Wall clock time and date at job start Tue Mar 31 2020 21:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.52563 * 2 1 4 4 C 1.53040 * 109.50022 * 239.91721 * 2 1 3 5 5 C 1.53041 * 109.54177 * 178.68342 * 4 2 1 6 6 C 1.53192 * 109.31291 * 61.36454 * 5 4 2 7 7 N 1.46928 * 108.77383 * 305.36980 * 6 5 4 8 8 C 1.34777 * 120.62532 * 233.88461 * 7 6 5 9 9 O 1.21355 * 119.99958 * 174.66623 * 8 7 6 10 10 C 1.49453 * 120.00431 * 354.66339 * 8 7 6 11 11 O 1.21347 * 119.99889 * 85.41035 * 10 8 7 12 12 N 1.34780 * 119.99827 * 265.42090 * 10 8 7 13 13 C 1.46925 * 120.62995 * 4.77652 * 12 10 8 14 14 C 1.53623 * 108.54110 * 126.37423 * 13 12 10 15 15 C 1.53044 * 109.24238 * 54.85401 * 14 13 12 16 16 C 1.53004 * 109.44701 * 178.49720 * 15 14 13 17 17 N 1.46494 * 109.45904 * 58.53371 * 15 14 13 18 18 C 1.36936 * 120.00433 * 59.92934 * 17 15 14 19 19 H 1.08002 * 119.99681 * 0.02562 * 18 17 15 20 20 C 1.38807 * 120.00493 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99836 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00456 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46655 * 60.00172 * 22 20 18 24 24 H 1.48496 * 109.47319 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47117 * 300.00447 * 22 20 18 26 26 C 1.53034 * 109.53606 * 298.51026 * 15 14 13 27 27 C 1.46928 * 120.62844 * 185.06263 * 12 10 8 28 28 C 1.46920 * 118.74061 * 53.60455 * 7 6 5 29 29 H 1.08991 * 109.47076 * 299.92168 * 1 2 3 30 30 H 1.08996 * 109.46746 * 59.92262 * 1 2 3 31 31 H 1.09005 * 109.46960 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.45914 * 298.70157 * 4 2 1 33 33 H 1.09004 * 109.46270 * 58.65895 * 4 2 1 34 34 H 1.09002 * 109.49626 * 181.31700 * 5 4 2 35 35 H 1.09001 * 109.49577 * 301.37989 * 5 4 2 36 36 H 1.08995 * 109.58508 * 185.58313 * 6 5 4 37 37 H 1.08997 * 109.58644 * 65.15216 * 6 5 4 38 38 H 1.09005 * 109.58590 * 246.20612 * 13 12 10 39 39 H 1.09002 * 109.58943 * 6.63039 * 13 12 10 40 40 H 1.09002 * 109.63069 * 294.86372 * 14 13 12 41 41 H 1.08998 * 109.45912 * 174.73914 * 14 13 12 42 42 H 1.08997 * 109.47034 * 180.02562 * 16 15 14 43 43 H 1.08997 * 109.47049 * 300.06226 * 16 15 14 44 44 H 1.08999 * 109.47011 * 60.06438 * 16 15 14 45 45 H 0.96999 * 120.00126 * 239.92889 * 17 15 14 46 46 H 0.97001 * 120.00177 * 179.97438 * 21 20 18 47 47 H 1.09002 * 109.50401 * 301.41191 * 26 15 14 48 48 H 1.09000 * 109.52255 * 181.33246 * 26 15 14 49 49 H 1.09003 * 109.58446 * 353.36597 * 27 12 10 50 50 H 1.09001 * 109.58412 * 113.79446 * 27 12 10 51 51 H 1.09003 * 109.58694 * 66.18767 * 28 7 6 52 52 H 1.09009 * 109.58651 * 186.45816 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0409 -0.7231 -1.2483 5 6 3.5709 -0.6951 -1.2660 6 6 4.1054 -1.4267 -0.0307 7 7 3.5046 -0.8291 1.1696 8 6 4.2814 -0.3809 2.1757 9 8 3.7805 0.1976 3.1176 10 6 5.7597 -0.5963 2.1315 11 8 6.4701 0.1908 1.5412 12 7 6.3037 -1.6648 2.7470 13 6 5.4496 -2.6816 3.3758 14 6 5.8364 -4.0588 2.8157 15 6 7.3363 -4.2837 3.0212 16 6 7.7198 -5.6697 2.4988 17 7 7.6518 -4.1958 4.4490 18 6 7.0623 -5.0577 5.3349 19 1 6.3650 -5.8025 4.9809 20 6 7.3617 -4.9748 6.6878 21 7 8.2119 -4.0674 7.1192 22 14 6.5581 -6.1510 7.8961 23 1 6.9103 -7.5479 7.5357 24 1 7.0421 -5.8575 9.2690 25 1 5.0835 -5.9831 7.8441 26 6 8.1231 -3.2156 2.2584 27 6 7.7622 -1.8317 2.8073 28 6 2.0414 -0.7238 1.2495 29 1 -0.3633 0.5126 0.8906 30 1 -0.3633 0.5150 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6968 -1.7574 -1.2352 33 1 1.6582 -0.2246 -2.1389 34 1 3.9335 -1.1898 -2.1671 35 1 3.9160 0.3388 -1.2547 36 1 5.1896 -1.3245 0.0138 37 1 3.8376 -2.4818 -0.0866 38 1 5.5996 -2.6678 4.4554 39 1 4.4044 -2.4730 3.1474 40 1 5.6049 -4.0994 1.7514 41 1 5.2772 -4.8339 3.3396 42 1 8.7878 -5.8305 2.6453 43 1 7.1594 -6.4306 3.0419 44 1 7.4855 -5.7351 1.4363 45 1 8.2784 -3.5271 4.7670 46 1 8.4209 -4.0091 8.0647 47 1 7.8701 -3.2642 1.1992 48 1 9.1915 -3.3900 2.3855 49 1 8.2433 -1.0622 2.2035 50 1 8.0968 -1.7501 3.8415 51 1 1.6053 -1.7216 1.2981 52 1 1.7637 -0.1601 2.1403 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717302310.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:34 Heat of formation + Delta-G solvation = -62.870823 kcal Electronic energy + Delta-G solvation = -31711.513536 eV Core-core repulsion = 27710.855134 eV Total energy + Delta-G solvation = -4000.658402 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.01581 -39.40395 -38.04781 -37.45090 -34.62346 -34.09901 -32.40262 -32.14884 -30.89559 -29.13741 -28.15091 -27.31703 -26.24969 -24.28639 -23.62083 -23.03325 -22.61538 -21.81602 -20.37112 -19.20666 -18.39536 -17.42193 -17.13909 -16.91856 -16.34953 -15.51463 -15.00570 -14.93673 -14.80642 -14.59184 -14.50768 -14.01412 -13.82292 -13.73912 -13.62283 -13.54436 -13.17736 -13.08074 -12.90401 -12.50330 -12.35279 -12.17275 -12.13083 -11.59980 -11.47453 -11.39348 -11.37072 -11.23794 -11.15335 -11.00147 -10.91167 -10.82128 -10.78403 -10.70819 -10.34281 -10.31425 -9.72795 -9.58709 -9.39076 -8.98539 -8.91201 -8.41543 -7.01135 -5.80404 -3.09579 2.16803 2.22775 2.66903 3.38824 3.40720 3.45647 3.47275 4.18305 4.38375 4.48446 4.52324 4.54866 4.67525 4.93555 5.07848 5.13377 5.16452 5.24435 5.26839 5.30760 5.36088 5.41668 5.48253 5.49097 5.51809 5.52413 5.64847 5.65490 5.71205 5.77700 5.80090 5.85091 5.95577 5.99590 6.05477 6.06354 6.16449 6.21796 6.32978 6.34424 6.43659 6.49128 6.60764 6.80054 6.91458 6.99285 7.00725 7.44334 7.66605 7.77966 7.99712 8.37541 9.49265 10.04996 10.40032 11.41912 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014863 B = 0.003320 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.362695 B = 8432.293861 C = 8924.673590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 H 0.075 0.925 4 C -0.115 4.115 5 C -0.134 4.134 6 C 0.105 3.895 7 N -0.599 5.599 8 C 0.522 3.478 9 O -0.513 6.513 10 C 0.513 3.487 11 O -0.531 6.531 12 N -0.577 5.577 13 C 0.115 3.885 14 C -0.131 4.131 15 C 0.197 3.803 16 C -0.149 4.149 17 N -0.717 5.717 18 C -0.236 4.236 19 H 0.070 0.930 20 C -0.010 4.010 21 N -0.931 5.931 22 Si 0.902 3.098 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.286 1.286 26 C -0.128 4.128 27 C 0.113 3.887 28 C 0.114 3.886 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.049 0.951 41 H 0.078 0.922 42 H 0.050 0.950 43 H 0.056 0.944 44 H 0.035 0.965 45 H 0.384 0.616 46 H 0.256 0.744 47 H 0.064 0.936 48 H 0.077 0.923 49 H 0.087 0.913 50 H 0.083 0.917 51 H 0.073 0.927 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.166 3.953 -18.627 22.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 H 0.094 0.906 4 C -0.152 4.152 5 C -0.173 4.173 6 C -0.017 4.017 7 N -0.335 5.335 8 C 0.305 3.695 9 O -0.386 6.386 10 C 0.295 3.705 11 O -0.408 6.408 12 N -0.310 5.310 13 C -0.007 4.007 14 C -0.172 4.172 15 C 0.105 3.895 16 C -0.209 4.209 17 N -0.359 5.359 18 C -0.367 4.367 19 H 0.088 0.912 20 C -0.206 4.206 21 N -0.579 5.579 22 Si 0.733 3.267 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.213 1.213 26 C -0.166 4.166 27 C -0.008 4.008 28 C -0.008 4.008 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.054 0.946 45 H 0.219 0.781 46 H 0.066 0.934 47 H 0.082 0.918 48 H 0.096 0.904 49 H 0.105 0.895 50 H 0.102 0.898 51 H 0.092 0.908 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.115 4.554 -18.280 21.873 hybrid contribution -0.254 -0.548 0.932 1.111 sum -11.369 4.006 -17.347 21.124 Atomic orbital electron populations 1.21758 0.94175 1.02157 1.02151 1.21518 0.96082 1.00305 0.94815 0.90630 1.21603 0.95090 1.00936 0.97579 1.21908 0.96120 1.01758 0.97470 1.21823 0.98756 0.97310 0.83853 1.48101 1.06873 1.60119 1.18389 1.20408 0.87628 0.78862 0.82611 1.90795 1.73611 1.40472 1.33766 1.20066 0.88376 0.82232 0.79836 1.90763 1.61428 1.44906 1.43718 1.48163 1.08360 1.21320 1.53171 1.21912 0.91719 0.87050 1.00030 1.22382 0.99990 0.95914 0.98901 1.19537 0.91291 0.92419 0.86208 1.22210 1.01514 0.98944 0.98204 1.42505 1.53032 1.40705 0.99669 1.19045 1.19714 1.10249 0.87711 0.91214 1.24701 0.99820 0.99070 0.97027 1.69633 1.37596 1.36243 1.14417 0.86352 0.78862 0.80608 0.80844 1.21388 1.21798 1.21311 1.22086 1.01043 0.94153 0.99330 1.21733 0.78342 0.97829 1.02939 1.21770 0.78408 1.01267 0.99375 0.92282 0.92277 0.92350 0.91516 0.91494 0.90310 0.91164 0.89570 0.90564 0.88485 0.91894 0.93222 0.90387 0.93046 0.92509 0.94578 0.78096 0.93438 0.91767 0.90394 0.89504 0.89835 0.90828 0.88700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.20 37.16 0.34 -0.58 16 2 C -0.11 -0.87 2.87 -90.50 -0.26 -1.13 16 3 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.11 -0.79 5.17 -26.69 -0.14 -0.92 16 5 C -0.13 -1.06 6.08 -26.61 -0.16 -1.23 16 6 C 0.11 1.04 6.33 -3.71 -0.02 1.02 16 7 N -0.60 -7.35 2.97 -173.28 -0.51 -7.87 16 8 C 0.52 8.51 5.49 -11.58 -0.06 8.44 16 9 O -0.51 -9.86 16.51 5.49 0.09 -9.77 16 10 C 0.51 8.85 5.61 -11.58 -0.06 8.79 16 11 O -0.53 -10.15 16.31 5.50 0.09 -10.06 16 12 N -0.58 -9.62 2.97 -173.00 -0.51 -10.13 16 13 C 0.11 1.93 6.09 -3.49 -0.02 1.91 16 14 C -0.13 -2.09 4.72 -26.38 -0.12 -2.22 16 15 C 0.20 3.41 0.74 -131.78 -0.10 3.31 16 16 C -0.15 -2.46 8.44 37.16 0.31 -2.14 16 17 N -0.72 -15.87 4.13 -47.20 -0.19 -16.07 16 18 C -0.24 -5.91 8.68 -15.06 -0.13 -6.04 16 19 H 0.07 1.70 6.70 -52.49 -0.35 1.35 16 20 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 21 N -0.93 -26.84 13.06 55.49 0.72 -26.12 16 22 Si 0.90 21.57 29.55 -169.99 -5.02 16.54 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 C -0.13 -1.93 4.96 -26.61 -0.13 -2.06 16 27 C 0.11 1.85 6.17 -3.71 -0.02 1.83 16 28 C 0.11 1.15 5.73 -3.72 -0.02 1.13 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.99 6.23 -51.93 -0.32 0.66 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.10 1.98 7.74 -51.93 -0.40 1.58 16 39 H 0.06 0.98 6.37 -51.93 -0.33 0.65 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 1.32 7.31 -51.93 -0.38 0.95 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.06 1.01 7.27 -51.93 -0.38 0.63 16 44 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.38 9.28 6.46 -40.82 -0.26 9.02 16 46 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 47 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.09 1.37 7.00 -51.93 -0.36 1.01 16 50 H 0.08 1.53 6.94 -51.93 -0.36 1.17 16 51 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 52 H 0.09 1.11 6.99 -51.92 -0.36 0.75 16 LS Contribution 398.03 15.07 6.00 6.00 Total: -1.00 -30.77 398.03 -9.04 -39.81 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -8.99 Total: 7.92 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: -0.70 Total: 9.75 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.50 Total: -60.19 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: 0.18 Total: -19.83 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.77 -9.04 -39.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717302310.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.061 kcal (2) G-P(sol) polarization free energy of solvation -30.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds