Wall clock time and date at job start Tue Mar 31 2020 20:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 110.02245 * 2 1 4 4 C 1.54266 * 110.07489 * 238.57580 * 2 1 3 5 5 C 1.54887 * 104.20059 * 217.08563 * 4 2 1 6 6 C 1.54887 * 102.74588 * 37.94033 * 5 4 2 7 7 C 1.53876 * 110.03222 * 121.38692 * 2 1 3 8 8 H 1.09001 * 110.07724 * 238.63759 * 7 2 1 9 9 C 1.53003 * 110.03231 * 0.04890 * 7 2 1 10 10 C 1.50700 * 109.47035 * 183.61773 * 9 7 2 11 11 O 1.21277 * 120.00100 * 0.02562 * 10 9 7 12 12 N 1.34779 * 119.99392 * 179.97438 * 10 9 7 13 13 C 1.46494 * 120.00286 * 0.02562 * 12 10 9 14 14 C 1.46502 * 119.99352 * 180.02562 * 12 10 9 15 15 C 1.53940 * 113.73309 * 216.72678 * 14 12 10 16 16 N 1.47959 * 86.18155 * 221.92498 * 15 14 12 17 17 C 1.46901 * 111.00109 * 137.58439 * 16 15 14 18 18 C 1.50697 * 109.47027 * 90.63663 * 17 16 15 19 19 O 1.21293 * 120.00316 * 359.97438 * 18 17 16 20 20 N 1.34785 * 119.99617 * 180.02562 * 18 17 16 21 21 C 1.37098 * 119.99771 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00210 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00087 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99914 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00240 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46840 * 60.00340 * 25 23 21 27 27 H 1.48501 * 109.47026 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47423 * 300.00515 * 25 23 21 29 29 C 1.47957 * 90.76365 * 24.68606 * 16 15 14 30 30 H 1.08997 * 109.47428 * 298.61154 * 1 2 3 31 31 H 1.08997 * 109.47013 * 58.61330 * 1 2 3 32 32 H 1.09001 * 109.47551 * 178.61068 * 1 2 3 33 33 H 1.08997 * 110.48797 * 335.76661 * 4 2 1 34 34 H 1.08998 * 110.48595 * 98.27226 * 4 2 1 35 35 H 1.09003 * 110.75447 * 279.63123 * 5 4 2 36 36 H 1.08997 * 110.76217 * 156.25802 * 5 4 2 37 37 H 1.09001 * 110.48816 * 203.37854 * 6 5 4 38 38 H 1.09004 * 110.48531 * 80.74069 * 6 5 4 39 39 H 1.08997 * 109.46942 * 303.62481 * 9 7 2 40 40 H 1.09003 * 109.46844 * 63.62018 * 9 7 2 41 41 H 1.09004 * 109.46908 * 90.00231 * 13 12 10 42 42 H 1.09004 * 109.46936 * 209.99436 * 13 12 10 43 43 H 1.08996 * 109.47452 * 330.00160 * 13 12 10 44 44 H 1.08993 * 112.94129 * 348.43182 * 14 12 10 45 45 H 1.09007 * 113.75679 * 336.24191 * 15 14 12 46 46 H 1.08997 * 113.76214 * 107.60254 * 15 14 12 47 47 H 1.08997 * 109.46922 * 210.63933 * 17 16 15 48 48 H 1.09001 * 109.46695 * 330.63545 * 17 16 15 49 49 H 0.97001 * 120.00131 * 0.02562 * 20 18 17 50 50 H 0.96997 * 120.00135 * 180.02562 * 24 23 21 51 51 H 1.09001 * 113.76323 * 220.98957 * 29 16 15 52 52 H 1.09009 * 113.75642 * 89.63081 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0594 -0.7554 -1.2364 5 6 3.3149 -1.4998 -0.7180 6 6 2.8884 -1.9396 0.7045 7 6 2.0570 -0.7529 1.2341 8 1 2.6858 -0.0947 1.8337 9 6 0.8861 -1.2669 2.0742 10 6 1.4142 -1.9239 3.3233 11 8 2.6095 -1.9756 3.5223 12 7 0.5582 -2.4532 4.2198 13 6 -0.8855 -2.3902 3.9796 14 6 1.0717 -3.0914 5.4344 15 6 0.2668 -4.3287 5.8718 16 7 0.4068 -3.8097 7.2503 17 6 -0.8542 -3.9404 7.9926 18 6 -0.8827 -5.2684 8.7044 19 8 0.0549 -6.0311 8.6030 20 7 -1.9506 -5.6089 9.4529 21 6 -1.9768 -6.8172 10.1001 22 1 -1.1416 -7.4960 10.0105 23 6 -3.0774 -7.1680 10.8722 24 7 -4.0935 -6.3418 10.9817 25 14 -3.1135 -8.8147 11.7535 26 1 -1.9715 -8.8949 12.6994 27 1 -4.3884 -8.9469 12.5035 28 1 -3.0095 -9.9114 10.7578 29 6 0.5791 -2.4332 6.7358 30 1 -0.3634 0.4921 0.9021 31 1 -0.3633 0.5352 -0.8773 32 1 -0.3634 -1.0273 -0.0249 33 1 1.3159 -1.4665 -1.5964 34 1 2.3284 -0.0537 -2.0259 35 1 4.1718 -0.8275 -0.6738 36 1 3.5347 -2.3669 -1.3408 37 1 3.7645 -2.1020 1.3324 38 1 2.2787 -2.8420 0.6581 39 1 0.2411 -0.4319 2.3477 40 1 0.3148 -1.9928 1.4955 41 1 -1.2011 -3.2761 3.4284 42 1 -1.4111 -2.3497 4.9337 43 1 -1.1186 -1.4983 3.3981 44 1 2.1489 -3.2545 5.4057 45 1 -0.7605 -4.3356 5.5073 46 1 0.7856 -5.2723 5.7029 47 1 -0.9310 -3.1349 8.7228 48 1 -1.6922 -3.8823 7.2980 49 1 -2.7009 -4.9993 9.5331 50 1 -4.8617 -6.5866 11.5210 51 1 1.3473 -1.8623 7.2573 52 1 -0.3569 -1.8858 6.6241 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716741621.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:49 Heat of formation + Delta-G solvation = -66.607711 kcal Electronic energy + Delta-G solvation = -29454.740688 eV Core-core repulsion = 25453.920243 eV Total energy + Delta-G solvation = -4000.820445 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.86684 -40.71591 -39.68389 -38.88533 -36.11784 -35.81741 -33.30987 -32.86869 -31.84191 -31.12908 -28.02383 -27.65876 -27.13674 -26.70069 -25.76336 -24.75951 -21.84264 -21.43251 -20.96555 -20.10879 -19.84209 -19.25273 -18.35183 -17.83878 -17.64302 -17.00036 -16.82297 -16.54199 -16.19732 -15.83645 -15.72161 -15.61366 -14.98855 -14.94539 -14.52121 -14.38836 -14.16052 -14.00328 -13.69826 -13.63627 -13.49823 -13.34179 -13.22851 -13.08022 -13.01851 -12.83110 -12.70944 -12.44019 -12.14752 -12.12513 -11.89265 -11.80571 -11.62790 -11.55306 -11.50113 -11.48400 -11.38598 -11.11140 -10.71980 -10.39085 -10.01123 -9.72051 -9.64956 -8.46695 -5.95238 1.39165 1.41052 1.51745 1.64366 1.90831 2.05926 2.29055 2.78875 3.19374 3.32736 3.44974 3.55914 3.69927 3.71623 3.76427 3.92021 4.10217 4.18181 4.25619 4.28543 4.33251 4.38314 4.43862 4.45533 4.50432 4.54228 4.60840 4.67517 4.71523 4.75895 4.76251 4.78106 4.89333 4.93600 4.97380 4.99060 5.09863 5.12379 5.18891 5.31079 5.33417 5.40490 5.44037 5.45400 5.48210 5.53534 5.63683 5.85705 6.05864 6.42040 6.61209 7.13370 7.20852 7.56731 8.13871 8.70376 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.029867 B = 0.001800 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.253419 B =15555.268778 C =15782.342479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 H 0.073 0.927 4 C -0.117 4.117 5 C -0.128 4.128 6 C -0.114 4.114 7 C -0.072 4.072 8 H 0.057 0.943 9 C -0.125 4.125 10 C 0.505 3.495 11 O -0.581 6.581 12 N -0.606 5.606 13 C 0.063 3.937 14 C 0.127 3.873 15 C 0.004 3.996 16 N -0.483 5.483 17 C 0.028 3.972 18 C 0.440 3.560 19 O -0.621 6.621 20 N -0.574 5.574 21 C -0.335 4.335 22 H 0.075 0.925 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.991 3.009 26 H -0.274 1.274 27 H -0.268 1.268 28 H -0.272 1.272 29 C 0.001 3.999 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.043 0.957 38 H 0.056 0.944 39 H 0.122 0.878 40 H 0.114 0.886 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.105 0.895 44 H 0.100 0.900 45 H 0.093 0.907 46 H 0.068 0.932 47 H 0.109 0.891 48 H 0.089 0.911 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.093 0.907 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.135 17.454 -24.621 30.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 H 0.091 0.909 4 C -0.154 4.154 5 C -0.165 4.165 6 C -0.152 4.152 7 C -0.091 4.091 8 H 0.076 0.924 9 C -0.164 4.164 10 C 0.295 3.705 11 O -0.461 6.461 12 N -0.339 5.339 13 C -0.078 4.078 14 C 0.022 3.978 15 C -0.125 4.125 16 N -0.206 5.206 17 C -0.104 4.104 18 C 0.227 3.773 19 O -0.507 6.507 20 N -0.212 5.212 21 C -0.464 4.464 22 H 0.093 0.907 23 C -0.211 4.211 24 N -0.559 5.559 25 Si 0.815 3.185 26 H -0.200 1.200 27 H -0.193 1.193 28 H -0.198 1.198 29 C -0.128 4.128 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.140 0.860 40 H 0.132 0.868 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.123 0.877 44 H 0.118 0.882 45 H 0.111 0.889 46 H 0.086 0.914 47 H 0.127 0.873 48 H 0.106 0.894 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.111 0.889 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.644 16.627 -24.022 29.442 hybrid contribution -0.777 -0.590 0.631 1.162 sum 2.867 16.037 -23.391 28.505 Atomic orbital electron populations 1.22024 0.93684 1.02507 1.02409 1.21768 0.96862 0.98945 0.93239 0.90896 1.22448 0.96832 0.99021 0.97133 1.22516 0.98276 1.00062 0.95663 1.22337 0.99213 0.97534 0.96102 1.21538 0.95182 0.96627 0.95753 0.92406 1.22083 0.99870 1.02223 0.92198 1.21596 0.85970 0.77595 0.85328 1.90681 1.17621 1.59610 1.78139 1.48029 1.08367 1.57086 1.20400 1.22129 0.78023 1.04197 1.03456 1.22690 0.99349 0.92129 0.83615 1.24402 1.00823 0.98591 0.88708 1.68256 1.30689 1.09510 1.12163 1.22335 0.93212 0.95324 0.99495 1.20836 0.83100 0.90033 0.83289 1.90499 1.38045 1.55082 1.67086 1.41921 1.17838 1.17873 1.43549 1.19594 1.04130 0.95763 1.26942 0.90665 1.25995 0.94441 1.02773 0.97914 1.69653 1.07540 1.37826 1.40931 0.85019 0.77839 0.77493 0.78161 1.19962 1.19275 1.19764 1.24488 1.02583 0.91762 0.93945 0.91457 0.92268 0.91698 0.90958 0.91051 0.91932 0.91464 0.93814 0.92491 0.86000 0.86759 0.91312 0.90438 0.87652 0.88163 0.88868 0.91354 0.87256 0.89366 0.76906 0.91269 0.88873 0.88171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 7.89 71.98 0.57 -0.37 16 2 C -0.09 -0.91 3.50 -10.07 -0.04 -0.94 16 3 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 4 C -0.12 -1.20 6.36 31.67 0.20 -1.00 16 5 C -0.13 -1.77 6.91 31.88 0.22 -1.55 16 6 C -0.11 -2.06 5.36 31.67 0.17 -1.89 16 7 C -0.07 -1.07 2.56 -10.07 -0.03 -1.10 16 8 H 0.06 1.11 7.97 -2.39 -0.02 1.09 16 9 C -0.12 -1.52 2.43 29.85 0.07 -1.45 16 10 C 0.50 10.60 7.45 87.66 0.65 11.25 16 11 O -0.58 -17.57 14.24 -3.02 -0.04 -17.62 16 12 N -0.61 -11.42 3.09 -826.82 -2.56 -13.97 16 13 C 0.06 0.67 8.84 127.77 1.13 1.79 16 14 C 0.13 3.20 4.39 46.56 0.20 3.41 16 15 C 0.00 0.12 7.37 86.41 0.64 0.76 16 16 N -0.48 -15.86 5.65 -912.82 -5.16 -21.01 16 17 C 0.03 0.94 5.28 85.56 0.45 1.39 16 18 C 0.44 21.26 7.83 87.65 0.69 21.95 16 19 O -0.62 -35.85 16.01 -3.07 -0.05 -35.90 16 20 N -0.57 -29.50 5.29 -306.98 -1.62 -31.12 16 21 C -0.33 -19.19 9.68 84.04 0.81 -18.38 16 22 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 23 C -0.01 -0.61 5.50 84.92 0.47 -0.14 16 24 N -0.92 -49.17 13.05 21.66 0.28 -48.88 16 25 Si 0.99 43.14 29.55 68.60 2.03 45.17 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 27 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 28 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 29 C 0.00 0.04 7.47 86.41 0.65 0.68 16 30 H 0.07 0.31 6.65 -2.39 -0.02 0.29 16 31 H 0.06 0.33 8.14 -2.39 -0.02 0.32 16 32 H 0.06 0.35 6.82 -2.39 -0.02 0.34 16 33 H 0.07 0.67 7.84 -2.39 -0.02 0.65 16 34 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.04 1.04 7.60 -2.39 -0.02 1.02 16 38 H 0.06 1.03 7.78 -2.38 -0.02 1.02 16 39 H 0.12 0.87 5.77 -2.39 -0.01 0.85 16 40 H 0.11 1.00 6.82 -2.39 -0.02 0.99 16 41 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 42 H 0.08 0.78 6.36 -2.38 -0.02 0.77 16 43 H 0.11 0.47 6.44 -2.39 -0.02 0.46 16 44 H 0.10 3.11 7.24 -2.39 -0.02 3.09 16 45 H 0.09 2.23 6.05 -2.38 -0.01 2.22 16 46 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 47 H 0.11 3.22 8.08 -2.39 -0.02 3.20 16 48 H 0.09 2.40 7.38 -2.39 -0.02 2.38 16 49 H 0.40 19.06 7.90 -92.71 -0.73 18.32 16 50 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 51 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 52 H 0.10 1.78 6.75 -2.38 -0.02 1.76 16 Total: -1.00 -76.54 401.04 -0.07 -76.61 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: 0.19 Total: 32.32 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 6.86 Total: 14.42 kcal Atomic # 7 Polarization: -105.94 SS G_CDS: -9.05 Total: -114.99 kcal Atomic # 8 Polarization: -53.43 SS G_CDS: -0.09 Total: -53.52 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -76.54 -0.07 -76.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716741621.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.002 kcal (2) G-P(sol) polarization free energy of solvation -76.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds