Wall clock time and date at job start Tue Mar 31 2020 22:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.49817 * 2 1 4 4 C 1.53041 * 109.49812 * 120.05986 * 2 1 3 5 5 C 1.53041 * 109.53520 * 58.61861 * 4 2 1 6 6 C 1.53187 * 109.31354 * 61.36687 * 5 4 2 7 7 N 1.46921 * 108.77650 * 305.36549 * 6 5 4 8 8 C 1.34782 * 120.62979 * 233.58497 * 7 6 5 9 9 O 1.21280 * 119.99778 * 185.56744 * 8 7 6 10 10 C 1.50692 * 120.00139 * 5.57399 * 8 7 6 11 11 N 1.46499 * 109.47531 * 174.99301 * 10 8 7 12 12 C 1.46502 * 120.00489 * 94.91869 * 11 10 8 13 13 C 1.34780 * 119.99731 * 274.92965 * 11 10 8 14 14 O 1.21277 * 120.00046 * 359.97438 * 13 11 10 15 15 C 1.50695 * 119.99732 * 179.97438 * 13 11 10 16 16 C 1.53002 * 117.49870 * 248.74035 * 15 13 11 17 17 C 1.53002 * 117.49820 * 180.08460 * 15 13 11 18 18 C 1.46922 * 118.74069 * 53.85893 * 7 6 5 19 19 H 1.09002 * 109.58842 * 65.92651 * 18 7 6 20 20 C 1.53005 * 109.59028 * 186.35674 * 18 7 6 21 21 N 1.46503 * 109.47294 * 178.05546 * 20 18 7 22 22 C 1.36931 * 120.00005 * 185.04024 * 21 20 18 23 23 H 1.08002 * 120.00057 * 4.99574 * 22 21 20 24 24 C 1.38811 * 120.00083 * 184.99654 * 22 21 20 25 25 N 1.31620 * 119.99912 * 184.93415 * 24 22 21 26 26 Si 1.86798 * 119.99861 * 4.93930 * 24 22 21 27 27 H 1.48490 * 109.47796 * 94.83601 * 26 24 22 28 28 H 1.48503 * 109.46828 * 214.83858 * 26 24 22 29 29 H 1.48501 * 109.47322 * 334.83172 * 26 24 22 30 30 H 1.09001 * 109.47306 * 299.94179 * 1 2 3 31 31 H 1.09002 * 109.47109 * 59.94112 * 1 2 3 32 32 H 1.09002 * 109.47145 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.45945 * 298.60204 * 4 2 1 34 34 H 1.08996 * 109.45005 * 178.63407 * 4 2 1 35 35 H 1.09006 * 109.50027 * 301.41484 * 5 4 2 36 36 H 1.09007 * 109.49856 * 181.31925 * 5 4 2 37 37 H 1.09001 * 109.58618 * 185.57638 * 6 5 4 38 38 H 1.09000 * 109.58523 * 65.15120 * 6 5 4 39 39 H 1.09007 * 109.47128 * 294.98683 * 10 8 7 40 40 H 1.08997 * 109.47637 * 54.98656 * 10 8 7 41 41 H 1.09003 * 109.46621 * 95.12957 * 12 11 10 42 42 H 1.08996 * 109.47437 * 215.13602 * 12 11 10 43 43 H 1.09000 * 109.46547 * 335.13848 * 12 11 10 44 44 H 1.09004 * 115.55712 * 34.41029 * 15 13 11 45 45 H 1.08999 * 117.49749 * 0.02562 * 16 15 13 46 46 H 1.09003 * 117.50035 * 145.02003 * 16 15 13 47 47 H 1.09001 * 117.50121 * 214.97684 * 17 15 13 48 48 H 1.09002 * 117.49799 * 359.96952 * 17 15 13 49 49 H 1.09006 * 109.46595 * 298.05473 * 20 18 7 50 50 H 1.09000 * 109.47155 * 58.05234 * 20 18 7 51 51 H 0.97002 * 119.99948 * 5.04120 * 21 20 18 52 52 H 0.97001 * 119.99397 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7226 1.2486 5 6 1.5036 -2.1556 1.2663 6 6 2.0153 -2.9037 0.0314 7 7 1.6529 -2.1383 -1.1691 8 6 0.9767 -2.7227 -2.1780 9 8 0.7715 -2.1110 -3.2049 10 6 0.4755 -4.1361 -2.0300 11 7 -0.3235 -4.4965 -3.2038 12 6 0.2996 -5.2046 -4.3248 13 6 -1.6318 -4.1763 -3.2526 14 8 -2.1477 -3.5904 -2.3245 15 6 -2.4536 -4.5465 -4.4603 16 6 -2.9445 -3.4080 -5.3567 17 6 -3.9323 -4.1536 -4.4561 18 6 2.0469 -0.7253 -1.2517 19 1 3.1334 -0.6510 -1.2979 20 6 1.4331 -0.0938 -2.5029 21 7 1.7892 1.3262 -2.5582 22 6 1.2656 2.1257 -3.5388 23 1 0.5286 1.7300 -4.2220 24 6 1.6820 3.4448 -3.6549 25 7 1.1097 4.2407 -4.5332 26 14 3.0546 4.0902 -2.5646 27 1 4.3491 3.9863 -3.2846 28 1 2.7899 5.5114 -2.2248 29 1 3.1159 3.2863 -1.3176 30 1 -0.3634 0.5129 0.8905 31 1 -0.3633 0.5148 -0.8895 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6982 -0.1954 2.1390 34 1 3.1305 -0.7434 1.2356 35 1 0.4138 -2.1358 1.2541 36 1 1.8486 -2.6624 2.1676 37 1 1.5572 -3.8918 -0.0131 38 1 3.0993 -3.0035 0.0877 39 1 1.3238 -4.8154 -1.9455 40 1 -0.1407 -4.2112 -1.1340 41 1 0.1383 -6.2767 -4.2120 42 1 -0.1456 -4.8666 -5.2606 43 1 1.3696 -4.9973 -4.3358 44 1 -2.1839 -5.4862 -4.9425 45 1 -2.6727 -2.3912 -5.0731 46 1 -2.9980 -3.5986 -6.4286 47 1 -4.6354 -4.8346 -4.9358 48 1 -4.3108 -3.6279 -3.5795 49 1 1.8155 -0.5992 -3.3898 50 1 0.3484 -0.1952 -2.4663 51 1 2.3960 1.7000 -1.9002 52 1 1.4010 5.1623 -4.6145 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715474428.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:44 Heat of formation + Delta-G solvation = -0.979562 kcal Electronic energy + Delta-G solvation = -31770.878603 eV Core-core repulsion = 27772.904008 eV Total energy + Delta-G solvation = -3997.974595 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.84294 -39.89688 -37.69623 -36.27740 -35.47672 -34.89311 -33.36305 -32.09874 -30.41299 -29.52416 -27.12521 -26.65674 -26.09459 -24.39540 -23.63736 -22.61004 -22.48318 -21.01270 -20.32192 -18.96572 -18.34808 -17.68314 -17.59348 -16.84616 -16.45752 -15.77802 -15.36457 -14.95823 -14.88254 -14.73244 -14.38168 -14.16024 -14.01747 -13.70860 -13.53232 -13.34467 -13.14747 -13.00838 -12.72884 -12.64233 -12.43057 -12.25158 -12.02878 -11.89356 -11.62299 -11.56104 -11.40940 -11.08988 -10.88182 -10.80427 -10.69796 -10.62530 -10.61407 -10.28836 -10.16955 -10.03366 -9.88991 -9.46254 -9.27391 -8.79529 -8.47946 -8.34549 -6.99714 -5.62346 -2.95066 2.36611 2.66508 2.79873 3.17949 3.42543 3.47480 3.52329 3.78312 4.33749 4.49431 4.66583 4.68161 4.70607 4.79083 4.81787 4.87317 4.93664 4.94146 4.95524 5.10628 5.13421 5.27896 5.29372 5.30669 5.45390 5.52650 5.53389 5.61491 5.66584 5.70687 5.77337 5.86116 5.89421 5.90266 5.94293 6.00621 6.02791 6.06190 6.20584 6.27707 6.34831 6.41703 6.73230 6.76859 7.09104 7.17656 7.29676 7.56253 8.08839 8.17929 8.41566 8.58055 9.38523 10.10524 10.31846 11.56888 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010222 B = 0.004177 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.574891 B = 6700.986433 C = 8418.959693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 H 0.083 0.917 4 C -0.115 4.115 5 C -0.138 4.138 6 C 0.109 3.891 7 N -0.605 5.605 8 C 0.492 3.508 9 O -0.503 6.503 10 C 0.099 3.901 11 N -0.599 5.599 12 C 0.085 3.915 13 C 0.551 3.449 14 O -0.533 6.533 15 C -0.194 4.194 16 C -0.147 4.147 17 C -0.150 4.150 18 C 0.142 3.858 19 H 0.067 0.933 20 C 0.164 3.836 21 N -0.761 5.761 22 C -0.226 4.226 23 H 0.088 0.912 24 C -0.001 4.001 25 N -0.938 5.938 26 Si 0.886 3.114 27 H -0.287 1.287 28 H -0.293 1.293 29 H -0.280 1.280 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.122 0.878 45 H 0.105 0.895 46 H 0.104 0.896 47 H 0.101 0.899 48 H 0.107 0.893 49 H 0.054 0.946 50 H 0.043 0.957 51 H 0.356 0.644 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.940 -25.305 8.028 26.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 H 0.101 0.899 4 C -0.153 4.153 5 C -0.176 4.176 6 C -0.014 4.014 7 N -0.341 5.341 8 C 0.278 3.722 9 O -0.376 6.376 10 C -0.028 4.028 11 N -0.332 5.332 12 C -0.058 4.058 13 C 0.340 3.660 14 O -0.409 6.409 15 C -0.215 4.215 16 C -0.185 4.185 17 C -0.187 4.187 18 C 0.039 3.961 19 H 0.085 0.915 20 C 0.038 3.962 21 N -0.409 5.409 22 C -0.356 4.356 23 H 0.106 0.894 24 C -0.196 4.196 25 N -0.588 5.588 26 Si 0.718 3.282 27 H -0.214 1.214 28 H -0.220 1.220 29 H -0.207 1.207 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.140 0.860 45 H 0.123 0.877 46 H 0.123 0.877 47 H 0.120 0.880 48 H 0.125 0.875 49 H 0.071 0.929 50 H 0.061 0.939 51 H 0.189 0.811 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.466 -24.630 7.741 25.860 hybrid contribution 1.281 0.568 0.870 1.649 sum -0.186 -24.062 8.612 25.558 Atomic orbital electron populations 1.21813 0.94450 1.01380 1.02262 1.21535 0.97200 0.99699 0.93484 0.89862 1.21574 1.00184 0.95252 0.98276 1.21965 1.02049 0.96479 0.97085 1.21707 1.00152 0.94684 0.84859 1.48096 1.56737 1.11408 1.17812 1.21062 0.78396 0.89024 0.83747 1.90838 1.55280 1.63269 1.28210 1.21373 0.96667 0.94274 0.90505 1.47292 1.08719 1.58233 1.18925 1.21795 0.99192 0.95572 0.89269 1.19676 0.81304 0.77620 0.87425 1.90700 1.71340 1.40548 1.38337 1.22139 0.98086 1.01903 0.99346 1.22987 1.01734 0.96689 0.97043 1.22964 0.89988 1.03002 1.02770 1.21702 0.98355 0.78854 0.97189 0.91501 1.21308 0.98163 0.83589 0.93101 1.43017 1.57311 1.05729 1.34868 1.19045 1.17676 0.91965 1.06904 0.89408 1.24670 0.99806 0.96287 0.98834 1.69720 1.44514 1.06088 1.38435 0.86506 0.83454 0.77858 0.80416 1.21427 1.21963 1.20685 0.93526 0.91028 0.93051 0.91796 0.92094 0.90847 0.91101 0.90241 0.91316 0.87765 0.87550 0.92542 0.90612 0.90812 0.85998 0.87683 0.87730 0.88048 0.87476 0.92857 0.93926 0.81080 0.93332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.21 37.16 0.31 -2.09 16 2 C -0.10 -1.57 2.54 -90.27 -0.23 -1.80 16 3 H 0.08 1.47 7.10 -51.93 -0.37 1.10 16 4 C -0.12 -1.34 5.43 -26.69 -0.14 -1.48 16 5 C -0.14 -1.31 5.74 -26.61 -0.15 -1.46 16 6 C 0.11 1.02 6.35 -3.72 -0.02 0.99 16 7 N -0.60 -8.36 2.40 -164.97 -0.40 -8.76 16 8 C 0.49 7.50 7.56 -10.99 -0.08 7.41 16 9 O -0.50 -9.99 11.95 5.56 0.07 -9.92 16 10 C 0.10 1.09 4.17 -5.20 -0.02 1.06 16 11 N -0.60 -6.99 2.39 -182.96 -0.44 -7.43 16 12 C 0.08 0.68 9.85 59.85 0.59 1.27 16 13 C 0.55 7.69 7.37 -10.99 -0.08 7.61 16 14 O -0.53 -9.45 15.92 5.56 0.09 -9.37 16 15 C -0.19 -2.07 4.82 -91.77 -0.44 -2.51 16 16 C -0.15 -1.63 10.24 -26.69 -0.27 -1.90 16 17 C -0.15 -1.54 10.05 -26.70 -0.27 -1.81 16 18 C 0.14 2.41 2.79 -67.37 -0.19 2.23 16 19 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 20 C 0.16 3.67 3.61 -4.04 -0.01 3.66 16 21 N -0.76 -19.48 5.05 -59.90 -0.30 -19.79 16 22 C -0.23 -6.84 10.47 -15.06 -0.16 -7.00 16 23 H 0.09 2.92 8.06 -52.49 -0.42 2.50 16 24 C 0.00 -0.04 5.50 -17.43 -0.10 -0.14 16 25 N -0.94 -30.87 13.97 55.49 0.78 -30.09 16 26 Si 0.89 23.13 28.02 -169.99 -4.76 18.37 16 27 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 28 H -0.29 -7.71 7.11 56.52 0.40 -7.30 16 29 H -0.28 -6.76 6.14 56.52 0.35 -6.41 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.48 6.42 -51.93 -0.33 1.14 16 32 H 0.05 0.84 5.97 -51.93 -0.31 0.53 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.79 6.34 -51.93 -0.33 0.46 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.54 5.92 -51.93 -0.31 0.23 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.74 7.84 -51.93 -0.41 0.33 16 40 H 0.11 1.16 7.13 -51.93 -0.37 0.79 16 41 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.08 0.61 6.94 -51.93 -0.36 0.25 16 43 H 0.07 0.57 8.03 -51.93 -0.42 0.15 16 44 H 0.12 0.93 7.36 -51.93 -0.38 0.55 16 45 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 46 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.11 1.30 7.67 -51.93 -0.40 0.91 16 49 H 0.05 1.32 6.25 -51.93 -0.32 0.99 16 50 H 0.04 1.06 5.54 -51.93 -0.29 0.77 16 51 H 0.36 8.75 4.41 -40.82 -0.18 8.57 16 52 H 0.26 8.01 8.31 -40.82 -0.34 7.67 16 LS Contribution 395.46 15.07 5.96 5.96 Total: -1.00 -38.44 395.46 -8.91 -47.35 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -8.62 Total: 9.64 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -1.28 Total: 4.04 kcal Atomic # 7 Polarization: -65.70 SS G_CDS: -0.36 Total: -66.06 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: 0.15 Total: -19.29 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -4.76 Total: 18.37 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -38.44 -8.91 -47.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715474428.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.368 kcal (2) G-P(sol) polarization free energy of solvation -38.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds