Wall clock time and date at job start Tue Mar 31 2020 22:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50702 * 119.99942 * 2 1 4 4 C 1.32991 * 119.99740 * 179.97438 * 2 1 3 5 5 C 1.47097 * 120.00414 * 352.08993 * 4 2 1 6 6 O 1.21620 * 119.99723 * 355.56460 * 5 4 2 7 7 N 1.34771 * 120.00284 * 175.84578 * 5 4 2 8 8 C 1.46926 * 120.62865 * 5.90436 * 7 5 4 9 9 C 1.53195 * 108.77544 * 233.58667 * 8 7 5 10 10 C 1.53042 * 109.31248 * 305.36295 * 9 8 7 11 11 C 1.53042 * 109.53410 * 61.36720 * 10 9 8 12 12 H 1.09008 * 109.49668 * 178.68223 * 11 10 9 13 13 C 1.52996 * 109.49819 * 58.61857 * 11 10 9 14 14 C 1.46928 * 120.63241 * 185.62716 * 7 5 4 15 15 H 1.09003 * 109.58151 * 246.19998 * 14 7 5 16 16 C 1.52998 * 109.58519 * 6.62424 * 14 7 5 17 17 N 1.46896 * 109.47333 * 287.61371 * 16 14 7 18 18 C 1.46902 * 111.00341 * 180.02562 * 17 16 14 19 19 C 1.50692 * 109.47324 * 180.02562 * 18 17 16 20 20 O 1.21299 * 119.99932 * 359.97438 * 19 18 17 21 21 N 1.34780 * 120.00235 * 179.97438 * 19 18 17 22 22 C 1.37094 * 120.00075 * 179.97438 * 21 19 18 23 23 H 1.08000 * 120.00345 * 359.97438 * 22 21 19 24 24 C 1.38957 * 119.99706 * 180.02562 * 22 21 19 25 25 N 1.31401 * 120.00000 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99666 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47039 * 60.00223 * 26 24 22 28 28 H 1.48505 * 109.46800 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47552 * 299.99761 * 26 24 22 30 30 H 1.08998 * 109.47403 * 264.49420 * 1 2 3 31 31 H 1.09003 * 109.46972 * 24.49390 * 1 2 3 32 32 H 1.09001 * 109.47118 * 144.49063 * 1 2 3 33 33 H 1.08995 * 109.46848 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.46733 * 299.99855 * 3 2 1 35 35 H 1.09004 * 109.47256 * 59.99928 * 3 2 1 36 36 H 1.08003 * 119.99321 * 172.08446 * 4 2 1 37 37 H 1.08993 * 109.59009 * 353.37457 * 8 7 5 38 38 H 1.09003 * 109.58792 * 113.66067 * 8 7 5 39 39 H 1.08996 * 109.49753 * 65.31966 * 9 8 7 40 40 H 1.09000 * 109.49845 * 185.41436 * 9 8 7 41 41 H 1.09001 * 109.45786 * 181.38354 * 10 9 8 42 42 H 1.08996 * 109.46169 * 301.36428 * 10 9 8 43 43 H 1.08995 * 109.47284 * 59.99644 * 13 11 10 44 44 H 1.08998 * 109.47268 * 179.97438 * 13 11 10 45 45 H 1.09004 * 109.47230 * 299.99413 * 13 11 10 46 46 H 1.09003 * 109.47037 * 47.61355 * 16 14 7 47 47 H 1.09004 * 109.47100 * 167.61042 * 16 14 7 48 48 H 1.00907 * 111.00185 * 303.95320 * 17 16 14 49 49 H 1.09004 * 109.46390 * 299.99825 * 18 17 16 50 50 H 1.09001 * 109.47030 * 59.99354 * 18 17 16 51 51 H 0.96995 * 119.99677 * 359.97438 * 21 19 18 52 52 H 0.97001 * 120.00422 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1518 0.0005 5 6 1.4470 -2.4195 0.1764 6 8 0.2519 -2.4104 0.4018 7 7 2.1081 -3.5910 0.0934 8 6 3.5708 -3.6171 -0.0433 9 6 3.9368 -4.4652 -1.2654 10 6 3.2932 -5.8474 -1.1333 11 6 1.7706 -5.7005 -1.0859 12 1 1.3119 -6.6869 -1.0154 13 6 1.2851 -5.0013 -2.3572 14 6 1.3805 -4.8665 0.1439 15 1 1.6484 -5.4041 1.0534 16 6 -0.1258 -4.5986 0.1277 17 7 -0.5389 -4.0459 1.4245 18 6 -1.9828 -3.7762 1.4460 19 6 -2.3682 -3.2109 2.7886 20 8 -1.5233 -3.0490 3.6438 21 7 -3.6518 -2.8851 3.0393 22 6 -4.0026 -2.3713 4.2610 23 1 -3.2505 -2.2279 5.0227 24 6 -5.3260 -2.0359 4.5196 25 7 -6.2412 -2.2107 3.5930 26 14 -5.8041 -1.3365 6.1844 27 1 -5.0607 -0.0731 6.4225 28 1 -7.2636 -1.0630 6.2058 29 1 -5.4680 -2.3166 7.2482 30 1 -0.3634 -0.0986 1.0229 31 1 -0.3633 0.9352 -0.4261 32 1 -0.3633 -0.8365 -0.5969 33 1 3.3321 1.1059 0.0005 34 1 1.9972 1.8766 -0.8900 35 1 1.9972 1.8767 0.8900 36 1 3.2443 -1.1562 -0.1283 37 1 3.9433 -2.6017 -0.1783 38 1 4.0137 -4.0527 0.8524 39 1 3.5706 -3.9782 -2.1691 40 1 5.0200 -4.5723 -1.3227 41 1 3.5722 -6.4612 -1.9898 42 1 3.6405 -6.3237 -0.2165 43 1 1.5657 -5.5941 -3.2277 44 1 0.2006 -4.8972 -2.3231 45 1 1.7431 -4.0145 -2.4266 46 1 -0.3594 -3.8850 -0.6625 47 1 -0.6588 -5.5316 -0.0561 48 1 -0.2749 -4.6603 2.1801 49 1 -2.2296 -3.0570 0.6649 50 1 -2.5283 -4.7036 1.2715 51 1 -4.3274 -3.0141 2.3554 52 1 -7.1650 -1.9763 3.7733 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715360073.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:03 Heat of formation + Delta-G solvation = -18.718452 kcal Electronic energy + Delta-G solvation = -31266.672673 eV Core-core repulsion = 27267.928862 eV Total energy + Delta-G solvation = -3998.743811 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.63022 -38.00127 -37.89738 -35.63401 -34.68500 -33.72209 -33.41555 -31.83495 -31.02780 -28.65895 -27.64298 -27.29209 -26.67726 -25.38867 -24.18658 -23.08277 -21.90837 -20.74117 -19.16847 -18.68695 -17.86797 -17.63135 -16.95454 -15.99616 -15.84539 -15.21218 -15.04659 -14.96489 -14.43475 -14.37660 -14.06921 -13.98519 -13.83574 -13.61823 -13.57832 -13.22774 -12.91584 -12.84795 -12.61432 -12.44506 -12.23739 -12.01416 -11.94790 -11.79925 -11.61212 -11.50841 -11.39991 -11.26817 -11.20506 -11.08181 -10.92902 -10.86259 -10.51804 -10.39425 -10.35312 -10.08739 -9.35881 -8.92103 -8.55624 -8.24818 -8.14010 -7.81302 -7.29991 -6.28500 -3.68411 1.65472 3.21733 3.28124 3.32109 3.37235 3.73388 4.12786 4.24565 4.44765 4.47172 4.58780 4.77312 4.82246 4.90599 5.01596 5.05859 5.10572 5.29128 5.31797 5.37596 5.40078 5.46160 5.47134 5.48669 5.55593 5.59713 5.65708 5.68027 5.71624 5.76733 5.81063 5.85551 5.94305 5.96382 5.97838 6.10955 6.16041 6.19162 6.26553 6.34794 6.36920 6.52092 6.69671 6.77396 6.87820 7.63409 7.67217 7.81682 8.07748 8.22556 8.78543 8.82645 9.32816 9.72031 10.25572 10.89821 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013574 B = 0.003119 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.208028 B = 8974.413866 C =10260.754574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.038 4.038 3 C -0.124 4.124 4 C -0.237 4.237 5 C 0.525 3.475 6 O -0.453 6.453 7 N -0.608 5.608 8 C 0.110 3.890 9 C -0.137 4.137 10 C -0.112 4.112 11 C -0.102 4.102 12 H 0.077 0.923 13 C -0.145 4.145 14 C 0.160 3.840 15 H 0.066 0.934 16 C 0.075 3.925 17 N -0.624 5.624 18 C 0.064 3.936 19 C 0.450 3.550 20 O -0.582 6.582 21 N -0.571 5.571 22 C -0.295 4.295 23 H 0.100 0.900 24 C 0.020 3.980 25 N -0.906 5.906 26 Si 0.928 3.072 27 H -0.275 1.275 28 H -0.285 1.285 29 H -0.275 1.275 30 H 0.085 0.915 31 H 0.047 0.953 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.117 0.883 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.050 0.950 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.088 0.912 47 H 0.014 0.986 48 H 0.325 0.675 49 H 0.084 0.916 50 H 0.029 0.971 51 H 0.391 0.609 52 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.980 -3.051 -15.322 25.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.040 4.040 3 C -0.181 4.181 4 C -0.258 4.258 5 C 0.314 3.686 6 O -0.325 6.325 7 N -0.345 5.345 8 C -0.013 4.013 9 C -0.176 4.176 10 C -0.150 4.150 11 C -0.122 4.122 12 H 0.095 0.905 13 C -0.202 4.202 14 C 0.056 3.944 15 H 0.084 0.916 16 C -0.054 4.054 17 N -0.257 5.257 18 C -0.069 4.069 19 C 0.236 3.764 20 O -0.466 6.466 21 N -0.208 5.208 22 C -0.424 4.424 23 H 0.118 0.882 24 C -0.181 4.181 25 N -0.548 5.548 26 Si 0.756 3.244 27 H -0.200 1.200 28 H -0.211 1.211 29 H -0.201 1.201 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.134 0.866 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.106 0.894 47 H 0.031 0.969 48 H 0.144 0.856 49 H 0.103 0.897 50 H 0.046 0.954 51 H 0.224 0.776 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 19.823 -2.218 -14.763 24.815 hybrid contribution -0.800 -0.695 0.496 1.170 sum 19.023 -2.913 -14.267 23.956 Atomic orbital electron populations 1.21110 0.90614 1.01744 1.04314 1.22502 0.97043 0.94179 0.90263 1.20979 0.99418 0.94970 1.02723 1.22551 0.99572 0.92907 1.10791 1.18429 0.87956 0.83365 0.78814 1.91039 1.13699 1.85348 1.42395 1.47707 1.06076 1.05289 1.75428 1.21668 0.81210 1.00936 0.97522 1.21977 1.00223 0.96351 0.99011 1.21517 0.94765 0.96854 1.01872 1.21577 0.95978 0.99112 0.95514 0.90477 1.21848 1.01401 1.00755 0.96221 1.21215 0.92365 0.84277 0.96583 0.91634 1.22071 0.92135 0.96228 0.94993 1.60469 1.13624 1.49235 1.02347 1.21493 0.88929 0.98883 0.97576 1.19930 0.83166 0.84205 0.89140 1.90500 1.49686 1.58486 1.47894 1.41859 1.07040 1.56748 1.15147 1.19629 0.93595 1.37664 0.91554 0.88216 1.25214 0.95493 0.98145 0.99241 1.69607 1.02243 1.49111 1.33816 0.85959 0.77088 0.79463 0.81914 1.20008 1.21077 1.20052 0.89680 0.93412 0.89393 0.91900 0.91134 0.90509 0.86577 0.89786 0.92055 0.91172 0.91281 0.91904 0.91885 0.93123 0.92426 0.92160 0.89387 0.96869 0.85646 0.89732 0.95360 0.77614 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 8.48 36.01 0.31 -1.47 16 2 C -0.04 -0.48 6.11 -101.16 -0.62 -1.09 16 3 C -0.12 -1.15 10.10 36.01 0.36 -0.79 16 4 C -0.24 -2.94 8.95 -37.81 -0.34 -3.28 16 5 C 0.52 7.62 7.23 -12.67 -0.09 7.53 16 6 O -0.45 -7.97 6.74 5.26 0.04 -7.93 16 7 N -0.61 -7.24 2.40 -166.35 -0.40 -7.64 16 8 C 0.11 0.96 6.35 -3.71 -0.02 0.94 16 9 C -0.14 -0.97 5.74 -26.61 -0.15 -1.12 16 10 C -0.11 -0.83 5.43 -26.69 -0.14 -0.98 16 11 C -0.10 -0.92 2.79 -90.28 -0.25 -1.17 16 12 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 13 C -0.15 -1.33 8.24 37.16 0.31 -1.02 16 14 C 0.16 1.89 2.80 -67.38 -0.19 1.70 16 15 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 16 C 0.08 1.07 3.42 -3.83 -0.01 1.06 16 17 N -0.62 -11.43 3.45 -115.06 -0.40 -11.83 16 18 C 0.06 1.29 5.76 -4.98 -0.03 1.26 16 19 C 0.45 11.52 7.82 -10.99 -0.09 11.43 16 20 O -0.58 -16.94 15.78 5.54 0.09 -16.85 16 21 N -0.57 -15.45 5.29 -10.96 -0.06 -15.51 16 22 C -0.29 -8.66 9.68 -14.93 -0.14 -8.80 16 23 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 24 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 25 N -0.91 -25.75 13.05 55.50 0.72 -25.03 16 26 Si 0.93 21.98 29.55 -169.99 -5.02 16.95 16 27 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 29 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 30 H 0.08 1.52 8.04 -51.93 -0.42 1.10 16 31 H 0.05 0.60 8.09 -51.93 -0.42 0.18 16 32 H 0.09 1.39 6.14 -51.93 -0.32 1.07 16 33 H 0.06 0.49 7.82 -51.93 -0.41 0.08 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.12 1.13 5.69 -52.48 -0.30 0.83 16 37 H 0.08 0.65 5.30 -51.93 -0.28 0.38 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.53 6.34 -51.93 -0.33 0.20 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.58 6.67 -51.93 -0.35 0.24 16 45 H 0.06 0.60 5.98 -51.93 -0.31 0.29 16 46 H 0.09 1.35 5.41 -51.93 -0.28 1.07 16 47 H 0.01 0.18 8.10 -51.93 -0.42 -0.24 16 48 H 0.32 6.22 8.38 -39.29 -0.33 5.89 16 49 H 0.08 1.68 7.92 -51.93 -0.41 1.27 16 50 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 51 H 0.39 10.20 7.90 -40.82 -0.32 9.88 16 52 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 396.57 15.07 5.98 5.98 Total: -1.00 -33.49 396.57 -8.88 -42.37 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: -8.62 Total: 14.85 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -1.20 Total: 4.65 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -0.13 Total: -60.01 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: 0.12 Total: -24.78 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.49 -8.88 -42.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715360073.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.650 kcal (2) G-P(sol) polarization free energy of solvation -33.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds