Wall clock time and date at job start Tue Mar 31 2020 21:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.51952 * 2 1 4 4 C 1.53035 * 109.49588 * 120.08064 * 2 1 3 5 5 C 1.53045 * 109.53765 * 181.31672 * 4 2 1 6 6 C 1.53192 * 109.31423 * 298.63837 * 5 4 2 7 7 N 1.46928 * 108.77543 * 54.63228 * 6 5 4 8 8 C 1.34770 * 120.63004 * 126.37352 * 7 6 5 9 9 O 1.21353 * 119.99812 * 174.95667 * 8 7 6 10 10 C 1.49449 * 120.00333 * 354.95490 * 8 7 6 11 11 O 1.21345 * 119.99926 * 85.36270 * 10 8 7 12 12 N 1.34781 * 120.00111 * 265.37161 * 10 8 7 13 13 C 1.46922 * 120.62971 * 4.76272 * 12 10 8 14 14 C 1.52759 * 109.01161 * 233.58993 * 13 12 10 15 15 C 1.53044 * 109.38118 * 305.58619 * 14 13 12 16 16 C 1.52995 * 109.45930 * 181.26086 * 15 14 13 17 17 N 1.46497 * 109.46100 * 301.22151 * 15 14 13 18 18 C 1.36935 * 119.99947 * 300.06534 * 17 15 14 19 19 H 1.08000 * 119.99996 * 0.02562 * 18 17 15 20 20 C 1.38813 * 119.99859 * 180.02562 * 18 17 15 21 21 N 1.31616 * 120.00064 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99985 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47111 * 89.99995 * 22 20 18 24 24 H 1.48494 * 109.47252 * 209.99770 * 22 20 18 25 25 H 1.48499 * 109.47262 * 330.00378 * 22 20 18 26 26 C 1.53038 * 109.53452 * 61.24147 * 15 14 13 27 27 C 1.46924 * 120.62955 * 185.05008 * 12 10 8 28 28 C 1.46928 * 118.74006 * 306.38998 * 7 6 5 29 29 H 1.09003 * 109.46798 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47638 * 300.07834 * 1 2 3 31 31 H 1.09001 * 109.46884 * 60.08187 * 1 2 3 32 32 H 1.08995 * 109.46116 * 61.30159 * 4 2 1 33 33 H 1.08997 * 109.46525 * 301.33617 * 4 2 1 34 34 H 1.08995 * 109.49902 * 178.68039 * 5 4 2 35 35 H 1.09002 * 109.49427 * 58.58397 * 5 4 2 36 36 H 1.09002 * 109.58703 * 174.41925 * 6 5 4 37 37 H 1.09000 * 109.58197 * 294.84820 * 6 5 4 38 38 H 1.09005 * 109.58712 * 353.42242 * 13 12 10 39 39 H 1.09001 * 109.58527 * 113.84771 * 13 12 10 40 40 H 1.08998 * 109.56295 * 185.55206 * 14 13 12 41 41 H 1.08997 * 109.38806 * 65.51167 * 14 13 12 42 42 H 1.09003 * 109.46895 * 299.93107 * 16 15 14 43 43 H 1.08991 * 109.47230 * 59.93338 * 16 15 14 44 44 H 1.09005 * 109.46771 * 179.97438 * 16 15 14 45 45 H 0.97009 * 119.99870 * 120.06586 * 17 15 14 46 46 H 0.97005 * 120.00344 * 180.02562 * 21 20 18 47 47 H 1.09003 * 109.50195 * 178.68337 * 26 15 14 48 48 H 1.09000 * 109.52965 * 58.59918 * 26 15 14 49 49 H 1.09006 * 109.58229 * 246.15248 * 27 12 10 50 50 H 1.08995 * 109.59259 * 6.43422 * 27 12 10 51 51 H 1.08996 * 109.58825 * 173.39351 * 28 7 6 52 52 H 1.09001 * 109.58499 * 293.68511 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0407 -0.7231 1.2483 5 6 3.5708 -0.6950 1.2660 6 6 4.1053 -1.4266 0.0308 7 7 3.5046 -0.8290 -1.1696 8 6 4.2812 -0.3855 -2.1779 9 8 3.7724 0.0216 -3.2016 10 6 5.7688 -0.3950 -2.0353 11 8 6.3972 -1.3988 -2.2999 12 7 6.4124 0.7111 -1.6125 13 6 5.6593 1.8995 -1.1890 14 6 6.1633 3.1122 -1.9693 15 6 7.6790 3.2335 -1.7961 16 6 8.1813 4.4657 -2.5512 17 7 7.9983 3.3699 -0.3728 18 6 7.4968 4.4237 0.3434 19 1 6.8656 5.1541 -0.1408 20 6 7.7998 4.5532 1.6919 21 7 8.5687 3.6628 2.2821 22 14 7.1163 5.9912 2.6688 23 1 5.8051 5.6131 3.2545 24 1 8.0619 6.3435 3.7583 25 1 6.9384 7.1601 1.7704 26 6 8.3596 1.9813 -2.3536 27 6 7.8805 0.7537 -1.5724 28 6 2.0413 -0.7238 -1.2497 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5150 0.8892 31 1 -0.3633 0.5126 -0.8907 32 1 1.6967 -1.7572 1.2352 33 1 1.6582 -0.2245 2.1389 34 1 3.9334 -1.1896 2.1671 35 1 3.9159 0.3389 1.2540 36 1 5.1896 -1.3245 -0.0137 37 1 3.8375 -2.4817 0.0867 38 1 4.5986 1.7513 -1.3917 39 1 5.8098 2.0664 -0.1224 40 1 5.6808 4.0143 -1.5933 41 1 5.9267 2.9864 -3.0258 42 1 7.9445 4.3643 -3.6104 43 1 7.6967 5.3576 -2.1543 44 1 9.2608 4.5525 -2.4276 45 1 8.5650 2.7136 0.0622 46 1 8.7801 3.7530 3.2245 47 1 9.4405 2.0785 -2.2513 48 1 8.1029 1.8653 -3.4066 49 1 8.2158 0.8253 -0.5376 50 1 8.2849 -0.1512 -2.0257 51 1 1.7638 -0.1578 -2.1389 52 1 1.6055 -1.7215 -1.3006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717302311.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:39 Heat of formation + Delta-G solvation = -63.736215 kcal Electronic energy + Delta-G solvation = -32040.373645 eV Core-core repulsion = 28039.677717 eV Total energy + Delta-G solvation = -4000.695928 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.00608 -39.37095 -38.02417 -37.44237 -34.62530 -34.03589 -32.40933 -32.05064 -30.91500 -29.14860 -28.14237 -27.25106 -26.19522 -24.28519 -23.63161 -23.01451 -22.49844 -21.79270 -20.22749 -19.29593 -18.18555 -17.59659 -17.14008 -16.83191 -16.38324 -15.34535 -15.08741 -14.91040 -14.74648 -14.56736 -14.38025 -13.99649 -13.82691 -13.76128 -13.58099 -13.46566 -13.15469 -13.03699 -12.82109 -12.51434 -12.29684 -12.16753 -12.04374 -11.57612 -11.46946 -11.34218 -11.28275 -11.19864 -11.07162 -10.95897 -10.89211 -10.83197 -10.73158 -10.60880 -10.33767 -10.29477 -9.72278 -9.58374 -9.37954 -8.99861 -8.88806 -8.41936 -7.02319 -5.83027 -3.11432 2.14206 2.26334 2.69755 3.36964 3.39510 3.44056 3.45032 4.20871 4.47437 4.52672 4.57763 4.61591 4.78241 5.01841 5.13157 5.16914 5.25698 5.27499 5.33168 5.33703 5.45395 5.50273 5.51439 5.52301 5.56348 5.59902 5.67770 5.74414 5.77894 5.88414 5.92745 5.95745 5.98703 6.00874 6.07082 6.18246 6.18830 6.26370 6.35477 6.37185 6.45997 6.53370 6.62078 6.83616 6.93288 7.02171 7.02953 7.44490 7.66198 7.78153 8.00046 8.35145 9.47145 10.03162 10.39138 11.39338 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010223 B = 0.004427 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.276761 B = 6322.790602 C = 7807.374306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 H 0.079 0.921 4 C -0.114 4.114 5 C -0.138 4.138 6 C 0.107 3.893 7 N -0.598 5.598 8 C 0.523 3.477 9 O -0.517 6.517 10 C 0.512 3.488 11 O -0.531 6.531 12 N -0.577 5.577 13 C 0.117 3.883 14 C -0.135 4.135 15 C 0.198 3.802 16 C -0.150 4.150 17 N -0.716 5.716 18 C -0.232 4.232 19 H 0.070 0.930 20 C -0.010 4.010 21 N -0.932 5.932 22 Si 0.900 3.100 23 H -0.291 1.291 24 H -0.293 1.293 25 H -0.283 1.283 26 C -0.130 4.130 27 C 0.115 3.885 28 C 0.116 3.884 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.052 0.948 42 H 0.036 0.964 43 H 0.056 0.944 44 H 0.050 0.950 45 H 0.384 0.616 46 H 0.254 0.746 47 H 0.078 0.922 48 H 0.064 0.936 49 H 0.084 0.916 50 H 0.086 0.914 51 H 0.093 0.907 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.781 -8.976 -3.880 15.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 H 0.097 0.903 4 C -0.151 4.151 5 C -0.176 4.176 6 C -0.016 4.016 7 N -0.333 5.333 8 C 0.306 3.694 9 O -0.392 6.392 10 C 0.294 3.706 11 O -0.408 6.408 12 N -0.310 5.310 13 C -0.005 4.005 14 C -0.176 4.176 15 C 0.106 3.894 16 C -0.209 4.209 17 N -0.359 5.359 18 C -0.363 4.363 19 H 0.088 0.912 20 C -0.206 4.206 21 N -0.580 5.580 22 Si 0.732 3.268 23 H -0.219 1.219 24 H -0.219 1.219 25 H -0.209 1.209 26 C -0.169 4.169 27 C -0.007 4.007 28 C -0.006 4.006 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.070 0.930 42 H 0.055 0.945 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.219 0.781 46 H 0.064 0.936 47 H 0.096 0.904 48 H 0.083 0.917 49 H 0.102 0.898 50 H 0.104 0.896 51 H 0.112 0.888 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.764 -9.128 -4.506 15.557 hybrid contribution -0.185 0.745 0.846 1.142 sum -11.948 -8.383 -3.660 15.048 Atomic orbital electron populations 1.21751 0.94197 1.01981 1.02235 1.21533 0.96058 1.00517 0.94684 0.90286 1.21588 0.95203 1.00674 0.97656 1.21951 0.96001 1.02243 0.97392 1.21832 0.98666 0.97257 0.83804 1.48117 1.06991 1.60260 1.17930 1.20385 0.87904 0.77341 0.83796 1.90773 1.73921 1.46598 1.27906 1.20085 0.88019 0.84208 0.78273 1.90767 1.66994 1.32234 1.50798 1.48171 1.07938 1.13503 1.61407 1.21719 0.93449 0.83845 1.01505 1.22237 0.99361 0.97510 0.98444 1.19534 0.91351 0.92022 0.86485 1.22205 1.01190 0.99737 0.97758 1.42511 1.59863 1.30283 1.03220 1.19116 1.23987 1.02112 0.91127 0.91181 1.24672 1.00492 0.98567 0.96917 1.69643 1.41052 1.36288 1.11012 0.86296 0.78091 0.82389 0.80041 1.21884 1.21906 1.20863 1.22107 1.00936 0.94593 0.99252 1.21717 0.77740 0.99103 1.02134 1.21753 0.78372 1.01124 0.99350 0.92524 0.92117 0.92349 0.91766 0.91302 0.90141 0.90602 0.89640 0.90685 0.91918 0.88510 0.90395 0.92970 0.94500 0.92500 0.93051 0.78140 0.93573 0.90379 0.91699 0.89752 0.89595 0.88847 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.20 37.16 0.34 -0.69 16 2 C -0.11 -0.98 2.87 -90.50 -0.26 -1.24 16 3 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.11 -0.95 5.17 -26.69 -0.14 -1.09 16 5 C -0.14 -1.36 6.08 -26.61 -0.16 -1.52 16 6 C 0.11 1.20 6.36 -3.71 -0.02 1.17 16 7 N -0.60 -7.68 2.97 -173.27 -0.51 -8.19 16 8 C 0.52 8.49 5.47 -11.59 -0.06 8.42 16 9 O -0.52 -9.59 16.53 5.49 0.09 -9.50 16 10 C 0.51 8.84 5.48 -11.58 -0.06 8.78 16 11 O -0.53 -10.23 16.51 5.50 0.09 -10.13 16 12 N -0.58 -9.57 2.98 -173.54 -0.52 -10.08 16 13 C 0.12 1.95 6.07 -3.94 -0.02 1.92 16 14 C -0.14 -2.32 4.69 -26.83 -0.13 -2.44 16 15 C 0.20 3.55 0.74 -131.78 -0.10 3.45 16 16 C -0.15 -2.59 8.44 37.16 0.31 -2.28 16 17 N -0.72 -15.68 4.14 -47.20 -0.20 -15.87 16 18 C -0.23 -5.73 8.68 -15.06 -0.13 -5.86 16 19 H 0.07 1.71 6.70 -52.49 -0.35 1.36 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 21 N -0.93 -26.03 13.06 55.49 0.72 -25.30 16 22 Si 0.90 21.12 29.55 -169.99 -5.02 16.09 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C -0.13 -2.08 4.96 -26.61 -0.13 -2.21 16 27 C 0.11 1.87 6.15 -3.71 -0.02 1.84 16 28 C 0.12 1.22 5.70 -3.71 -0.02 1.20 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.09 1.10 6.30 -51.93 -0.33 0.78 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.99 6.31 -51.93 -0.33 0.67 16 39 H 0.10 1.81 7.74 -51.93 -0.40 1.41 16 40 H 0.08 1.39 7.31 -51.93 -0.38 1.01 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 1.05 7.27 -51.93 -0.38 0.67 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.38 9.06 6.46 -40.82 -0.26 8.80 16 46 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 47 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.08 1.46 6.94 -51.93 -0.36 1.10 16 50 H 0.09 1.37 7.03 -51.93 -0.37 1.00 16 51 H 0.09 1.09 7.04 -51.93 -0.37 0.73 16 52 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 398.16 15.07 6.00 6.00 Total: -1.00 -29.71 398.16 -9.05 -38.75 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -9.00 Total: 9.14 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: -0.70 Total: 9.09 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: -0.50 Total: -59.45 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: 0.18 Total: -19.63 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.71 -9.05 -38.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717302311.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.984 kcal (2) G-P(sol) polarization free energy of solvation -29.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds