Wall clock time and date at job start Tue Mar 31 2020 22:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.49817 * 2 1 4 4 C 1.53041 * 109.49812 * 120.05986 * 2 1 3 5 5 C 1.53041 * 109.53520 * 58.61861 * 4 2 1 6 6 C 1.53187 * 109.31354 * 61.36687 * 5 4 2 7 7 N 1.46921 * 108.77650 * 305.36549 * 6 5 4 8 8 C 1.34782 * 120.62979 * 233.58497 * 7 6 5 9 9 O 1.21280 * 119.99778 * 185.56744 * 8 7 6 10 10 C 1.50692 * 120.00139 * 5.57399 * 8 7 6 11 11 N 1.46499 * 109.47531 * 174.99301 * 10 8 7 12 12 C 1.46502 * 120.00489 * 94.91869 * 11 10 8 13 13 C 1.34780 * 119.99731 * 274.92965 * 11 10 8 14 14 O 1.21277 * 120.00046 * 359.97438 * 13 11 10 15 15 C 1.50695 * 119.99732 * 179.97438 * 13 11 10 16 16 C 1.53002 * 117.49870 * 248.74035 * 15 13 11 17 17 C 1.53002 * 117.49820 * 180.08460 * 15 13 11 18 18 C 1.46922 * 118.74069 * 53.85893 * 7 6 5 19 19 H 1.09002 * 109.58842 * 65.92651 * 18 7 6 20 20 C 1.53005 * 109.59028 * 186.35674 * 18 7 6 21 21 N 1.46503 * 109.47294 * 178.05546 * 20 18 7 22 22 C 1.36931 * 120.00005 * 185.04024 * 21 20 18 23 23 H 1.08002 * 120.00057 * 4.99574 * 22 21 20 24 24 C 1.38811 * 120.00083 * 184.99654 * 22 21 20 25 25 N 1.31620 * 119.99912 * 184.93415 * 24 22 21 26 26 Si 1.86798 * 119.99861 * 4.93930 * 24 22 21 27 27 H 1.48490 * 109.47796 * 94.83601 * 26 24 22 28 28 H 1.48503 * 109.46828 * 214.83858 * 26 24 22 29 29 H 1.48501 * 109.47322 * 334.83172 * 26 24 22 30 30 H 1.09001 * 109.47306 * 299.94179 * 1 2 3 31 31 H 1.09002 * 109.47109 * 59.94112 * 1 2 3 32 32 H 1.09002 * 109.47145 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.45945 * 298.60204 * 4 2 1 34 34 H 1.08996 * 109.45005 * 178.63407 * 4 2 1 35 35 H 1.09006 * 109.50027 * 301.41484 * 5 4 2 36 36 H 1.09007 * 109.49856 * 181.31925 * 5 4 2 37 37 H 1.09001 * 109.58618 * 185.57638 * 6 5 4 38 38 H 1.09000 * 109.58523 * 65.15120 * 6 5 4 39 39 H 1.09007 * 109.47128 * 294.98683 * 10 8 7 40 40 H 1.08997 * 109.47637 * 54.98656 * 10 8 7 41 41 H 1.09003 * 109.46621 * 95.12957 * 12 11 10 42 42 H 1.08996 * 109.47437 * 215.13602 * 12 11 10 43 43 H 1.09000 * 109.46547 * 335.13848 * 12 11 10 44 44 H 1.09004 * 115.55712 * 34.41029 * 15 13 11 45 45 H 1.08999 * 117.49749 * 0.02562 * 16 15 13 46 46 H 1.09003 * 117.50035 * 145.02003 * 16 15 13 47 47 H 1.09001 * 117.50121 * 214.97684 * 17 15 13 48 48 H 1.09002 * 117.49799 * 359.96952 * 17 15 13 49 49 H 1.09006 * 109.46595 * 298.05473 * 20 18 7 50 50 H 1.09000 * 109.47155 * 58.05234 * 20 18 7 51 51 H 0.97002 * 119.99948 * 5.04120 * 21 20 18 52 52 H 0.97001 * 119.99397 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7226 1.2486 5 6 1.5036 -2.1556 1.2663 6 6 2.0153 -2.9037 0.0314 7 7 1.6529 -2.1383 -1.1691 8 6 0.9767 -2.7227 -2.1780 9 8 0.7715 -2.1110 -3.2049 10 6 0.4755 -4.1361 -2.0300 11 7 -0.3235 -4.4965 -3.2038 12 6 0.2996 -5.2046 -4.3248 13 6 -1.6318 -4.1763 -3.2526 14 8 -2.1477 -3.5904 -2.3245 15 6 -2.4536 -4.5465 -4.4603 16 6 -2.9445 -3.4080 -5.3567 17 6 -3.9323 -4.1536 -4.4561 18 6 2.0469 -0.7253 -1.2517 19 1 3.1334 -0.6510 -1.2979 20 6 1.4331 -0.0938 -2.5029 21 7 1.7892 1.3262 -2.5582 22 6 1.2656 2.1257 -3.5388 23 1 0.5286 1.7300 -4.2220 24 6 1.6820 3.4448 -3.6549 25 7 1.1097 4.2407 -4.5332 26 14 3.0546 4.0902 -2.5646 27 1 4.3491 3.9863 -3.2846 28 1 2.7899 5.5114 -2.2248 29 1 3.1159 3.2863 -1.3176 30 1 -0.3634 0.5129 0.8905 31 1 -0.3633 0.5148 -0.8895 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6982 -0.1954 2.1390 34 1 3.1305 -0.7434 1.2356 35 1 0.4138 -2.1358 1.2541 36 1 1.8486 -2.6624 2.1676 37 1 1.5572 -3.8918 -0.0131 38 1 3.0993 -3.0035 0.0877 39 1 1.3238 -4.8154 -1.9455 40 1 -0.1407 -4.2112 -1.1340 41 1 0.1383 -6.2767 -4.2120 42 1 -0.1456 -4.8666 -5.2606 43 1 1.3696 -4.9973 -4.3358 44 1 -2.1839 -5.4862 -4.9425 45 1 -2.6727 -2.3912 -5.0731 46 1 -2.9980 -3.5986 -6.4286 47 1 -4.6354 -4.8346 -4.9358 48 1 -4.3108 -3.6279 -3.5795 49 1 1.8155 -0.5992 -3.3898 50 1 0.3484 -0.1952 -2.4663 51 1 2.3960 1.7000 -1.9002 52 1 1.4010 5.1623 -4.6145 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715474428.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:40 Heat of formation + Delta-G solvation = -28.318118 kcal Electronic energy + Delta-G solvation = -31772.064092 eV Core-core repulsion = 27772.904008 eV Total energy + Delta-G solvation = -3999.160084 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.98576 -40.96580 -38.88111 -37.22856 -36.83219 -36.40754 -34.67600 -33.88702 -32.19276 -30.53762 -28.52191 -27.55000 -27.39070 -25.74208 -24.70742 -24.27723 -23.37874 -22.49841 -21.45769 -19.95714 -19.94126 -19.32462 -18.53764 -18.12517 -17.52270 -17.04340 -16.54175 -16.43854 -16.07488 -15.89461 -15.72290 -15.46725 -15.18318 -15.10025 -14.84076 -14.71038 -14.51728 -14.11167 -13.84594 -13.78528 -13.57489 -13.45073 -13.32924 -13.25976 -12.90474 -12.84418 -12.65943 -12.50919 -12.44206 -12.14853 -12.00878 -11.94552 -11.83843 -11.56136 -11.48566 -11.41758 -11.27502 -11.05211 -10.96262 -10.49087 -9.65374 -9.55797 -9.22691 -8.06042 -5.39496 1.30171 1.31280 1.38389 1.45129 1.63190 1.80190 2.14279 2.44844 2.89711 3.23664 3.42788 3.50125 3.74375 3.78856 3.82596 3.82793 3.88825 3.92087 4.06921 4.10081 4.16530 4.19108 4.26127 4.30279 4.34448 4.46861 4.58701 4.65431 4.68570 4.72109 4.73753 4.82689 4.83965 4.90229 4.93829 4.97767 5.01264 5.11093 5.16406 5.17141 5.22868 5.29368 5.32354 5.39193 5.52251 5.66680 5.71579 6.17237 6.25264 6.46506 7.03019 7.07232 7.26036 7.79145 8.04098 9.16753 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010222 B = 0.004177 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.574891 B = 6700.986433 C = 8418.959693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.099 4.099 3 H 0.063 0.937 4 C -0.108 4.108 5 C -0.134 4.134 6 C 0.101 3.899 7 N -0.601 5.601 8 C 0.480 3.520 9 O -0.565 6.565 10 C 0.103 3.897 11 N -0.599 5.599 12 C 0.077 3.923 13 C 0.534 3.466 14 O -0.586 6.586 15 C -0.188 4.188 16 C -0.159 4.159 17 C -0.143 4.143 18 C 0.150 3.850 19 H 0.080 0.920 20 C 0.179 3.821 21 N -0.756 5.756 22 C -0.232 4.232 23 H 0.034 0.966 24 C -0.066 4.066 25 N -0.987 5.987 26 Si 0.968 3.032 27 H -0.277 1.277 28 H -0.290 1.290 29 H -0.247 1.247 30 H 0.062 0.938 31 H 0.018 0.982 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.096 0.904 39 H 0.156 0.844 40 H 0.111 0.889 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.164 0.836 45 H 0.058 0.942 46 H 0.134 0.866 47 H 0.139 0.861 48 H 0.078 0.922 49 H 0.027 0.973 50 H 0.005 0.995 51 H 0.365 0.635 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.796 -28.734 10.893 30.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.118 4.118 3 H 0.081 0.919 4 C -0.146 4.146 5 C -0.172 4.172 6 C -0.020 4.020 7 N -0.336 5.336 8 C 0.268 3.732 9 O -0.443 6.443 10 C -0.023 4.023 11 N -0.330 5.330 12 C -0.064 4.064 13 C 0.325 3.675 14 O -0.466 6.466 15 C -0.208 4.208 16 C -0.196 4.196 17 C -0.181 4.181 18 C 0.045 3.955 19 H 0.098 0.902 20 C 0.054 3.946 21 N -0.404 5.404 22 C -0.363 4.363 23 H 0.052 0.948 24 C -0.257 4.257 25 N -0.638 5.638 26 Si 0.794 3.206 27 H -0.203 1.203 28 H -0.216 1.216 29 H -0.172 1.172 30 H 0.081 0.919 31 H 0.037 0.963 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.114 0.886 39 H 0.174 0.826 40 H 0.129 0.871 41 H 0.114 0.886 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.181 0.819 45 H 0.077 0.923 46 H 0.152 0.848 47 H 0.157 0.843 48 H 0.097 0.903 49 H 0.044 0.956 50 H 0.023 0.977 51 H 0.200 0.800 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.311 -28.143 10.648 30.118 hybrid contribution 0.336 1.630 -0.106 1.668 sum 1.647 -26.512 10.543 28.579 Atomic orbital electron populations 1.21699 0.95981 1.00951 1.00324 1.21519 0.95758 0.99229 0.95295 0.91856 1.21551 1.01249 0.96092 0.95672 1.21980 1.01056 0.95405 0.98764 1.22166 1.02153 0.95313 0.82342 1.48217 1.56013 1.10152 1.19223 1.21983 0.77550 0.90593 0.83057 1.90825 1.57581 1.65070 1.30788 1.21557 0.98149 0.92108 0.90520 1.47509 1.08154 1.57332 1.19993 1.22075 0.99115 0.97316 0.87895 1.20364 0.82441 0.76989 0.87755 1.90663 1.72644 1.42937 1.40392 1.22313 0.97726 1.02882 0.97905 1.22936 1.03135 0.94717 0.98842 1.23021 0.90589 1.02941 1.01515 1.21392 0.98387 0.80968 0.94708 0.90222 1.21065 0.96165 0.81898 0.95491 1.42890 1.57016 1.06738 1.33791 1.18865 1.17015 0.93040 1.07351 0.94799 1.25625 1.02919 0.96143 1.01014 1.69932 1.46442 1.06595 1.40794 0.85223 0.78939 0.77201 0.79252 1.20307 1.21643 1.17201 0.91910 0.96325 0.92769 0.90724 0.90197 0.92475 0.87207 0.87036 0.88622 0.82630 0.87138 0.88637 0.91011 0.90328 0.81895 0.92343 0.84793 0.84328 0.90313 0.95558 0.97672 0.80011 0.93208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.64 8.21 71.98 0.59 -4.05 16 2 C -0.10 -3.03 2.54 -10.57 -0.03 -3.05 16 3 H 0.06 2.19 7.10 -2.39 -0.02 2.17 16 4 C -0.11 -2.11 5.43 30.62 0.17 -1.94 16 5 C -0.13 -1.97 5.74 30.67 0.18 -1.79 16 6 C 0.10 1.44 6.35 86.36 0.55 1.99 16 7 N -0.60 -15.91 2.40 -794.24 -1.91 -17.82 16 8 C 0.48 14.77 7.56 87.65 0.66 15.44 16 9 O -0.56 -24.22 11.95 -3.03 -0.04 -24.26 16 10 C 0.10 2.08 4.17 85.63 0.36 2.44 16 11 N -0.60 -13.45 2.39 -851.14 -2.04 -15.48 16 12 C 0.08 1.07 9.85 127.77 1.26 2.33 16 13 C 0.53 15.33 7.37 87.66 0.65 15.97 16 14 O -0.59 -22.18 15.92 -3.02 -0.05 -22.23 16 15 C -0.19 -3.95 4.82 -11.54 -0.06 -4.00 16 16 C -0.16 -3.75 10.24 30.62 0.31 -3.43 16 17 C -0.14 -2.99 10.05 30.62 0.31 -2.68 16 18 C 0.15 5.07 2.79 45.12 0.13 5.19 16 19 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 20 C 0.18 8.61 3.61 86.38 0.31 8.92 16 21 N -0.76 -40.58 5.05 -343.43 -1.74 -42.32 16 22 C -0.23 -15.03 10.47 84.03 0.88 -14.15 16 23 H 0.03 2.50 8.06 -2.91 -0.02 2.48 16 24 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 25 N -0.99 -67.92 13.97 21.65 0.30 -67.62 16 26 Si 0.97 48.36 28.02 68.60 1.92 50.29 16 27 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 28 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 29 H -0.25 -10.92 6.14 99.48 0.61 -10.31 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.02 0.81 6.42 -2.39 -0.02 0.80 16 32 H 0.05 1.83 5.97 -2.39 -0.01 1.82 16 33 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 1.06 6.34 -2.38 -0.02 1.04 16 36 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.11 0.92 5.92 -2.39 -0.01 0.91 16 38 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.16 1.50 7.84 -2.38 -0.02 1.48 16 40 H 0.11 2.20 7.13 -2.39 -0.02 2.18 16 41 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.07 1.06 6.94 -2.39 -0.02 1.04 16 43 H 0.08 1.03 8.03 -2.39 -0.02 1.01 16 44 H 0.16 2.01 7.36 -2.38 -0.02 2.00 16 45 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 47 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.08 2.10 7.67 -2.39 -0.02 2.08 16 49 H 0.03 1.42 6.25 -2.38 -0.01 1.41 16 50 H 0.01 0.29 5.54 -2.39 -0.01 0.28 16 51 H 0.37 18.01 4.41 -92.71 -0.41 17.60 16 52 H 0.26 16.74 8.31 -92.71 -0.77 15.96 16 Total: -1.00 -96.63 395.46 3.61 -93.02 By element: Atomic # 1 Polarization: 32.59 SS G_CDS: 0.42 Total: 33.01 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 6.73 Total: 13.41 kcal Atomic # 7 Polarization: -137.86 SS G_CDS: -5.38 Total: -143.24 kcal Atomic # 8 Polarization: -46.40 SS G_CDS: -0.08 Total: -46.49 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 1.92 Total: 50.29 kcal Total: -96.63 3.61 -93.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715474428.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.702 kcal (2) G-P(sol) polarization free energy of solvation -96.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds