Wall clock time and date at job start Tue Mar 31 2020 21:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.52563 * 2 1 4 4 C 1.53040 * 109.50022 * 239.91721 * 2 1 3 5 5 C 1.53041 * 109.54177 * 178.68342 * 4 2 1 6 6 C 1.53192 * 109.31291 * 61.36454 * 5 4 2 7 7 N 1.46928 * 108.77383 * 305.36980 * 6 5 4 8 8 C 1.34777 * 120.62532 * 233.88461 * 7 6 5 9 9 O 1.21355 * 119.99958 * 174.66623 * 8 7 6 10 10 C 1.49453 * 120.00431 * 354.66339 * 8 7 6 11 11 O 1.21347 * 119.99889 * 85.41035 * 10 8 7 12 12 N 1.34780 * 119.99827 * 265.42090 * 10 8 7 13 13 C 1.46925 * 120.62995 * 4.77652 * 12 10 8 14 14 C 1.53623 * 108.54110 * 126.37423 * 13 12 10 15 15 C 1.53044 * 109.24238 * 54.85401 * 14 13 12 16 16 C 1.53004 * 109.44701 * 178.49720 * 15 14 13 17 17 N 1.46494 * 109.45904 * 58.53371 * 15 14 13 18 18 C 1.36936 * 120.00433 * 59.92934 * 17 15 14 19 19 H 1.08002 * 119.99681 * 0.02562 * 18 17 15 20 20 C 1.38807 * 120.00493 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99836 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00456 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46655 * 60.00172 * 22 20 18 24 24 H 1.48496 * 109.47319 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47117 * 300.00447 * 22 20 18 26 26 C 1.53034 * 109.53606 * 298.51026 * 15 14 13 27 27 C 1.46928 * 120.62844 * 185.06263 * 12 10 8 28 28 C 1.46920 * 118.74061 * 53.60455 * 7 6 5 29 29 H 1.08991 * 109.47076 * 299.92168 * 1 2 3 30 30 H 1.08996 * 109.46746 * 59.92262 * 1 2 3 31 31 H 1.09005 * 109.46960 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.45914 * 298.70157 * 4 2 1 33 33 H 1.09004 * 109.46270 * 58.65895 * 4 2 1 34 34 H 1.09002 * 109.49626 * 181.31700 * 5 4 2 35 35 H 1.09001 * 109.49577 * 301.37989 * 5 4 2 36 36 H 1.08995 * 109.58508 * 185.58313 * 6 5 4 37 37 H 1.08997 * 109.58644 * 65.15216 * 6 5 4 38 38 H 1.09005 * 109.58590 * 246.20612 * 13 12 10 39 39 H 1.09002 * 109.58943 * 6.63039 * 13 12 10 40 40 H 1.09002 * 109.63069 * 294.86372 * 14 13 12 41 41 H 1.08998 * 109.45912 * 174.73914 * 14 13 12 42 42 H 1.08997 * 109.47034 * 180.02562 * 16 15 14 43 43 H 1.08997 * 109.47049 * 300.06226 * 16 15 14 44 44 H 1.08999 * 109.47011 * 60.06438 * 16 15 14 45 45 H 0.96999 * 120.00126 * 239.92889 * 17 15 14 46 46 H 0.97001 * 120.00177 * 179.97438 * 21 20 18 47 47 H 1.09002 * 109.50401 * 301.41191 * 26 15 14 48 48 H 1.09000 * 109.52255 * 181.33246 * 26 15 14 49 49 H 1.09003 * 109.58446 * 353.36597 * 27 12 10 50 50 H 1.09001 * 109.58412 * 113.79446 * 27 12 10 51 51 H 1.09003 * 109.58694 * 66.18767 * 28 7 6 52 52 H 1.09009 * 109.58651 * 186.45816 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0409 -0.7231 -1.2483 5 6 3.5709 -0.6951 -1.2660 6 6 4.1054 -1.4267 -0.0307 7 7 3.5046 -0.8291 1.1696 8 6 4.2814 -0.3809 2.1757 9 8 3.7805 0.1976 3.1176 10 6 5.7597 -0.5963 2.1315 11 8 6.4701 0.1908 1.5412 12 7 6.3037 -1.6648 2.7470 13 6 5.4496 -2.6816 3.3758 14 6 5.8364 -4.0588 2.8157 15 6 7.3363 -4.2837 3.0212 16 6 7.7198 -5.6697 2.4988 17 7 7.6518 -4.1958 4.4490 18 6 7.0623 -5.0577 5.3349 19 1 6.3650 -5.8025 4.9809 20 6 7.3617 -4.9748 6.6878 21 7 8.2119 -4.0674 7.1192 22 14 6.5581 -6.1510 7.8961 23 1 6.9103 -7.5479 7.5357 24 1 7.0421 -5.8575 9.2690 25 1 5.0835 -5.9831 7.8441 26 6 8.1231 -3.2156 2.2584 27 6 7.7622 -1.8317 2.8073 28 6 2.0414 -0.7238 1.2495 29 1 -0.3633 0.5126 0.8906 30 1 -0.3633 0.5150 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6968 -1.7574 -1.2352 33 1 1.6582 -0.2246 -2.1389 34 1 3.9335 -1.1898 -2.1671 35 1 3.9160 0.3388 -1.2547 36 1 5.1896 -1.3245 0.0138 37 1 3.8376 -2.4818 -0.0866 38 1 5.5996 -2.6678 4.4554 39 1 4.4044 -2.4730 3.1474 40 1 5.6049 -4.0994 1.7514 41 1 5.2772 -4.8339 3.3396 42 1 8.7878 -5.8305 2.6453 43 1 7.1594 -6.4306 3.0419 44 1 7.4855 -5.7351 1.4363 45 1 8.2784 -3.5271 4.7670 46 1 8.4209 -4.0091 8.0647 47 1 7.8701 -3.2642 1.1992 48 1 9.1915 -3.3900 2.3855 49 1 8.2433 -1.0622 2.2035 50 1 8.0968 -1.7501 3.8415 51 1 1.6053 -1.7216 1.2981 52 1 1.7637 -0.1601 2.1403 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717302310.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:33 Heat of formation + Delta-G solvation = -81.810234 kcal Electronic energy + Delta-G solvation = -31712.334810 eV Core-core repulsion = 27710.855134 eV Total energy + Delta-G solvation = -4001.479676 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.25792 -40.59647 -39.29240 -38.67210 -36.17801 -34.95306 -34.20033 -32.87771 -32.24860 -30.90092 -29.48178 -28.18233 -27.12398 -25.91150 -25.03635 -24.39136 -23.35158 -23.03380 -21.23429 -20.41886 -19.62372 -19.02716 -18.73471 -18.18104 -17.63580 -16.59168 -16.34594 -16.15393 -15.97392 -15.70706 -15.51272 -15.42518 -15.26606 -15.00575 -14.89734 -14.56731 -14.40222 -14.13551 -14.09237 -13.56884 -13.55034 -13.21780 -13.02479 -12.90512 -12.79669 -12.68443 -12.64419 -12.58870 -12.53759 -12.21892 -12.11163 -12.04619 -11.87162 -11.80504 -11.64593 -11.47321 -11.33030 -11.10776 -10.85908 -10.71489 -9.88580 -9.85713 -8.89433 -7.85335 -5.10854 0.88939 0.97407 1.37580 1.50093 1.50841 1.56334 2.20329 2.61647 3.00071 3.48984 3.69352 3.79210 3.82642 3.85670 3.87724 3.93038 4.00196 4.13708 4.20174 4.25538 4.35378 4.38201 4.49698 4.59388 4.61660 4.64441 4.71553 4.75043 4.77558 4.83944 4.85759 4.91346 5.01195 5.03641 5.07418 5.10148 5.14904 5.16418 5.22775 5.24857 5.28489 5.33747 5.38238 5.50161 5.54461 5.65357 5.67509 5.93527 6.06961 6.36839 6.58927 6.62652 7.44152 8.21407 8.42862 9.38324 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014863 B = 0.003320 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.362695 B = 8432.293861 C = 8924.673590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 H 0.055 0.945 4 C -0.110 4.110 5 C -0.130 4.130 6 C 0.097 3.903 7 N -0.586 5.586 8 C 0.516 3.484 9 O -0.555 6.555 10 C 0.514 3.486 11 O -0.553 6.553 12 N -0.574 5.574 13 C 0.124 3.876 14 C -0.122 4.122 15 C 0.186 3.814 16 C -0.142 4.142 17 N -0.726 5.726 18 C -0.210 4.210 19 H 0.080 0.920 20 C -0.077 4.077 21 N -0.972 5.972 22 Si 0.956 3.044 23 H -0.280 1.280 24 H -0.306 1.306 25 H -0.281 1.281 26 C -0.116 4.116 27 C 0.115 3.885 28 C 0.108 3.892 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.104 0.896 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.073 0.927 45 H 0.371 0.629 46 H 0.245 0.755 47 H 0.095 0.905 48 H 0.081 0.919 49 H 0.093 0.907 50 H 0.055 0.945 51 H 0.098 0.902 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.963 2.220 -22.240 25.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 H 0.074 0.926 4 C -0.147 4.147 5 C -0.168 4.168 6 C -0.024 4.024 7 N -0.319 5.319 8 C 0.299 3.701 9 O -0.433 6.433 10 C 0.297 3.703 11 O -0.432 6.432 12 N -0.306 5.306 13 C 0.001 3.999 14 C -0.162 4.162 15 C 0.097 3.903 16 C -0.201 4.201 17 N -0.367 5.367 18 C -0.342 4.342 19 H 0.097 0.903 20 C -0.269 4.269 21 N -0.624 5.624 22 Si 0.787 3.213 23 H -0.206 1.206 24 H -0.233 1.233 25 H -0.207 1.207 26 C -0.155 4.155 27 C -0.007 4.007 28 C -0.013 4.013 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.121 0.879 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.122 0.878 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.088 0.912 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.092 0.908 45 H 0.204 0.796 46 H 0.054 0.946 47 H 0.113 0.887 48 H 0.100 0.900 49 H 0.111 0.889 50 H 0.074 0.926 51 H 0.116 0.884 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.954 2.768 -21.989 25.671 hybrid contribution 0.272 0.022 1.912 1.931 sum -12.683 2.790 -20.077 23.911 Atomic orbital electron populations 1.21731 0.92627 1.03052 1.02393 1.21486 0.97276 0.99089 0.94458 0.92607 1.21605 0.94073 1.01867 0.97150 1.21907 0.96972 1.00642 0.97310 1.22125 0.97977 0.98954 0.83361 1.48257 1.07640 1.58156 1.17845 1.20294 0.87331 0.79207 0.83258 1.90776 1.74007 1.42836 1.35704 1.20297 0.88933 0.81727 0.79362 1.90741 1.62153 1.45462 1.44801 1.48169 1.08434 1.21266 1.52742 1.21739 0.92550 0.87965 0.97613 1.22304 0.98370 0.94509 1.01037 1.19900 0.92651 0.94062 0.83714 1.22109 1.00608 0.97114 1.00298 1.42719 1.52447 1.39753 1.01756 1.19394 1.17749 1.09168 0.87918 0.90259 1.25355 1.01531 1.01106 0.98932 1.69791 1.40205 1.38661 1.13712 0.85456 0.78170 0.79257 0.78391 1.20620 1.23346 1.20745 1.22025 1.00949 0.92038 1.00449 1.21688 0.78295 0.99187 1.01543 1.22016 0.76979 1.02600 0.99740 0.92984 0.91182 0.91079 0.89795 0.90056 0.87857 0.93049 0.91050 0.87769 0.92731 0.90562 0.89398 0.91217 0.94029 0.94025 0.90804 0.79647 0.94642 0.88673 0.90029 0.88903 0.92617 0.88426 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.20 71.98 0.66 -0.77 16 2 C -0.10 -1.45 2.87 -10.72 -0.03 -1.48 16 3 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 4 C -0.11 -1.09 5.17 30.62 0.16 -0.93 16 5 C -0.13 -1.65 6.08 30.67 0.19 -1.46 16 6 C 0.10 1.63 6.33 86.36 0.55 2.17 16 7 N -0.59 -13.51 2.97 -820.48 -2.44 -15.95 16 8 C 0.52 16.86 5.49 87.27 0.48 17.33 16 9 O -0.56 -22.10 16.51 -3.26 -0.05 -22.15 16 10 C 0.51 17.69 5.61 87.27 0.49 18.18 16 11 O -0.55 -21.16 16.31 -3.24 -0.05 -21.21 16 12 N -0.57 -18.92 2.97 -819.62 -2.43 -21.35 16 13 C 0.12 4.09 6.09 86.51 0.53 4.62 16 14 C -0.12 -3.57 4.72 30.82 0.15 -3.42 16 15 C 0.19 6.08 0.74 3.63 0.00 6.09 16 16 C -0.14 -4.24 8.44 71.98 0.61 -3.63 16 17 N -0.73 -32.25 4.13 -303.24 -1.25 -33.50 16 18 C -0.21 -10.52 8.68 84.03 0.73 -9.79 16 19 H 0.08 3.77 6.70 -2.91 -0.02 3.75 16 20 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 21 N -0.97 -58.14 13.06 21.65 0.28 -57.86 16 22 Si 0.96 45.09 29.55 68.60 2.03 47.12 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.31 -15.06 7.11 99.48 0.71 -14.35 16 25 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 26 C -0.12 -3.26 4.96 30.67 0.15 -3.11 16 27 C 0.11 3.72 6.17 86.36 0.53 4.25 16 28 C 0.11 2.01 5.73 86.36 0.49 2.50 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 1.45 6.23 -2.39 -0.01 1.44 16 37 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.05 2.29 7.74 -2.38 -0.02 2.27 16 39 H 0.08 2.31 6.37 -2.39 -0.02 2.29 16 40 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.07 2.19 7.31 -2.39 -0.02 2.17 16 42 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.04 1.36 7.27 -2.39 -0.02 1.34 16 44 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.37 18.45 6.46 -92.71 -0.60 17.85 16 46 H 0.24 14.59 8.31 -92.71 -0.77 13.81 16 47 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 49 H 0.09 2.90 7.00 -2.39 -0.02 2.89 16 50 H 0.06 2.13 6.94 -2.39 -0.02 2.11 16 51 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 52 H 0.07 1.71 6.99 -2.38 -0.02 1.69 16 Total: -1.00 -70.11 398.03 2.54 -67.57 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: 0.31 Total: 30.57 kcal Atomic # 6 Polarization: 20.62 SS G_CDS: 6.15 Total: 26.76 kcal Atomic # 7 Polarization: -122.82 SS G_CDS: -5.84 Total: -128.66 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -0.11 Total: -43.37 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -70.11 2.54 -67.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717302310.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.238 kcal (2) G-P(sol) polarization free energy of solvation -70.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds