Wall clock time and date at job start Tue Mar 31 2020 22:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.49642 * 2 1 4 4 C 1.53034 * 109.49859 * 120.06618 * 2 1 3 5 5 C 1.53040 * 109.54072 * 58.61707 * 4 2 1 6 6 C 1.53196 * 109.31040 * 61.36071 * 5 4 2 7 7 N 1.46917 * 108.77888 * 305.37259 * 6 5 4 8 8 C 1.34780 * 120.62560 * 233.58845 * 7 6 5 9 9 O 1.21282 * 119.99842 * 174.92066 * 8 7 6 10 10 C 1.50692 * 120.00307 * 354.91589 * 8 7 6 11 11 C 1.52999 * 109.47420 * 180.02562 * 10 8 7 12 12 N 1.46502 * 109.47380 * 180.02562 * 11 10 8 13 13 C 1.46818 * 124.33892 * 269.93547 * 12 11 10 14 14 C 1.54473 * 105.44738 * 196.99984 * 13 12 11 15 15 C 1.54635 * 101.79931 * 334.62823 * 14 13 12 16 16 C 1.34427 * 124.34776 * 89.97071 * 12 11 10 17 17 O 1.21286 * 124.94131 * 359.63397 * 16 12 11 18 18 C 1.46921 * 118.74393 * 53.85277 * 7 6 5 19 19 H 1.09004 * 109.58455 * 65.93306 * 18 7 6 20 20 C 1.53000 * 109.58858 * 186.35276 * 18 7 6 21 21 N 1.46501 * 109.46922 * 180.92635 * 20 18 7 22 22 C 1.36945 * 119.99917 * 185.46185 * 21 20 18 23 23 H 1.07999 * 119.99929 * 0.02562 * 22 21 20 24 24 C 1.38813 * 120.00098 * 179.97438 * 22 21 20 25 25 N 1.31621 * 119.99923 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99920 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47368 * 60.00447 * 26 24 22 28 28 H 1.48500 * 109.46959 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.47237 * 300.00366 * 26 24 22 30 30 H 1.09003 * 109.47050 * 299.93561 * 1 2 3 31 31 H 1.08999 * 109.47296 * 59.93398 * 1 2 3 32 32 H 1.08997 * 109.47469 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.45951 * 298.59488 * 4 2 1 34 34 H 1.08999 * 109.45862 * 178.63974 * 4 2 1 35 35 H 1.09000 * 109.49602 * 301.41277 * 5 4 2 36 36 H 1.09002 * 109.49788 * 181.31371 * 5 4 2 37 37 H 1.08992 * 109.58470 * 185.57509 * 6 5 4 38 38 H 1.09007 * 109.58307 * 65.15604 * 6 5 4 39 39 H 1.09001 * 109.47248 * 60.00229 * 10 8 7 40 40 H 1.09003 * 109.47319 * 300.00781 * 10 8 7 41 41 H 1.08993 * 109.47246 * 60.00319 * 11 10 8 42 42 H 1.09007 * 109.47220 * 299.99920 * 11 10 8 43 43 H 1.09004 * 110.23587 * 78.01824 * 13 12 11 44 44 H 1.09001 * 110.28156 * 316.00563 * 13 12 11 45 45 H 1.09009 * 110.96749 * 216.49443 * 14 13 12 46 46 H 1.09001 * 110.97015 * 92.76718 * 14 13 12 47 47 H 1.08997 * 110.48427 * 143.46244 * 15 14 13 48 48 H 1.08996 * 110.48356 * 265.97101 * 15 14 13 49 49 H 1.08992 * 109.47528 * 300.93000 * 20 18 7 50 50 H 1.08999 * 109.46632 * 60.93220 * 20 18 7 51 51 H 0.96997 * 120.00240 * 5.46828 * 21 20 18 52 52 H 0.96996 * 120.00165 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7227 1.2485 5 6 1.5037 -2.1557 1.2662 6 6 2.0152 -2.9037 0.0310 7 7 1.6528 -2.1382 -1.1694 8 6 0.9765 -2.7225 -2.1782 9 8 0.6026 -2.0589 -3.1220 10 6 0.6848 -4.2002 -2.1334 11 6 -0.0880 -4.6059 -3.3900 12 7 -0.3721 -6.0425 -3.3462 13 6 0.5125 -7.0786 -3.8935 14 6 -0.3638 -8.3448 -4.0163 15 6 -1.4447 -8.0869 -2.9409 16 6 -1.4762 -6.5810 -2.8005 17 8 -2.3685 -5.9511 -2.2731 18 6 2.0467 -0.7251 -1.2518 19 1 3.1333 -0.6508 -1.2981 20 6 1.4329 -0.0937 -2.5030 21 7 1.8453 1.3091 -2.5944 22 6 1.3275 2.1125 -3.5752 23 1 0.6148 1.7120 -4.2810 24 6 1.7179 3.4418 -3.6616 25 7 2.5860 3.9300 -2.8011 26 14 1.0110 4.5377 -4.9989 27 1 -0.4653 4.6061 -4.8541 28 1 1.5846 5.9019 -4.8756 29 1 1.3521 3.9764 -6.3307 30 1 -0.3633 0.5128 0.8906 31 1 -0.3634 0.5148 -0.8894 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6983 -0.1955 2.1390 34 1 3.1305 -0.7435 1.2357 35 1 0.4139 -2.1358 1.2540 36 1 1.8488 -2.6625 2.1674 37 1 1.5572 -3.8917 -0.0134 38 1 3.0993 -3.0035 0.0873 39 1 0.0873 -4.4261 -1.2503 40 1 1.6224 -4.7545 -2.0891 41 1 0.5099 -4.3802 -4.2730 42 1 -1.0256 -4.0517 -3.4347 43 1 1.3453 -7.2607 -3.2141 44 1 0.8831 -6.7798 -4.8740 45 1 0.2113 -9.2413 -3.7842 46 1 -0.8097 -8.4159 -5.0084 47 1 -2.4127 -8.4593 -3.2761 48 1 -1.1630 -8.5542 -1.9974 49 1 1.7755 -0.6315 -3.3869 50 1 0.3460 -0.1496 -2.4422 51 1 2.4852 1.6689 -1.9604 52 1 2.8591 4.8587 -2.8617 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715468942.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:35 Heat of formation + Delta-G solvation = -43.306044 kcal Electronic energy + Delta-G solvation = -30855.395488 eV Core-core repulsion = 26855.585479 eV Total energy + Delta-G solvation = -3999.810009 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.80962 -40.34945 -37.69015 -36.64421 -34.91147 -33.93269 -33.27657 -32.07008 -30.18652 -30.01406 -27.90506 -27.06854 -26.01064 -24.73305 -23.77067 -22.86879 -22.22321 -21.03902 -20.00548 -19.47542 -18.25238 -17.32131 -16.96700 -16.85485 -16.25576 -15.92511 -15.72704 -15.18279 -14.84524 -14.55149 -14.25072 -14.06074 -13.94387 -13.81826 -13.73270 -13.48153 -13.23963 -13.09413 -12.83484 -12.70734 -12.60804 -12.32525 -12.07216 -11.93240 -11.84900 -11.46646 -11.35301 -11.28438 -11.18166 -10.91195 -10.79792 -10.70134 -10.53968 -10.27464 -10.08466 -10.02671 -9.92938 -9.58784 -9.08542 -8.77298 -8.67681 -8.24990 -6.70593 -5.62401 -2.88111 2.33524 2.62945 2.81435 3.20135 3.54261 3.57332 3.59835 4.00286 4.07585 4.39390 4.56684 4.65546 4.68175 4.75640 4.82205 4.83650 4.93336 5.02891 5.10778 5.11590 5.21299 5.26341 5.28336 5.36558 5.37593 5.44331 5.54564 5.55903 5.59810 5.71892 5.78885 5.82070 5.86010 5.99099 6.03440 6.05798 6.11059 6.25362 6.31168 6.36349 6.44850 6.51625 6.80549 6.86280 6.86659 7.19261 7.38020 7.62264 7.87647 7.92285 8.40584 8.59448 9.68185 10.28184 10.62912 11.61198 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012534 B = 0.002963 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.475702 B = 9448.136529 C =10923.012490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 H 0.091 0.909 4 C -0.116 4.116 5 C -0.137 4.137 6 C 0.109 3.891 7 N -0.604 5.604 8 C 0.510 3.490 9 O -0.515 6.515 10 C -0.156 4.156 11 C 0.141 3.859 12 N -0.620 5.620 13 C 0.099 3.901 14 C -0.132 4.132 15 C -0.156 4.156 16 C 0.513 3.487 17 O -0.529 6.529 18 C 0.144 3.856 19 H 0.068 0.932 20 C 0.162 3.838 21 N -0.737 5.737 22 C -0.222 4.222 23 H 0.069 0.931 24 C -0.019 4.019 25 N -0.939 5.939 26 Si 0.905 3.095 27 H -0.287 1.287 28 H -0.293 1.293 29 H -0.287 1.287 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.090 0.910 46 H 0.082 0.918 47 H 0.101 0.899 48 H 0.103 0.897 49 H 0.041 0.959 50 H 0.043 0.957 51 H 0.378 0.622 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.599 -28.031 5.921 28.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.117 4.117 3 H 0.109 0.891 4 C -0.153 4.153 5 C -0.175 4.175 6 C -0.014 4.014 7 N -0.338 5.338 8 C 0.297 3.703 9 O -0.390 6.390 10 C -0.197 4.197 11 C 0.019 3.981 12 N -0.354 5.354 13 C -0.024 4.024 14 C -0.170 4.170 15 C -0.196 4.196 16 C 0.300 3.700 17 O -0.405 6.405 18 C 0.041 3.959 19 H 0.086 0.914 20 C 0.036 3.964 21 N -0.383 5.383 22 C -0.354 4.354 23 H 0.087 0.913 24 C -0.214 4.214 25 N -0.589 5.589 26 Si 0.737 3.263 27 H -0.214 1.214 28 H -0.219 1.219 29 H -0.214 1.214 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.090 0.910 44 H 0.100 0.900 45 H 0.109 0.891 46 H 0.101 0.899 47 H 0.119 0.881 48 H 0.122 0.878 49 H 0.058 0.942 50 H 0.061 0.939 51 H 0.211 0.789 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.366 -27.219 5.527 27.808 hybrid contribution 0.115 0.748 -0.280 0.807 sum -1.251 -26.471 5.247 27.015 Atomic orbital electron populations 1.21800 0.94933 1.00846 1.02146 1.21512 0.96776 1.00224 0.93210 0.89117 1.21580 1.00285 0.95009 0.98442 1.21958 1.01843 0.96694 0.97011 1.21693 1.00099 0.94801 0.84794 1.48107 1.56375 1.11667 1.17687 1.20348 0.78270 0.89108 0.82571 1.90860 1.50234 1.63750 1.34144 1.22069 1.02272 0.94294 1.01088 1.21140 1.01737 0.78021 0.97220 1.48391 1.21385 1.06862 1.58794 1.22135 0.93180 0.87305 0.99768 1.22603 0.96895 0.97789 0.99725 1.22338 1.01857 0.93954 1.01454 1.20964 0.81256 0.90471 0.77262 1.90761 1.37604 1.68157 1.43988 1.21718 0.98465 0.78377 0.97345 0.91355 1.21337 0.97656 0.84980 0.92433 1.42555 1.52866 1.05952 1.36894 1.19184 1.18932 0.91184 1.06106 0.91320 1.24682 1.00242 0.97107 0.99397 1.69645 1.36511 1.14396 1.38388 0.86284 0.78435 0.79889 0.81742 1.21429 1.21875 1.21440 0.93615 0.91120 0.93523 0.91869 0.92036 0.91078 0.91233 0.90250 0.91509 0.88947 0.89119 0.89219 0.88925 0.90987 0.90045 0.89130 0.89897 0.88101 0.87849 0.94185 0.93946 0.78912 0.93753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.21 37.16 0.31 -2.05 16 2 C -0.10 -1.59 2.58 -90.28 -0.23 -1.82 16 3 H 0.09 1.71 7.28 -51.93 -0.38 1.33 16 4 C -0.12 -1.42 5.43 -26.69 -0.14 -1.56 16 5 C -0.14 -1.39 5.74 -26.61 -0.15 -1.55 16 6 C 0.11 1.10 6.32 -3.71 -0.02 1.08 16 7 N -0.60 -8.50 2.40 -164.98 -0.40 -8.90 16 8 C 0.51 7.61 7.61 -10.99 -0.08 7.53 16 9 O -0.51 -9.89 11.39 5.56 0.06 -9.82 16 10 C -0.16 -1.67 4.42 -27.89 -0.12 -1.79 16 11 C 0.14 1.59 5.22 -4.04 -0.02 1.57 16 12 N -0.62 -5.73 2.93 -172.37 -0.51 -6.23 16 13 C 0.10 0.53 7.35 -3.10 -0.02 0.50 16 14 C -0.13 -0.50 7.18 -25.10 -0.18 -0.68 16 15 C -0.16 -0.94 6.86 -26.74 -0.18 -1.12 16 16 C 0.51 5.55 8.02 -10.86 -0.09 5.46 16 17 O -0.53 -8.27 17.59 5.55 0.10 -8.17 16 18 C 0.14 2.50 2.75 -67.38 -0.19 2.31 16 19 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 20 C 0.16 3.64 3.66 -4.04 -0.01 3.63 16 21 N -0.74 -19.58 5.29 -59.91 -0.32 -19.90 16 22 C -0.22 -6.59 9.99 -15.06 -0.15 -6.74 16 23 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 24 C -0.02 -0.58 5.50 -17.43 -0.10 -0.68 16 25 N -0.94 -29.22 13.06 55.49 0.72 -28.50 16 26 Si 0.90 23.55 29.55 -169.99 -5.02 18.53 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 28 H -0.29 -7.61 7.11 56.52 0.40 -7.20 16 29 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.43 6.36 -51.93 -0.33 1.10 16 32 H 0.05 0.74 5.97 -51.93 -0.31 0.43 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.79 6.34 -51.93 -0.33 0.47 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.64 5.96 -51.93 -0.31 0.33 16 38 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 39 H 0.09 0.98 7.48 -51.93 -0.39 0.60 16 40 H 0.09 0.75 8.11 -51.93 -0.42 0.33 16 41 H 0.09 0.98 8.10 -51.93 -0.42 0.56 16 42 H 0.09 1.31 7.89 -51.93 -0.41 0.90 16 43 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 0.16 8.14 -51.92 -0.42 -0.26 16 46 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.04 0.99 6.37 -51.93 -0.33 0.66 16 50 H 0.04 1.03 5.25 -51.93 -0.27 0.76 16 51 H 0.38 10.31 6.88 -40.82 -0.28 10.03 16 52 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 396.21 15.07 5.97 5.97 Total: -1.00 -36.53 396.21 -9.58 -46.11 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -8.80 Total: 6.82 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -1.40 Total: 4.10 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: -0.49 Total: -63.53 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: 0.16 Total: -18.00 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -5.02 Total: 18.53 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.53 -9.58 -46.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715468942.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.808 kcal (2) G-P(sol) polarization free energy of solvation -36.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds