Wall clock time and date at job start Tue Mar 31 2020 22:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 115.56367 * 2 1 4 4 C 1.53075 * 117.49212 * 214.29019 * 2 1 3 5 5 C 1.52992 * 59.98535 * 252.51225 * 4 2 1 6 6 H 1.09000 * 117.49922 * 107.50021 * 5 4 2 7 7 C 1.50698 * 117.50153 * 252.49869 * 5 4 2 8 8 O 1.21278 * 119.99790 * 68.74189 * 7 5 4 9 9 N 1.34774 * 120.00079 * 248.75113 * 7 5 4 10 10 C 1.46507 * 120.00085 * 179.97438 * 9 7 5 11 11 C 1.52997 * 109.47024 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46811 * 179.97438 * 11 10 9 13 13 C 1.53117 * 109.52114 * 175.00159 * 12 11 10 14 14 C 1.53044 * 109.27792 * 177.56078 * 13 12 11 15 15 N 1.46847 * 109.51335 * 300.82256 * 14 13 12 16 16 C 1.46901 * 111.00144 * 185.83239 * 15 14 13 17 17 C 1.50696 * 109.47104 * 170.00196 * 16 15 14 18 18 O 1.21289 * 120.00306 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99947 * 180.02562 * 17 16 15 20 20 C 1.37095 * 120.00107 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00301 * 359.97438 * 20 19 17 22 22 C 1.38953 * 120.00397 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00617 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99707 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47039 * 89.99803 * 24 22 20 26 26 H 1.48495 * 109.47253 * 210.00137 * 24 22 20 27 27 H 1.48508 * 109.47191 * 329.99910 * 24 22 20 28 28 C 1.46830 * 111.21086 * 61.74856 * 15 14 13 29 29 C 1.53038 * 109.51757 * 298.25173 * 28 15 14 30 30 H 1.09008 * 109.46985 * 274.31400 * 1 2 3 31 31 H 1.08996 * 109.47265 * 34.30909 * 1 2 3 32 32 H 1.09000 * 109.47442 * 154.31623 * 1 2 3 33 33 H 1.08998 * 117.51726 * 145.03206 * 4 2 1 34 34 H 1.09007 * 117.51156 * 359.97438 * 4 2 1 35 35 H 0.96999 * 120.00526 * 359.97438 * 9 7 5 36 36 H 1.09000 * 109.46959 * 59.99441 * 10 9 7 37 37 H 1.08997 * 109.46901 * 299.99725 * 10 9 7 38 38 H 1.09000 * 109.47414 * 60.00081 * 11 10 9 39 39 H 1.08997 * 109.47353 * 299.99811 * 11 10 9 40 40 H 1.09004 * 109.57952 * 54.84028 * 12 11 10 41 41 H 1.09001 * 109.50874 * 57.62258 * 13 12 11 42 42 H 1.09000 * 109.50461 * 297.49779 * 13 12 11 43 43 H 1.09002 * 109.46396 * 60.83566 * 14 13 12 44 44 H 1.08994 * 109.46485 * 180.81491 * 14 13 12 45 45 H 1.09001 * 109.46985 * 290.00439 * 16 15 14 46 46 H 1.09002 * 109.46593 * 50.00429 * 16 15 14 47 47 H 0.97001 * 120.00418 * 359.97438 * 19 17 16 48 48 H 0.97000 * 120.00380 * 180.02562 * 23 22 20 49 49 H 1.08995 * 109.46742 * 178.23410 * 28 15 14 50 50 H 1.09004 * 109.45381 * 58.25744 * 28 15 14 51 51 H 1.08997 * 109.50308 * 299.23764 * 29 28 15 52 52 H 1.08996 * 109.53785 * 179.13596 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2366 -1.1219 -0.7650 5 6 2.2365 -1.1210 0.7649 6 1 1.6112 -1.8583 1.2686 7 6 3.5293 -0.7812 1.4607 8 8 3.9710 0.3468 1.4023 9 7 4.1947 -1.7307 2.1477 10 6 5.4518 -1.4005 2.8237 11 6 5.9968 -2.6467 3.5243 12 6 7.3100 -2.3019 4.2297 13 6 7.7922 -3.5126 5.0335 14 6 9.1360 -3.1824 5.6872 15 7 10.1158 -2.8399 4.6484 16 6 11.4528 -2.6515 5.2273 17 6 12.4694 -2.5460 4.1199 18 8 12.1151 -2.6199 2.9623 19 7 13.7723 -2.3694 4.4158 20 6 14.6971 -2.2729 3.4084 21 1 14.3817 -2.3388 2.3776 22 6 16.0404 -2.0904 3.7134 23 7 16.9270 -1.9984 2.7478 24 14 16.5861 -1.9758 5.4963 25 1 16.9115 -3.3333 6.0026 26 1 17.7891 -1.1105 5.5911 27 1 15.4912 -1.3923 6.3125 28 6 9.6972 -1.6516 3.8943 29 6 8.3702 -1.9361 3.1871 30 1 -0.3633 0.0773 1.0248 31 1 -0.3633 0.8488 -0.5792 32 1 -0.3634 -0.9261 -0.4454 33 1 3.1718 -0.8767 -1.2684 34 1 1.6114 -1.8599 -1.2677 35 1 3.8413 -2.6329 2.1946 36 1 5.2730 -0.6182 3.5614 37 1 6.1773 -1.0491 2.0901 38 1 6.1755 -3.4292 2.7869 39 1 5.2711 -2.9977 4.2579 40 1 7.1532 -1.4578 4.9013 41 1 7.9118 -4.3673 4.3677 42 1 7.0609 -3.7516 5.8056 43 1 9.0128 -2.3363 6.3634 44 1 9.4892 -4.0474 6.2485 45 1 11.4661 -1.7375 5.8211 46 1 11.6960 -3.5021 5.8641 47 1 14.0557 -2.3099 5.3416 48 1 17.8647 -1.8713 2.9608 49 1 10.4578 -1.4048 3.1537 50 1 9.5713 -0.8128 4.5791 51 1 8.4987 -2.7660 2.4923 52 1 8.0514 -1.0491 2.6397 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715199968.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:36 Heat of formation + Delta-G solvation = -84.337695 kcal Electronic energy + Delta-G solvation = -28556.720226 eV Core-core repulsion = 24555.130951 eV Total energy + Delta-G solvation = -4001.589275 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.11544 -40.76168 -39.50705 -37.94526 -36.76176 -35.95839 -34.83792 -33.74851 -31.74985 -31.21922 -29.64260 -28.50982 -26.49701 -25.24862 -24.29420 -23.68136 -22.20804 -21.83605 -21.27251 -20.95635 -20.52680 -20.19650 -18.40056 -17.76081 -17.18786 -16.88381 -16.72771 -16.47984 -16.27386 -15.67791 -15.58235 -15.35395 -15.32203 -15.01559 -14.88745 -14.53018 -14.35376 -14.21234 -14.10712 -13.81979 -13.70502 -13.63706 -13.16489 -12.94228 -12.90554 -12.74562 -12.60243 -12.41609 -12.34150 -12.20317 -12.07220 -11.98700 -11.62812 -11.51515 -11.37216 -11.25236 -11.12911 -11.08113 -10.78668 -10.30903 -10.22083 -10.11829 -9.14966 -8.41454 -6.02125 1.29380 1.35068 1.43769 1.44311 1.96556 2.12270 2.22648 2.66245 2.84045 3.14042 3.24870 3.67286 3.74285 3.77460 3.83555 3.86119 3.90409 4.12576 4.16727 4.24071 4.27618 4.35115 4.40601 4.40905 4.44896 4.54878 4.57988 4.62239 4.69893 4.74867 4.82177 4.85870 4.93870 4.97427 5.00938 5.04039 5.06664 5.11965 5.20489 5.22107 5.29831 5.30941 5.39779 5.44992 5.53013 5.56958 5.91888 6.08602 6.31488 6.53449 6.60529 6.88884 7.22613 7.40371 7.98412 8.76372 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022857 B = 0.001667 C = 0.001590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.703413 B =16791.313290 C =17605.369591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.134 4.134 3 H 0.088 0.912 4 C -0.141 4.141 5 C -0.191 4.191 6 H 0.155 0.845 7 C 0.531 3.469 8 O -0.594 6.594 9 N -0.712 5.712 10 C 0.117 3.883 11 C -0.109 4.109 12 C -0.078 4.078 13 C -0.102 4.102 14 C 0.052 3.948 15 N -0.537 5.537 16 C 0.054 3.946 17 C 0.450 3.550 18 O -0.605 6.605 19 N -0.593 5.593 20 C -0.328 4.328 21 H 0.053 0.947 22 C -0.015 4.015 23 N -0.936 5.936 24 Si 0.966 3.034 25 H -0.255 1.255 26 H -0.275 1.275 27 H -0.233 1.233 28 C 0.053 3.947 29 C -0.104 4.104 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.133 0.867 35 H 0.418 0.582 36 H 0.058 0.942 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.097 0.903 43 H 0.042 0.958 44 H 0.089 0.911 45 H 0.073 0.927 46 H 0.122 0.878 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.052 0.948 50 H 0.031 0.969 51 H 0.054 0.946 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.615 -3.256 7.792 34.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.152 4.152 3 H 0.106 0.894 4 C -0.178 4.178 5 C -0.211 4.211 6 H 0.173 0.827 7 C 0.319 3.681 8 O -0.475 6.475 9 N -0.364 5.364 10 C -0.006 4.006 11 C -0.146 4.146 12 C -0.098 4.098 13 C -0.140 4.140 14 C -0.075 4.075 15 N -0.262 5.262 16 C -0.077 4.077 17 C 0.238 3.762 18 O -0.489 6.489 19 N -0.235 5.235 20 C -0.457 4.457 21 H 0.072 0.928 22 C -0.213 4.213 23 N -0.576 5.576 24 Si 0.786 3.214 25 H -0.180 1.180 26 H -0.201 1.201 27 H -0.156 1.156 28 C -0.075 4.075 29 C -0.142 4.142 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.151 0.849 35 H 0.255 0.745 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.116 0.884 43 H 0.060 0.940 44 H 0.107 0.893 45 H 0.090 0.910 46 H 0.140 0.860 47 H 0.224 0.776 48 H 0.088 0.912 49 H 0.070 0.930 50 H 0.049 0.951 51 H 0.073 0.927 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -33.305 -2.897 6.597 34.076 hybrid contribution 1.398 0.762 0.742 1.756 sum -31.907 -2.135 7.338 32.810 Atomic orbital electron populations 1.21391 0.90124 1.03328 1.02645 1.22416 0.96729 0.94017 1.02081 0.89408 1.23203 1.02797 1.01637 0.90179 1.22393 0.96408 1.06099 0.96250 0.82724 1.20343 0.85600 0.84190 0.77989 1.90692 1.70170 1.23404 1.63217 1.45862 1.24155 1.13929 1.52431 1.21398 0.84772 0.98592 0.95875 1.21703 0.96640 0.96104 1.00201 1.21108 0.93329 0.98920 0.96402 1.21600 0.95265 0.97405 0.99741 1.22269 0.92223 1.00872 0.92147 1.61475 1.00865 1.37457 1.26421 1.21817 0.88462 1.03653 0.93788 1.20956 0.83225 0.80994 0.91034 1.90515 1.80048 1.54793 1.23564 1.42044 1.06455 1.67004 1.08004 1.18994 0.88344 1.49290 0.89098 0.92842 1.26110 0.94720 0.96085 1.04429 1.69806 1.02993 1.49733 1.35102 0.85355 0.79426 0.79777 0.76883 1.17973 1.20053 1.15618 1.22108 0.97911 0.90273 0.97171 1.21595 0.93437 1.01071 0.98094 0.91657 0.91426 0.90572 0.89946 0.84880 0.74462 0.92387 0.93490 0.90689 0.88535 0.90679 0.91758 0.88426 0.93977 0.89310 0.90967 0.86015 0.77554 0.91177 0.92986 0.95111 0.92719 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 10.19 71.98 0.73 -0.22 16 2 C -0.13 -1.85 5.92 -10.77 -0.06 -1.91 16 3 H 0.09 1.74 7.67 -2.39 -0.02 1.72 16 4 C -0.14 -1.63 9.88 30.62 0.30 -1.33 16 5 C -0.19 -2.43 5.91 -11.54 -0.07 -2.49 16 6 H 0.16 0.94 8.14 -2.39 -0.02 0.92 16 7 C 0.53 10.83 7.61 87.66 0.67 11.50 16 8 O -0.59 -18.30 16.26 -3.02 -0.05 -18.35 16 9 N -0.71 -10.63 5.56 -463.06 -2.57 -13.20 16 10 C 0.12 2.08 5.44 86.38 0.47 2.55 16 11 C -0.11 -1.40 4.80 30.59 0.15 -1.26 16 12 C -0.08 -1.37 2.25 -10.71 -0.02 -1.40 16 13 C -0.10 -1.66 5.38 30.65 0.16 -1.50 16 14 C 0.05 1.05 5.46 86.33 0.47 1.52 16 15 N -0.54 -16.44 4.40 -900.96 -3.96 -20.40 16 16 C 0.05 1.72 5.45 85.56 0.47 2.19 16 17 C 0.45 20.91 7.46 87.66 0.65 21.57 16 18 O -0.61 -34.31 13.90 -3.06 -0.04 -34.35 16 19 N -0.59 -28.62 5.09 -306.99 -1.56 -30.19 16 20 C -0.33 -19.61 10.16 84.04 0.85 -18.75 16 21 H 0.05 3.81 7.39 -2.91 -0.02 3.79 16 22 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 23 N -0.94 -57.26 13.96 21.66 0.30 -56.96 16 24 Si 0.97 39.36 27.74 68.60 1.90 41.26 16 25 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 26 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 27 H -0.23 -8.02 6.52 99.48 0.65 -7.37 16 28 C 0.05 1.73 5.10 86.33 0.44 2.17 16 29 C -0.10 -2.74 5.08 30.65 0.16 -2.58 16 30 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.08 0.36 7.90 -2.39 -0.02 0.34 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 34 H 0.13 0.79 8.05 -2.38 -0.02 0.77 16 35 H 0.42 3.20 8.47 -92.71 -0.79 2.41 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.05 1.09 6.63 -2.39 -0.02 1.07 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.09 1.55 8.01 -2.39 -0.02 1.53 16 45 H 0.07 1.98 8.12 -2.39 -0.02 1.96 16 46 H 0.12 3.12 7.99 -2.39 -0.02 3.10 16 47 H 0.39 15.52 5.76 -92.71 -0.53 14.99 16 48 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 49 H 0.05 2.22 5.78 -2.39 -0.01 2.21 16 50 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 51 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 52 H 0.06 1.61 6.70 -2.39 -0.02 1.60 16 Total: -1.00 -85.91 411.85 -0.61 -86.52 By element: Atomic # 1 Polarization: 36.46 SS G_CDS: -0.46 Total: 36.00 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 5.84 Total: 9.68 kcal Atomic # 7 Polarization: -112.96 SS G_CDS: -7.79 Total: -120.75 kcal Atomic # 8 Polarization: -52.61 SS G_CDS: -0.09 Total: -52.70 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 1.90 Total: 41.26 kcal Total: -85.91 -0.61 -86.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715199968.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.183 kcal (2) G-P(sol) polarization free energy of solvation -85.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds