Wall clock time and date at job start Tue Mar 31 2020 21:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 110.53944 * 2 1 4 4 C 1.54270 * 110.48468 * 237.38910 * 2 1 3 5 5 C 1.53869 * 106.63967 * 217.73631 * 4 2 1 6 6 C 1.54268 * 106.60115 * 359.97438 * 5 4 2 7 7 H 1.09001 * 110.48482 * 264.93365 * 6 5 4 8 8 C 1.52998 * 110.48927 * 142.41919 * 6 5 4 9 9 C 1.50707 * 109.46921 * 66.45704 * 8 6 5 10 10 O 1.21279 * 119.99918 * 359.97438 * 9 8 6 11 11 N 1.34776 * 119.99835 * 180.02562 * 9 8 6 12 12 C 1.46495 * 120.00155 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.47414 * 179.97438 * 12 11 9 14 14 C 1.31001 * 119.99744 * 125.00320 * 13 12 11 15 15 C 1.50708 * 119.99607 * 180.02562 * 14 13 12 16 16 N 1.46896 * 109.46782 * 124.99908 * 15 14 13 17 17 C 1.46903 * 110.99737 * 179.97438 * 16 15 14 18 18 C 1.50704 * 109.47017 * 179.97438 * 17 16 15 19 19 O 1.21286 * 120.00038 * 359.97438 * 18 17 16 20 20 N 1.34780 * 119.99838 * 180.02562 * 18 17 16 21 21 C 1.37095 * 119.99898 * 180.02562 * 20 18 17 22 22 H 1.07996 * 119.99795 * 359.97438 * 21 20 18 23 23 C 1.38947 * 119.99686 * 179.97438 * 21 20 18 24 24 N 1.31418 * 119.99833 * 179.97438 * 23 21 20 25 25 Si 1.86790 * 120.00233 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47314 * 90.00125 * 25 23 21 27 27 H 1.48509 * 109.47138 * 210.00185 * 25 23 21 28 28 H 1.48502 * 109.47357 * 330.00137 * 25 23 21 29 29 C 1.54895 * 104.19476 * 23.60777 * 6 5 4 30 30 H 1.09001 * 109.47018 * 181.15784 * 1 2 3 31 31 H 1.09003 * 109.46788 * 301.15842 * 1 2 3 32 32 H 1.09002 * 109.46780 * 61.15815 * 1 2 3 33 33 H 1.09002 * 110.03399 * 98.42629 * 4 2 1 34 34 H 1.08995 * 110.02943 * 337.04529 * 4 2 1 35 35 H 1.08999 * 110.03405 * 119.26051 * 5 4 2 36 36 H 1.09001 * 110.03705 * 240.64196 * 5 4 2 37 37 H 1.09004 * 109.46958 * 186.45458 * 8 6 5 38 38 H 1.09000 * 109.47240 * 306.45887 * 8 6 5 39 39 H 0.97002 * 119.99846 * 359.97438 * 11 9 8 40 40 H 1.08993 * 109.47011 * 300.00171 * 12 11 9 41 41 H 1.09006 * 109.46729 * 59.99430 * 12 11 9 42 42 H 1.07996 * 119.99735 * 305.00136 * 13 12 11 43 43 H 1.07993 * 120.00075 * 359.97438 * 14 13 12 44 44 H 1.08999 * 109.46907 * 244.99496 * 15 14 13 45 45 H 1.08991 * 109.47042 * 4.99731 * 15 14 13 46 46 H 1.00891 * 111.00616 * 56.04267 * 16 15 14 47 47 H 1.09000 * 109.47072 * 299.99918 * 17 16 15 48 48 H 1.09001 * 109.47235 * 59.99981 * 17 16 15 49 49 H 0.97000 * 119.99486 * 359.97438 * 20 18 17 50 50 H 0.96998 * 119.99846 * 180.02562 * 24 23 21 51 51 H 1.09001 * 110.75082 * 80.37254 * 29 6 5 52 52 H 1.08998 * 110.75665 * 203.74259 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0699 -0.7788 -1.2173 5 6 3.3163 -1.5414 -0.7350 6 6 3.4916 -1.1994 0.7590 7 1 4.1913 -0.3726 0.8815 8 6 3.9728 -2.4261 1.5364 9 6 5.3652 -2.7900 1.0889 10 8 5.9179 -2.1331 0.2322 11 7 5.9957 -3.8460 1.6400 12 6 7.3489 -4.2001 1.2047 13 6 7.8230 -5.4083 1.9704 14 6 8.2384 -6.4706 1.3261 15 6 8.7119 -7.6791 2.0920 16 7 7.9560 -8.8613 1.6573 17 6 8.3921 -10.0613 2.3838 18 6 7.5958 -11.2509 1.9126 19 8 6.7480 -11.1125 1.0564 20 7 7.8249 -12.4683 2.4436 21 6 7.1008 -13.5505 2.0146 22 1 6.3466 -13.4274 1.2516 23 6 7.3375 -14.8057 2.5616 24 7 6.6430 -15.8430 2.1508 25 14 8.6426 -15.0186 3.8809 26 1 8.0296 -14.8249 5.2195 27 1 9.2172 -16.3852 3.7927 28 1 9.7186 -14.0152 3.6793 29 6 2.0735 -0.7825 1.2221 30 1 -0.3633 -1.0275 0.0208 31 1 -0.3633 0.5317 0.8794 32 1 -0.3633 0.4958 -0.9002 33 1 2.3412 -0.0858 -2.0137 34 1 1.3173 -1.4816 -1.5746 35 1 3.1682 -2.6143 -0.8575 36 1 4.1923 -1.2191 -1.2979 37 1 3.9813 -2.2002 2.6027 38 1 3.3002 -3.2628 1.3475 39 1 5.5534 -4.3716 2.3249 40 1 7.3401 -4.4257 0.1384 41 1 8.0218 -3.3635 1.3935 42 1 7.8203 -5.3984 3.0503 43 1 8.2406 -6.4806 0.2462 44 1 9.7736 -7.8366 1.9019 45 1 8.5536 -7.5184 3.1583 46 1 8.0343 -8.9942 0.6603 47 1 9.4515 -10.2351 2.1954 48 1 8.2320 -9.9175 3.4523 49 1 8.5027 -12.5788 3.1287 50 1 6.8080 -16.7192 2.5330 51 1 1.4590 -1.6602 1.4224 52 1 2.1275 -0.1389 2.1002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716332458.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:56 Heat of formation + Delta-G solvation = -79.225254 kcal Electronic energy + Delta-G solvation = -27306.164656 eV Core-core repulsion = 23304.797074 eV Total energy + Delta-G solvation = -4001.367583 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.23869 -38.59013 -38.49127 -36.80699 -35.28594 -33.97931 -33.15140 -32.72396 -31.67520 -30.04729 -28.82236 -27.54154 -26.07223 -24.55903 -23.86458 -22.56010 -21.04749 -20.45914 -20.23956 -19.62633 -19.31236 -18.33412 -17.25453 -16.58073 -16.43247 -16.09144 -15.70626 -15.51689 -14.99476 -14.61689 -14.54544 -14.51224 -14.15716 -13.88922 -13.77964 -13.63982 -13.39784 -13.30310 -13.13496 -12.66198 -12.62428 -12.31102 -12.23248 -12.10432 -11.83525 -11.75467 -11.40210 -11.26591 -11.19887 -11.18373 -11.05743 -10.95337 -10.89403 -10.64407 -10.61783 -10.12320 -9.99782 -9.60256 -9.57997 -9.21338 -8.62732 -8.21902 -8.16670 -6.33153 -3.84775 1.78750 2.43535 3.00265 3.04908 3.11133 3.13218 3.71172 4.07573 4.14028 4.19298 4.21011 4.35680 4.53560 4.65794 4.76791 4.80822 4.87238 4.87510 5.06563 5.12053 5.17202 5.20581 5.22984 5.25420 5.26278 5.29469 5.34923 5.38617 5.43212 5.44667 5.55794 5.59670 5.61345 5.63738 5.70696 5.75898 5.81087 5.85052 5.89805 6.00306 6.09696 6.15359 6.18536 6.37542 6.52804 7.01364 7.25967 7.49953 7.56032 8.00033 8.12178 8.57457 8.92730 9.40060 9.80081 10.79953 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016600 B = 0.001398 C = 0.001324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.374195 B =20027.491689 C =21135.469483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.072 0.928 4 C -0.123 4.123 5 C -0.115 4.115 6 C -0.075 4.075 7 H 0.080 0.920 8 C -0.135 4.135 9 C 0.511 3.489 10 O -0.540 6.540 11 N -0.729 5.729 12 C 0.153 3.847 13 C -0.182 4.182 14 C -0.112 4.112 15 C 0.083 3.917 16 N -0.665 5.665 17 C 0.047 3.953 18 C 0.449 3.551 19 O -0.564 6.564 20 N -0.590 5.590 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.270 1.270 29 C -0.117 4.117 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.403 0.597 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.039 0.961 45 H 0.077 0.923 46 H 0.352 0.648 47 H 0.045 0.955 48 H 0.088 0.912 49 H 0.371 0.629 50 H 0.273 0.727 51 H 0.070 0.930 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.596 31.010 2.285 31.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.091 0.909 4 C -0.160 4.160 5 C -0.152 4.152 6 C -0.094 4.094 7 H 0.099 0.901 8 C -0.175 4.175 9 C 0.298 3.702 10 O -0.417 6.417 11 N -0.381 5.381 12 C 0.030 3.970 13 C -0.201 4.201 14 C -0.132 4.132 15 C -0.046 4.046 16 N -0.298 5.298 17 C -0.085 4.085 18 C 0.235 3.765 19 O -0.446 6.446 20 N -0.230 5.230 21 C -0.435 4.435 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.521 5.521 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 C -0.155 4.155 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.238 0.762 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.134 0.866 43 H 0.131 0.869 44 H 0.057 0.943 45 H 0.095 0.905 46 H 0.171 0.829 47 H 0.063 0.937 48 H 0.106 0.894 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.088 0.912 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.342 31.447 1.495 31.659 hybrid contribution 1.770 -0.978 1.069 2.287 sum -1.572 30.468 2.564 30.617 Atomic orbital electron populations 1.21810 0.95046 1.01840 1.01498 1.21961 0.95363 0.99252 0.95034 0.90934 1.22249 0.97464 0.98853 0.97456 1.22152 0.97844 0.99894 0.95338 1.21729 0.96390 0.96409 0.94877 0.90123 1.21781 0.93663 1.00180 1.01905 1.20765 0.88091 0.79782 0.81580 1.90693 1.67776 1.51651 1.31561 1.46075 1.17271 1.31643 1.43091 1.20278 0.82948 0.95527 0.98270 1.22746 1.02494 0.94943 0.99952 1.22868 0.96883 0.93410 1.00014 1.21085 0.95135 0.89093 0.99323 1.60115 1.57226 1.01384 1.11041 1.21727 0.96898 0.90315 0.99600 1.19692 0.87198 0.83552 0.86073 1.90568 1.35704 1.84478 1.33864 1.42203 1.35721 1.07771 1.37263 1.19437 1.17528 0.84561 1.21953 0.86279 1.25039 0.97811 0.95209 0.98064 1.69625 1.40113 0.99849 1.42488 0.86663 0.81645 0.78596 0.82412 1.19590 1.20169 1.19550 1.22669 0.95452 0.99873 0.97459 0.92560 0.92790 0.92784 0.92116 0.91867 0.92244 0.90985 0.88892 0.88657 0.76233 0.91179 0.91007 0.86601 0.86907 0.94278 0.90485 0.82852 0.93665 0.89421 0.79678 0.91595 0.91163 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.11 37.16 0.34 -0.45 16 2 C -0.10 -0.61 3.46 -88.92 -0.31 -0.92 16 3 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 4 C -0.12 -0.88 6.37 -25.61 -0.16 -1.04 16 5 C -0.11 -0.98 5.39 -25.62 -0.14 -1.11 16 6 C -0.08 -0.56 2.47 -88.96 -0.22 -0.78 16 7 H 0.08 0.69 8.02 -51.93 -0.42 0.28 16 8 C -0.14 -0.90 5.10 -27.88 -0.14 -1.04 16 9 C 0.51 4.90 7.61 -10.98 -0.08 4.81 16 10 O -0.54 -7.11 14.79 5.56 0.08 -7.02 16 11 N -0.73 -6.02 5.55 -61.47 -0.34 -6.36 16 12 C 0.15 1.36 6.11 -5.20 -0.03 1.32 16 13 C -0.18 -1.53 9.24 -36.03 -0.33 -1.86 16 14 C -0.11 -1.08 9.38 -36.02 -0.34 -1.42 16 15 C 0.08 0.89 6.13 -4.97 -0.03 0.86 16 16 N -0.66 -9.91 6.11 -116.34 -0.71 -10.62 16 17 C 0.05 0.76 6.17 -4.97 -0.03 0.73 16 18 C 0.45 10.08 7.82 -10.98 -0.09 9.99 16 19 O -0.56 -15.09 15.78 5.55 0.09 -15.00 16 20 N -0.59 -13.91 5.09 -10.96 -0.06 -13.96 16 21 C -0.31 -8.62 10.16 -14.94 -0.15 -8.77 16 22 H 0.12 3.84 7.39 -52.49 -0.39 3.46 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.60 13.96 55.50 0.77 -24.82 16 25 Si 0.88 19.14 27.73 -169.99 -4.71 14.43 16 26 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 27 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 28 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 29 C -0.12 -0.70 5.76 -24.70 -0.14 -0.84 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.44 7.84 -51.93 -0.41 0.03 16 35 H 0.06 0.53 7.77 -51.93 -0.40 0.13 16 36 H 0.07 0.74 7.60 -51.93 -0.39 0.35 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.10 0.55 8.05 -51.93 -0.42 0.13 16 39 H 0.40 2.53 8.46 -40.82 -0.35 2.18 16 40 H 0.07 0.70 7.79 -51.93 -0.40 0.30 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.12 0.86 7.84 -52.49 -0.41 0.44 16 43 H 0.11 1.08 7.84 -52.49 -0.41 0.66 16 44 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 0.77 7.79 -51.93 -0.40 0.36 16 46 H 0.35 5.46 8.42 -39.30 -0.33 5.13 16 47 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 49 H 0.37 7.61 5.76 -40.82 -0.24 7.38 16 50 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 51 H 0.07 0.40 7.98 -51.93 -0.41 -0.02 16 52 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 421.96 15.07 6.36 6.36 Total: -1.00 -34.18 421.96 -9.68 -43.86 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -9.20 Total: 12.62 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -1.96 Total: 0.52 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.33 Total: -55.76 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: 0.17 Total: -22.03 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.71 Total: 14.43 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -34.18 -9.68 -43.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716332458.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.362 kcal (2) G-P(sol) polarization free energy of solvation -34.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds