Wall clock time and date at job start Tue Mar 31 2020 21:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.51952 * 2 1 4 4 C 1.53035 * 109.49588 * 120.08064 * 2 1 3 5 5 C 1.53045 * 109.53765 * 181.31672 * 4 2 1 6 6 C 1.53192 * 109.31423 * 298.63837 * 5 4 2 7 7 N 1.46928 * 108.77543 * 54.63228 * 6 5 4 8 8 C 1.34770 * 120.63004 * 126.37352 * 7 6 5 9 9 O 1.21353 * 119.99812 * 174.95667 * 8 7 6 10 10 C 1.49449 * 120.00333 * 354.95490 * 8 7 6 11 11 O 1.21345 * 119.99926 * 85.36270 * 10 8 7 12 12 N 1.34781 * 120.00111 * 265.37161 * 10 8 7 13 13 C 1.46922 * 120.62971 * 4.76272 * 12 10 8 14 14 C 1.52759 * 109.01161 * 233.58993 * 13 12 10 15 15 C 1.53044 * 109.38118 * 305.58619 * 14 13 12 16 16 C 1.52995 * 109.45930 * 181.26086 * 15 14 13 17 17 N 1.46497 * 109.46100 * 301.22151 * 15 14 13 18 18 C 1.36935 * 119.99947 * 300.06534 * 17 15 14 19 19 H 1.08000 * 119.99996 * 0.02562 * 18 17 15 20 20 C 1.38813 * 119.99859 * 180.02562 * 18 17 15 21 21 N 1.31616 * 120.00064 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99985 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47111 * 89.99995 * 22 20 18 24 24 H 1.48494 * 109.47252 * 209.99770 * 22 20 18 25 25 H 1.48499 * 109.47262 * 330.00378 * 22 20 18 26 26 C 1.53038 * 109.53452 * 61.24147 * 15 14 13 27 27 C 1.46924 * 120.62955 * 185.05008 * 12 10 8 28 28 C 1.46928 * 118.74006 * 306.38998 * 7 6 5 29 29 H 1.09003 * 109.46798 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47638 * 300.07834 * 1 2 3 31 31 H 1.09001 * 109.46884 * 60.08187 * 1 2 3 32 32 H 1.08995 * 109.46116 * 61.30159 * 4 2 1 33 33 H 1.08997 * 109.46525 * 301.33617 * 4 2 1 34 34 H 1.08995 * 109.49902 * 178.68039 * 5 4 2 35 35 H 1.09002 * 109.49427 * 58.58397 * 5 4 2 36 36 H 1.09002 * 109.58703 * 174.41925 * 6 5 4 37 37 H 1.09000 * 109.58197 * 294.84820 * 6 5 4 38 38 H 1.09005 * 109.58712 * 353.42242 * 13 12 10 39 39 H 1.09001 * 109.58527 * 113.84771 * 13 12 10 40 40 H 1.08998 * 109.56295 * 185.55206 * 14 13 12 41 41 H 1.08997 * 109.38806 * 65.51167 * 14 13 12 42 42 H 1.09003 * 109.46895 * 299.93107 * 16 15 14 43 43 H 1.08991 * 109.47230 * 59.93338 * 16 15 14 44 44 H 1.09005 * 109.46771 * 179.97438 * 16 15 14 45 45 H 0.97009 * 119.99870 * 120.06586 * 17 15 14 46 46 H 0.97005 * 120.00344 * 180.02562 * 21 20 18 47 47 H 1.09003 * 109.50195 * 178.68337 * 26 15 14 48 48 H 1.09000 * 109.52965 * 58.59918 * 26 15 14 49 49 H 1.09006 * 109.58229 * 246.15248 * 27 12 10 50 50 H 1.08995 * 109.59259 * 6.43422 * 27 12 10 51 51 H 1.08996 * 109.58825 * 173.39351 * 28 7 6 52 52 H 1.09001 * 109.58499 * 293.68511 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0407 -0.7231 1.2483 5 6 3.5708 -0.6950 1.2660 6 6 4.1053 -1.4266 0.0308 7 7 3.5046 -0.8290 -1.1696 8 6 4.2812 -0.3855 -2.1779 9 8 3.7724 0.0216 -3.2016 10 6 5.7688 -0.3950 -2.0353 11 8 6.3972 -1.3988 -2.2999 12 7 6.4124 0.7111 -1.6125 13 6 5.6593 1.8995 -1.1890 14 6 6.1633 3.1122 -1.9693 15 6 7.6790 3.2335 -1.7961 16 6 8.1813 4.4657 -2.5512 17 7 7.9983 3.3699 -0.3728 18 6 7.4968 4.4237 0.3434 19 1 6.8656 5.1541 -0.1408 20 6 7.7998 4.5532 1.6919 21 7 8.5687 3.6628 2.2821 22 14 7.1163 5.9912 2.6688 23 1 5.8051 5.6131 3.2545 24 1 8.0619 6.3435 3.7583 25 1 6.9384 7.1601 1.7704 26 6 8.3596 1.9813 -2.3536 27 6 7.8805 0.7537 -1.5724 28 6 2.0413 -0.7238 -1.2497 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5150 0.8892 31 1 -0.3633 0.5126 -0.8907 32 1 1.6967 -1.7572 1.2352 33 1 1.6582 -0.2245 2.1389 34 1 3.9334 -1.1896 2.1671 35 1 3.9159 0.3389 1.2540 36 1 5.1896 -1.3245 -0.0137 37 1 3.8375 -2.4817 0.0867 38 1 4.5986 1.7513 -1.3917 39 1 5.8098 2.0664 -0.1224 40 1 5.6808 4.0143 -1.5933 41 1 5.9267 2.9864 -3.0258 42 1 7.9445 4.3643 -3.6104 43 1 7.6967 5.3576 -2.1543 44 1 9.2608 4.5525 -2.4276 45 1 8.5650 2.7136 0.0622 46 1 8.7801 3.7530 3.2245 47 1 9.4405 2.0785 -2.2513 48 1 8.1029 1.8653 -3.4066 49 1 8.2158 0.8253 -0.5376 50 1 8.2849 -0.1512 -2.0257 51 1 1.7638 -0.1578 -2.1389 52 1 1.6055 -1.7215 -1.3006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717302311.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:37 Heat of formation + Delta-G solvation = -80.942676 kcal Electronic energy + Delta-G solvation = -32041.119773 eV Core-core repulsion = 28039.677717 eV Total energy + Delta-G solvation = -4001.442056 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.27281 -40.61358 -39.32847 -38.67399 -36.19125 -34.95603 -34.20415 -32.90973 -32.31103 -30.91325 -29.52649 -28.17917 -27.16072 -25.91702 -25.07840 -24.42865 -23.36321 -23.05123 -21.16260 -20.55276 -19.54690 -19.00639 -18.87404 -18.14798 -17.66485 -16.59852 -16.31099 -16.10275 -16.07796 -15.69383 -15.57661 -15.43535 -15.30303 -15.03093 -14.94685 -14.49570 -14.46277 -14.15213 -14.12944 -13.60649 -13.55648 -13.22927 -13.02240 -12.93187 -12.83501 -12.72512 -12.70513 -12.56752 -12.55615 -12.17521 -12.13521 -12.07281 -11.89821 -11.83893 -11.66716 -11.47913 -11.34744 -11.14878 -10.87485 -10.70533 -9.91448 -9.86575 -8.89643 -7.84304 -5.09924 0.87388 0.95645 1.42343 1.49885 1.52415 1.58333 2.16570 2.61897 2.97177 3.49141 3.65346 3.77294 3.80689 3.83792 3.84295 3.90323 3.94783 4.11476 4.20041 4.21762 4.32538 4.35676 4.46215 4.55824 4.56973 4.63571 4.69735 4.72333 4.74734 4.79496 4.81883 4.90114 4.96363 4.99462 5.05181 5.06105 5.09909 5.15798 5.20030 5.22863 5.27052 5.31968 5.36357 5.48982 5.49318 5.58310 5.67794 5.91193 6.05866 6.37383 6.57050 6.62079 7.45726 8.19498 8.44843 9.38874 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010223 B = 0.004427 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.276761 B = 6322.790602 C = 7807.374306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.104 4.104 3 H 0.059 0.941 4 C -0.109 4.109 5 C -0.134 4.134 6 C 0.104 3.896 7 N -0.588 5.588 8 C 0.519 3.481 9 O -0.547 6.547 10 C 0.513 3.487 11 O -0.553 6.553 12 N -0.575 5.575 13 C 0.129 3.871 14 C -0.130 4.130 15 C 0.191 3.809 16 C -0.144 4.144 17 N -0.721 5.721 18 C -0.213 4.213 19 H 0.074 0.926 20 C -0.068 4.068 21 N -0.966 5.966 22 Si 0.953 3.047 23 H -0.291 1.291 24 H -0.304 1.304 25 H -0.275 1.275 26 C -0.122 4.122 27 C 0.117 3.883 28 C 0.112 3.888 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.100 0.900 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.042 0.958 44 H 0.045 0.955 45 H 0.374 0.626 46 H 0.246 0.754 47 H 0.086 0.914 48 H 0.080 0.920 49 H 0.070 0.930 50 H 0.091 0.909 51 H 0.080 0.920 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.452 -9.474 -4.381 17.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 H 0.077 0.923 4 C -0.146 4.146 5 C -0.172 4.172 6 C -0.018 4.018 7 N -0.322 5.322 8 C 0.302 3.698 9 O -0.424 6.424 10 C 0.296 3.704 11 O -0.432 6.432 12 N -0.307 5.307 13 C 0.007 3.993 14 C -0.171 4.171 15 C 0.101 3.899 16 C -0.203 4.203 17 N -0.362 5.362 18 C -0.345 4.345 19 H 0.092 0.908 20 C -0.261 4.261 21 N -0.617 5.617 22 Si 0.784 3.216 23 H -0.219 1.219 24 H -0.231 1.231 25 H -0.200 1.200 26 C -0.161 4.161 27 C -0.004 4.004 28 C -0.009 4.009 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.118 0.882 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.207 0.793 46 H 0.055 0.945 47 H 0.104 0.896 48 H 0.099 0.901 49 H 0.088 0.912 50 H 0.110 0.890 51 H 0.099 0.901 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.471 -9.615 -5.019 17.295 hybrid contribution 0.313 0.854 0.949 1.315 sum -13.158 -8.761 -4.070 16.323 Atomic orbital electron populations 1.21718 0.92388 1.03047 1.02511 1.21495 0.97444 0.99221 0.94198 0.92280 1.21585 0.93643 1.01862 0.97523 1.21924 0.97394 1.00659 0.97209 1.21994 0.97526 0.98714 0.83574 1.48251 1.07959 1.58617 1.17336 1.20210 0.87498 0.77864 0.84266 1.90755 1.74112 1.48472 1.29078 1.20330 0.88675 0.83795 0.77648 1.90743 1.67687 1.32890 1.51858 1.48168 1.08075 1.13336 1.61100 1.21512 0.93915 0.83893 0.99985 1.22173 0.98476 0.97183 0.99225 1.19785 0.92099 0.93538 0.84499 1.22121 1.00602 0.98358 0.99203 1.42626 1.59404 1.29298 1.04823 1.19373 1.22096 1.01943 0.91060 0.90791 1.25252 1.01912 1.00778 0.98114 1.69777 1.43252 1.38079 1.10632 0.85436 0.77064 0.80446 0.78614 1.21874 1.23150 1.20005 1.22052 1.01226 0.93058 0.99736 1.21678 0.77628 0.99674 1.01458 1.21991 0.76696 1.02486 0.99687 0.91041 0.91527 0.92455 0.89781 0.90488 0.88745 0.93064 0.91714 0.88210 0.91157 0.90837 0.91128 0.91572 0.91773 0.93922 0.93559 0.79268 0.94494 0.89557 0.90139 0.91199 0.89033 0.90136 0.88830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.20 71.98 0.66 -0.99 16 2 C -0.10 -1.69 2.87 -10.72 -0.03 -1.72 16 3 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.11 -1.56 5.17 30.62 0.16 -1.40 16 5 C -0.13 -2.48 6.08 30.67 0.19 -2.30 16 6 C 0.10 2.21 6.36 86.36 0.55 2.76 16 7 N -0.59 -14.59 2.97 -820.47 -2.44 -17.03 16 8 C 0.52 16.70 5.47 87.27 0.48 17.18 16 9 O -0.55 -20.12 16.53 -3.26 -0.05 -20.17 16 10 C 0.51 17.65 5.48 87.27 0.48 18.13 16 11 O -0.55 -21.25 16.51 -3.23 -0.05 -21.30 16 12 N -0.57 -19.00 2.98 -821.31 -2.45 -21.44 16 13 C 0.13 4.30 6.07 86.22 0.52 4.83 16 14 C -0.13 -4.34 4.69 30.53 0.14 -4.20 16 15 C 0.19 6.66 0.74 3.63 0.00 6.66 16 16 C -0.14 -4.73 8.44 71.98 0.61 -4.13 16 17 N -0.72 -31.55 4.14 -303.23 -1.25 -32.81 16 18 C -0.21 -10.47 8.68 84.03 0.73 -9.74 16 19 H 0.07 3.56 6.70 -2.91 -0.02 3.54 16 20 C -0.07 -3.62 5.50 84.86 0.47 -3.15 16 21 N -0.97 -55.07 13.06 21.65 0.28 -54.78 16 22 Si 0.95 43.76 29.55 68.60 2.03 45.79 16 23 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 24 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 26 C -0.12 -3.73 4.96 30.67 0.15 -3.58 16 27 C 0.12 3.79 6.15 86.36 0.53 4.32 16 28 C 0.11 2.18 5.70 86.36 0.49 2.68 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 35 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 1.67 6.30 -2.39 -0.02 1.65 16 37 H 0.10 1.67 8.14 -2.39 -0.02 1.66 16 38 H 0.07 2.24 6.31 -2.38 -0.02 2.22 16 39 H 0.07 2.82 7.74 -2.39 -0.02 2.80 16 40 H 0.07 2.46 7.31 -2.39 -0.02 2.44 16 41 H 0.07 2.04 8.14 -2.39 -0.02 2.03 16 42 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.04 1.51 7.27 -2.39 -0.02 1.49 16 44 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 45 H 0.37 17.92 6.46 -92.70 -0.60 17.32 16 46 H 0.25 13.92 8.31 -92.70 -0.77 13.15 16 47 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 48 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 49 H 0.07 2.48 6.94 -2.38 -0.02 2.46 16 50 H 0.09 2.88 7.03 -2.39 -0.02 2.86 16 51 H 0.08 1.82 7.04 -2.39 -0.02 1.80 16 52 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -63.90 398.16 2.50 -61.40 By element: Atomic # 1 Polarization: 34.70 SS G_CDS: 0.31 Total: 35.01 kcal Atomic # 6 Polarization: 19.21 SS G_CDS: 6.13 Total: 25.34 kcal Atomic # 7 Polarization: -120.21 SS G_CDS: -5.86 Total: -126.06 kcal Atomic # 8 Polarization: -41.37 SS G_CDS: -0.11 Total: -41.48 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -63.90 2.50 -61.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717302311.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.543 kcal (2) G-P(sol) polarization free energy of solvation -63.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds