15.32896 -15.24975 -15.14171 -14.87176 -14.44954 -14.25819 -13.98701 -13.74615 -13.67540 -13.54245 -13.44015 -13.17510 -13.10112 -12.94252 -12.81475 -12.41441 -12.41249 -12.36568 -12.25314 -12.12756 -12.06994 -11.60058 -11.51236 -11.23777 -11.18782 -11.10817 -11.02479 -10.53684 -10.21731 -10.02919 -9.98737 -9.14997 -8.45859 -5.94519 1.38124 1.41540 1.53124 1.54321 2.06290 2.19741 2.28871 2.80515 2.87505 3.20949 3.40804 3.67004 3.74337 3.80804 3.85552 3.91820 3.95322 4.18132 4.22079 4.27266 4.30875 4.36029 4.44928 4.48973 4.51333 4.56140 4.57863 4.64603 4.69091 4.81121 4.83652 4.90825 4.93551 4.97980 5.01061 5.05669 5.07954 5.13080 5.19043 5.20175 5.30241 5.32604 5.41449 5.45995 5.55355 5.58311 5.92859 6.13601 6.31451 6.59711 6.61765 7.13771 7.30220 7.57443 8.13362 8.71632 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.043804 B = 0.001517 C = 0.001485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.056550 B =18448.372076 C =18855.266315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.128 4.128 3 H 0.133 0.867 4 C -0.140 4.140 5 C -0.198 4.198 6 H 0.149 0.851 7 C 0.531 3.469 8 O -0.577 6.577 9 N -0.718 5.718 10 C 0.123 3.877 11 C -0.111 4.111 12 C -0.078 4.078 13 C -0.098 4.098 14 C 0.052 3.948 15 N -0.533 5.533 16 C 0.057 3.943 17 C 0.442 3.558 18 O -0.612 6.612 19 N -0.575 5.575 20 C -0.333 4.333 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.922 5.922 24 Si 0.993 3.007 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.273 1.273 28 C 0.053 3.947 29 C -0.107 4.107 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.130 0.870 34 H 0.086 0.914 35 H 0.415 0.585 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.027 0.973 44 H 0.059 0.941 45 H 0.107 0.893 46 H 0.062 0.938 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.080 0.920 50 H 0.038 0.962 51 H 0.064 0.936 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.016 21.794 -21.787 31.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.147 4.147 3 H 0.151 0.849 4 C -0.177 4.177 5 C -0.219 4.219 6 H 0.167 0.833 7 C 0.319 3.681 8 O -0.457 6.457 9 N -0.369 5.369 10 C -0.001 4.001 11 C -0.148 4.148 12 C -0.097 4.097 13 C -0.136 4.136 14 C -0.075 4.075 15 N -0.258 5.258 16 C -0.075 4.075 17 C 0.229 3.771 18 O -0.498 6.498 19 N -0.213 5.213 20 C -0.462 4.462 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.563 5.563 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.197 1.197 28 C -0.075 4.075 29 C -0.145 4.145 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.148 0.852 34 H 0.104 0.896 35 H 0.251 0.749 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.045 0.955 44 H 0.077 0.923 45 H 0.125 0.875 46 H 0.080 0.920 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.098 0.902 50 H 0.056 0.944 51 H 0.083 0.917 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.177 22.029 -21.506 31.068 hybrid contribution -0.408 -1.532 0.576 1.686 sum 3.769 20.498 -20.930 29.537 Atomic orbital electron populations 1.21270 0.93185 1.00898 1.01220 1.22480 0.95450 0.94851 1.01904 0.84945 1.23151 1.03728 1.00807 0.90019 1.22389 1.02565 1.00496 0.96443 0.83291 1.20257 0.87996 0.81717 0.78129 1.90706 1.16487 1.75797 1.62753 1.45952 1.11302 1.27116 1.52563 1.21340 0.93637 0.89401 0.95706 1.21685 0.97814 0.95562 0.99784 1.21080 0.96969 0.95122 0.96537 1.21507 0.97499 0.95918 0.98651 1.22159 0.96839 0.97042 0.91506 1.61489 1.28011 1.14138 1.22195 1.21718 0.94067 0.94436 0.97249 1.20758 0.89851 0.83213 0.83242 1.90450 1.18309 1.72842 1.68207 1.41945 1.09445 1.30485 1.39425 1.19667 0.91054 1.12957 1.22538 0.90279 1.26035 0.98282 0.98884 0.98074 1.69676 1.13253 1.35042 1.38289 0.84926 0.77734 0.77406 0.78255 1.19674 1.19571 1.19742 1.22217 0.93970 0.92901 0.98373 1.21670 0.98966 0.96937 0.96881 0.93555 0.91900 0.93872 0.85152 0.89570 0.74861 0.92602 0.92187 0.90502 0.89903 0.90868 0.90487 0.92330 0.95456 0.92265 0.87477 0.91996 0.77126 0.91356 0.90164 0.94406 0.91726 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.79 8.43 71.98 0.61 -1.18 16 2 C -0.13 -1.46 6.41 -10.79 -0.07 -1.53 16 3 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 4 C -0.14 -1.26 9.88 30.60 0.30 -0.96 16 5 C -0.20 -2.17 6.19 -11.54 -0.07 -2.24 16 6 H 0.15 0.81 8.14 -2.39 -0.02 0.79 16 7 C 0.53 9.38 7.59 87.66 0.67 10.05 16 8 O -0.58 -14.94 13.10 -3.05 -0.04 -14.98 16 9 N -0.72 -9.57 5.56 -463.05 -2.57 -12.14 16 10 C 0.12 1.90 5.44 86.38 0.47 2.37 16 11 C -0.11 -1.50 4.80 30.59 0.15 -1.36 16 12 C -0.08 -1.45 2.25 -10.71 -0.02 -1.48 16 13 C -0.10 -2.41 5.38 30.64 0.16 -2.24 16 14 C 0.05 1.70 5.11 86.32 0.44 2.14 16 15 N -0.53 -17.64 4.40 -900.93 -3.96 -21.60 16 16 C 0.06 2.04 5.45 85.56 0.47 2.51 16 17 C 0.44 21.46 7.46 87.66 0.65 22.11 16 18 O -0.61 -34.05 13.90 -3.04 -0.04 -34.09 16 19 N -0.58 -30.06 5.29 -306.98 -1.62 -31.68 16 20 C -0.33 -19.10 9.68 84.04 0.81 -18.28 16 21 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 22 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 23 N -0.92 -50.24 13.05 21.66 0.28 -49.96 16 24 Si 0.99 43.26 29.55 68.60 2.03 45.28 16 25 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 27 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 28 C 0.05 1.29 5.46 86.33 0.47 1.76 16 29 C -0.11 -2.17 5.08 30.65 0.16 -2.01 16 30 H 0.05 0.95 7.26 -2.39 -0.02 0.94 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.04 0.87 7.01 -2.39 -0.02 0.85 16 33 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.09 1.03 8.05 -2.39 -0.02 1.01 16 35 H 0.41 3.08 8.47 -92.71 -0.79 2.29 16 36 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.06 1.08 6.64 -2.39 -0.02 1.06 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.07 1.33 8.14 -2.38 -0.02 1.32 16 41 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.06 2.46 5.78 -2.39 -0.01 2.44 16 45 H 0.11 3.43 7.99 -2.38 -0.02 3.42 16 46 H 0.06 2.04 8.12 -2.39 -0.02 2.02 16 47 H 0.40 19.67 7.90 -92.71 -0.73 18.94 16 48 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 49 H 0.08 1.85 8.02 -2.39 -0.02 1.83 16 50 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 52 H 0.08 1.42 6.70 -2.39 -0.02 1.40 16 Total: -1.00 -73.46 409.51 -0.87 -74.32 By element: Atomic # 1 Polarization: 36.02 SS G_CDS: -0.60 Total: 35.42 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 5.66 Total: 9.42 kcal Atomic # 7 Polarization: -107.50 SS G_CDS: -7.87 Total: -115.37 kcal Atomic # 8 Polarization: -48.99 SS G_CDS: -0.08 Total: -49.07 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -73.46 -0.87 -74.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715199966.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.238 kcal (2) G-P(sol) polarization free energy of solvation -73.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds