Wall clock time and date at job start Tue Mar 31 2020 20:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50692 * 109.47225 * 2 1 4 4 O 1.21279 * 120.00343 * 0.02562 * 3 2 1 5 5 N 1.34778 * 120.00105 * 179.97438 * 3 2 1 6 6 C 1.46497 * 120.00490 * 179.97438 * 5 3 2 7 7 H 1.09001 * 109.46987 * 35.00210 * 6 5 3 8 8 C 1.53004 * 109.47257 * 275.00164 * 6 5 3 9 9 C 1.50699 * 109.47229 * 155.00240 * 6 5 3 10 10 O 1.21278 * 120.00271 * 10.37548 * 9 6 5 11 11 N 1.34779 * 119.99448 * 190.38058 * 9 6 5 12 12 C 1.47351 * 125.78033 * 4.14368 * 11 9 6 13 13 C 1.54466 * 107.33374 * 178.99030 * 12 11 9 14 14 C 1.54374 * 102.87320 * 338.51051 * 13 12 11 15 15 C 1.47580 * 125.62382 * 184.14779 * 11 9 6 16 16 C 1.52108 * 110.56479 * 152.60236 * 14 13 12 17 17 C 1.53340 * 109.43712 * 182.79599 * 16 14 13 18 18 N 1.46924 * 108.69327 * 306.69893 * 17 16 14 19 19 C 1.36942 * 120.55406 * 234.32329 * 18 17 16 20 20 H 1.07996 * 119.99859 * 26.74022 * 19 18 17 21 21 C 1.38808 * 119.99738 * 206.73080 * 19 18 17 22 22 N 1.31617 * 120.00420 * 16.75861 * 21 19 18 23 23 Si 1.86803 * 120.00038 * 196.75691 * 21 19 18 24 24 H 1.48501 * 109.47279 * 90.00059 * 23 21 19 25 25 H 1.48500 * 109.47413 * 210.00487 * 23 21 19 26 26 H 1.48501 * 109.46807 * 330.00413 * 23 21 19 27 27 C 1.46943 * 118.89555 * 54.34802 * 18 17 16 28 28 C 1.52109 * 110.55002 * 276.69289 * 14 13 12 29 29 H 1.09006 * 109.46719 * 299.99891 * 1 2 3 30 30 H 1.09000 * 109.46740 * 59.99896 * 1 2 3 31 31 H 1.08994 * 109.47220 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46814 * 239.99498 * 2 1 3 33 33 H 1.09000 * 109.46740 * 120.00104 * 2 1 3 34 34 H 0.97005 * 119.99814 * 359.97438 * 5 3 2 35 35 H 1.09002 * 109.46873 * 65.88054 * 8 6 5 36 36 H 1.08997 * 109.47262 * 185.88113 * 8 6 5 37 37 H 1.08998 * 109.47183 * 305.88687 * 8 6 5 38 38 H 1.09001 * 109.85155 * 59.56352 * 12 11 9 39 39 H 1.08991 * 109.99524 * 298.50038 * 12 11 9 40 40 H 1.09000 * 110.73500 * 220.16361 * 13 12 11 41 41 H 1.08997 * 110.73426 * 96.85461 * 13 12 11 42 42 H 1.08998 * 110.37480 * 84.46666 * 15 11 9 43 43 H 1.08994 * 110.37578 * 322.23189 * 15 11 9 44 44 H 1.08997 * 109.47494 * 302.78704 * 16 14 13 45 45 H 1.08994 * 109.47601 * 62.80606 * 16 14 13 46 46 H 1.09001 * 109.59792 * 186.94169 * 17 16 14 47 47 H 1.08998 * 109.60306 * 66.46471 * 17 16 14 48 48 H 0.97003 * 120.00685 * 179.97438 * 22 21 19 49 49 H 1.08999 * 109.60388 * 185.89653 * 27 18 17 50 50 H 1.08993 * 109.73410 * 65.48847 * 27 18 17 51 51 H 1.08995 * 109.47715 * 297.18152 * 28 14 13 52 52 H 1.09007 * 109.47231 * 57.19161 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2444 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 6 3.8459 3.0481 0.0000 7 1 3.1731 3.6717 0.5887 8 6 3.8981 3.5701 -1.4374 9 6 5.2271 3.0928 0.6010 10 8 5.8278 2.0617 0.8176 11 7 5.7947 4.2786 0.8979 12 6 5.1513 5.5980 0.7694 13 6 6.1709 6.6556 1.2467 14 6 7.1327 5.8323 2.1299 15 6 7.1666 4.4716 1.4066 16 6 8.5158 6.4651 2.1476 17 6 9.4666 5.5905 2.9737 18 7 8.8655 5.3588 4.2942 19 6 9.5585 5.6581 5.4367 20 1 10.3179 6.4259 5.4222 21 6 9.2849 4.9747 6.6135 22 7 8.6193 3.8398 6.5761 23 14 9.8613 5.6657 8.2506 24 1 8.8095 6.5510 8.8121 25 1 10.1244 4.5495 9.1940 26 1 11.1082 6.4460 8.0469 27 6 7.5085 4.8001 4.3685 28 6 6.5690 5.6793 3.5344 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.9878 0.9297 0.0013 35 1 2.8861 3.6363 -1.8368 36 1 4.3586 4.5580 -1.4487 37 1 4.4867 2.8878 -2.0505 38 1 4.2581 5.6365 1.3930 39 1 4.8850 5.7830 -0.2711 40 1 5.6771 7.4308 1.8326 41 1 6.7015 7.0900 0.3994 42 1 7.8773 4.4984 0.5807 43 1 7.4276 3.6767 2.1053 44 1 8.8911 6.5467 1.1275 45 1 8.4555 7.4579 2.5933 46 1 10.4227 6.1004 3.0916 47 1 9.6180 4.6367 2.4684 48 1 8.4284 3.3620 7.3984 49 1 7.1738 4.7889 5.4058 50 1 7.5064 3.7846 3.9726 51 1 6.4814 6.6610 3.9997 52 1 5.5852 5.2127 3.4823 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716726518.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:51 Heat of formation + Delta-G solvation = -56.319876 kcal Electronic energy + Delta-G solvation = -30852.521801 eV Core-core repulsion = 26852.147470 eV Total energy + Delta-G solvation = -4000.374331 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.77617 -39.83560 -38.48240 -35.93272 -35.16192 -33.30906 -33.03275 -31.33634 -30.53798 -30.01663 -29.34274 -26.81582 -25.52850 -24.77632 -23.42517 -22.60610 -22.26734 -20.73062 -20.48103 -19.48563 -18.22813 -17.81218 -16.75659 -16.54786 -16.25232 -16.03705 -15.70166 -14.90526 -14.80632 -14.65666 -14.15061 -13.95958 -13.76929 -13.65956 -13.35097 -13.22679 -13.08458 -12.83865 -12.76146 -12.57984 -12.34175 -12.29094 -12.00814 -11.92384 -11.84090 -11.66382 -11.41828 -11.35356 -11.16457 -10.87941 -10.73525 -10.47084 -10.21574 -10.18469 -10.08713 -9.89066 -9.82598 -9.54059 -9.43182 -9.31926 -8.58877 -8.44358 -6.67196 -5.76922 -3.19581 2.38764 2.56125 2.65572 3.21852 3.38024 3.44881 3.46185 4.22668 4.49266 4.50122 4.63087 4.76160 4.78955 4.82778 4.86699 4.89977 4.96638 5.22400 5.29494 5.30143 5.39795 5.40906 5.47481 5.50915 5.55674 5.64454 5.67088 5.71128 5.85109 5.88399 5.94364 5.94777 6.02297 6.04812 6.13171 6.22284 6.26954 6.29571 6.46214 6.59917 6.64309 6.73041 6.84009 6.95737 7.29360 7.37738 7.50033 7.70518 7.80086 7.99814 8.07985 8.45711 9.22115 9.85922 10.41314 11.30734 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015481 B = 0.002760 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.260213 B =10141.185524 C =11227.401062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.144 4.144 3 C 0.515 3.485 4 O -0.543 6.543 5 N -0.715 5.715 6 C 0.128 3.872 7 H 0.110 0.890 8 C -0.159 4.159 9 C 0.524 3.476 10 O -0.536 6.536 11 N -0.608 5.608 12 C 0.096 3.904 13 C -0.126 4.126 14 C -0.056 4.056 15 C 0.115 3.885 16 C -0.117 4.117 17 C 0.143 3.857 18 N -0.591 5.591 19 C -0.251 4.251 20 H 0.066 0.934 21 C 0.000 4.000 22 N -0.902 5.902 23 Si 0.902 3.098 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.279 1.279 27 C 0.169 3.831 28 C -0.125 4.125 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.411 0.589 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.091 0.909 44 H 0.053 0.947 45 H 0.064 0.936 46 H 0.054 0.946 47 H 0.018 0.982 48 H 0.254 0.746 49 H 0.091 0.909 50 H 0.018 0.982 51 H 0.058 0.942 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.988 -0.946 -17.208 20.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.184 4.184 3 C 0.302 3.698 4 O -0.421 6.421 5 N -0.369 5.369 6 C 0.020 3.980 7 H 0.128 0.872 8 C -0.217 4.217 9 C 0.311 3.689 10 O -0.413 6.413 11 N -0.341 5.341 12 C -0.027 4.027 13 C -0.164 4.164 14 C -0.057 4.057 15 C -0.007 4.007 16 C -0.156 4.156 17 C 0.016 3.984 18 N -0.314 5.314 19 C -0.380 4.380 20 H 0.084 0.916 21 C -0.198 4.198 22 N -0.547 5.547 23 Si 0.732 3.268 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.205 1.205 27 C 0.043 3.957 28 C -0.164 4.164 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.248 0.752 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.109 0.891 44 H 0.071 0.929 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.036 0.964 48 H 0.064 0.936 49 H 0.110 0.890 50 H 0.036 0.964 51 H 0.077 0.923 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.284 -1.030 -16.955 20.963 hybrid contribution 0.596 0.015 0.896 1.077 sum -11.688 -1.015 -16.059 19.888 Atomic orbital electron populations 1.21530 0.92894 1.01620 1.03359 1.21629 0.98655 0.93435 1.04676 1.20829 0.81621 0.92126 0.75210 1.90693 1.55269 1.46526 1.49568 1.45869 1.07622 1.08007 1.75441 1.20686 0.93468 0.85475 0.98386 0.87226 1.22143 1.03520 1.01811 0.94238 1.20122 0.87536 0.82697 0.78508 1.90713 1.64401 1.32299 1.53929 1.48514 1.15847 1.05451 1.64322 1.22272 0.96894 0.82660 1.00836 1.22732 0.96780 0.97030 0.99858 1.21011 0.95919 0.93074 0.95673 1.22423 0.81494 0.99039 0.97724 1.21854 0.94243 1.00164 0.99389 1.20946 0.94473 0.95724 0.87210 1.44062 1.12399 1.74682 1.00242 1.19207 1.17966 1.13790 0.87079 0.91610 1.25024 1.00702 0.95291 0.98799 1.70024 1.44369 1.13824 1.26495 0.86287 0.78405 0.78040 0.84020 1.21517 1.21807 1.20482 1.20865 0.82934 0.92023 0.99835 1.22008 0.98802 1.01706 0.93893 0.91911 0.92024 0.92031 0.88797 0.88598 0.75169 0.90821 0.90749 0.91723 0.91284 0.91272 0.89942 0.90743 0.91817 0.89081 0.92877 0.91722 0.92721 0.96417 0.93637 0.89046 0.96371 0.92313 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.20 37.16 0.34 -0.71 16 2 C -0.14 -1.10 6.42 -27.88 -0.18 -1.28 16 3 C 0.52 5.77 7.79 -10.99 -0.09 5.68 16 4 O -0.54 -7.81 15.64 5.56 0.09 -7.72 16 5 N -0.72 -7.94 5.01 -54.94 -0.28 -8.22 16 6 C 0.13 1.50 2.37 -69.08 -0.16 1.34 16 7 H 0.11 1.35 7.35 -51.93 -0.38 0.96 16 8 C -0.16 -1.49 9.41 37.16 0.35 -1.14 16 9 C 0.52 7.63 7.16 -10.99 -0.08 7.55 16 10 O -0.54 -9.61 16.08 5.56 0.09 -9.52 16 11 N -0.61 -8.42 3.33 -170.53 -0.57 -8.99 16 12 C 0.10 1.04 5.78 -2.81 -0.02 1.02 16 13 C -0.13 -1.42 5.89 -25.24 -0.15 -1.57 16 14 C -0.06 -0.85 0.54 -154.10 -0.08 -0.93 16 15 C 0.11 1.82 4.89 -2.86 -0.01 1.80 16 16 C -0.12 -1.84 4.83 -27.01 -0.13 -1.97 16 17 C 0.14 2.87 6.25 -3.64 -0.02 2.85 16 18 N -0.59 -14.46 2.99 -172.13 -0.51 -14.98 16 19 C -0.25 -6.79 9.59 -15.06 -0.14 -6.94 16 20 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 21 C 0.00 0.01 4.94 -17.43 -0.09 -0.08 16 22 N -0.90 -26.33 11.05 55.49 0.61 -25.71 16 23 Si 0.90 21.70 29.59 -169.99 -5.03 16.67 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 C 0.17 3.99 5.02 -3.62 -0.02 3.97 16 28 C -0.12 -2.29 4.83 -27.01 -0.13 -2.42 16 29 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 30 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.41 4.30 7.72 -40.82 -0.32 3.98 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.61 5.71 -51.93 -0.30 0.32 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 39 H 0.07 0.59 6.03 -51.93 -0.31 0.27 16 40 H 0.08 0.88 8.01 -51.93 -0.42 0.46 16 41 H 0.07 0.73 8.00 -51.93 -0.42 0.32 16 42 H 0.06 0.95 7.97 -51.93 -0.41 0.54 16 43 H 0.09 1.80 6.07 -51.93 -0.31 1.48 16 44 H 0.05 0.71 8.09 -51.93 -0.42 0.29 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 47 H 0.02 0.37 7.63 -51.93 -0.40 -0.03 16 48 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 49 H 0.09 2.47 5.89 -51.93 -0.31 2.16 16 50 H 0.02 0.47 6.58 -51.93 -0.34 0.13 16 51 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 52 H 0.05 0.83 7.84 -51.92 -0.41 0.43 16 LS Contribution 398.21 15.07 6.00 6.00 Total: -1.00 -32.88 398.21 -9.12 -42.01 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -8.92 Total: 3.29 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -0.61 Total: 7.17 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: -0.74 Total: -57.90 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: 0.18 Total: -17.24 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.88 -9.12 -42.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716726518.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.312 kcal (2) G-P(sol) polarization free energy of solvation -32.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds