Wall clock time and date at job start Tue Mar 31 2020 21:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.49878 * 2 1 4 4 C 1.53046 * 109.52387 * 239.92534 * 2 1 3 5 5 C 1.53037 * 109.53654 * 178.66485 * 4 2 1 6 6 C 1.52759 * 109.38368 * 61.24410 * 5 4 2 7 7 N 1.46931 * 109.00787 * 305.58335 * 6 5 4 8 8 C 1.34772 * 120.63004 * 233.59178 * 7 6 5 9 9 O 1.21351 * 119.99832 * 187.15885 * 8 7 6 10 10 C 1.49449 * 120.00527 * 7.14999 * 8 7 6 11 11 O 1.21351 * 119.99589 * 7.50689 * 10 8 7 12 12 N 1.34770 * 120.00440 * 187.50205 * 10 8 7 13 13 C 1.46929 * 120.62951 * 357.86746 * 12 10 8 14 14 C 1.53199 * 108.77222 * 126.41599 * 13 12 10 15 15 C 1.53042 * 109.31303 * 54.63644 * 14 13 12 16 16 C 1.53036 * 109.53737 * 298.63399 * 15 14 13 17 17 H 1.08999 * 109.50091 * 301.38224 * 16 15 14 18 18 C 1.53002 * 109.49978 * 181.31804 * 16 15 14 19 19 N 1.46496 * 109.47246 * 175.00078 * 18 16 15 20 20 C 1.36937 * 119.99847 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99641 * 359.97438 * 20 19 18 22 22 C 1.38809 * 120.00172 * 180.27260 * 20 19 18 23 23 N 1.31619 * 120.00303 * 179.71992 * 22 20 19 24 24 Si 1.86802 * 119.99939 * 359.72711 * 22 20 19 25 25 H 1.48493 * 109.47391 * 89.99679 * 24 22 20 26 26 H 1.48494 * 109.47134 * 209.99852 * 24 22 20 27 27 H 1.48500 * 109.46694 * 329.99559 * 24 22 20 28 28 C 1.46928 * 120.63268 * 177.89508 * 12 10 8 29 29 C 1.46930 * 118.73567 * 53.30856 * 7 6 5 30 30 H 1.09003 * 109.46930 * 299.92911 * 1 2 3 31 31 H 1.08995 * 109.47775 * 59.92941 * 1 2 3 32 32 H 1.09007 * 109.47348 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.45853 * 298.68894 * 4 2 1 34 34 H 1.08997 * 109.45987 * 58.65833 * 4 2 1 35 35 H 1.09009 * 109.49380 * 181.31233 * 5 4 2 36 36 H 1.08998 * 109.50219 * 301.37934 * 5 4 2 37 37 H 1.09004 * 109.51277 * 185.70485 * 6 5 4 38 38 H 1.08995 * 109.43765 * 65.42140 * 6 5 4 39 39 H 1.08996 * 109.58805 * 6.63146 * 13 12 10 40 40 H 1.08997 * 109.70256 * 246.26988 * 13 12 10 41 41 H 1.08999 * 109.49682 * 294.68364 * 14 13 12 42 42 H 1.09003 * 109.52067 * 174.60576 * 14 13 12 43 43 H 1.08997 * 109.45472 * 178.61513 * 15 14 13 44 44 H 1.08995 * 109.45802 * 58.65419 * 15 14 13 45 45 H 1.09004 * 109.46784 * 54.99459 * 18 16 15 46 46 H 1.09004 * 109.46676 * 295.00489 * 18 16 15 47 47 H 0.96997 * 120.00045 * 359.97438 * 19 18 16 48 48 H 0.97001 * 120.00228 * 180.02562 * 23 22 20 49 49 H 1.08999 * 109.58609 * 113.79832 * 28 12 10 50 50 H 1.09001 * 109.58800 * 353.37057 * 28 12 10 51 51 H 1.08994 * 109.58121 * 66.43573 * 29 7 6 52 52 H 1.08996 * 109.58423 * 186.71478 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0414 -0.7229 -1.2483 5 6 3.5714 -0.6940 -1.2655 6 6 4.1061 -1.4204 -0.0326 7 7 3.5047 -0.8282 1.1701 8 6 4.2808 -0.3842 2.1785 9 8 3.7737 -0.0177 3.2182 10 6 5.7659 -0.3434 2.0163 11 8 6.2649 -0.5790 0.9356 12 7 6.5509 -0.0449 3.0703 13 6 5.9597 0.2883 4.3735 14 6 6.5753 -0.6216 5.4413 15 6 8.1001 -0.4990 5.3930 16 6 8.6067 -0.9520 4.0218 17 1 8.3000 -1.9825 3.8428 18 6 10.1336 -0.8602 3.9857 19 7 10.6257 -1.4054 2.7181 20 6 11.9701 -1.4292 2.4590 21 1 12.6676 -1.0456 3.1890 22 6 12.4362 -1.9406 1.2557 23 7 13.7280 -1.9583 1.0043 24 14 11.2298 -2.6034 -0.0072 25 1 10.8154 -1.5071 -0.9190 26 1 11.8796 -3.6824 -0.7937 27 1 10.0354 -3.1477 0.6874 28 6 8.0142 -0.0459 2.9379 29 6 2.0413 -0.7236 1.2497 30 1 -0.3633 0.5128 0.8907 31 1 -0.3634 0.5149 -0.8893 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6977 -1.7572 -1.2353 34 1 1.6589 -0.2243 -2.1389 35 1 3.9344 -1.1886 -2.1666 36 1 3.9160 0.3400 -1.2541 37 1 5.1901 -1.3143 0.0109 38 1 3.8424 -2.4763 -0.0910 39 1 4.8818 0.1310 4.3367 40 1 6.1690 1.3300 4.6164 41 1 6.2872 -1.6551 5.2487 42 1 6.2172 -0.3215 6.4261 43 1 8.5395 -1.1268 6.1681 44 1 8.3863 0.5392 5.5610 45 1 10.5516 -1.4322 4.8141 46 1 10.4370 0.1829 4.0748 47 1 9.9993 -1.7503 2.0627 48 1 14.0536 -2.3153 0.1632 49 1 8.3931 0.9685 3.0624 50 1 8.2919 -0.4237 1.9539 51 1 1.6058 -1.7215 1.2980 52 1 1.7632 -0.1600 2.1402 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731525798.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:11 Heat of formation + Delta-G solvation = -54.115198 kcal Electronic energy + Delta-G solvation = -30865.182712 eV Core-core repulsion = 26864.903983 eV Total energy + Delta-G solvation = -4000.278729 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.40444 -40.48645 -39.15571 -38.84416 -36.78729 -34.97099 -34.30574 -33.32352 -32.92248 -31.85893 -28.68638 -27.63426 -27.34375 -26.31652 -24.60755 -23.81757 -23.31658 -22.67110 -21.69104 -20.85316 -20.31462 -19.66839 -18.28699 -18.08389 -17.48823 -17.04609 -16.67885 -16.44471 -16.15195 -15.89912 -15.68682 -15.59009 -15.28596 -15.07357 -14.96897 -14.63008 -14.48506 -14.25856 -14.23601 -13.88913 -13.83601 -13.60968 -13.43714 -13.22591 -13.02546 -12.87075 -12.65217 -12.43208 -12.21808 -12.15659 -12.07541 -12.00058 -11.90206 -11.79460 -11.72367 -11.45581 -11.37622 -11.02109 -10.91755 -10.04376 -9.83804 -9.78732 -9.31916 -8.05425 -5.38114 0.17226 1.12339 1.35064 1.37999 1.43455 1.95887 2.23322 2.44726 2.95401 3.26437 3.50293 3.69636 3.79948 3.81009 3.83108 3.91233 3.95392 4.03673 4.09676 4.25657 4.28671 4.35105 4.43908 4.53105 4.61132 4.61745 4.66822 4.70612 4.73236 4.80870 4.85494 4.88370 4.91928 4.98220 4.99364 5.04498 5.08810 5.12483 5.15772 5.20726 5.25667 5.31024 5.36006 5.44035 5.45016 5.56080 5.73838 5.86517 6.16150 6.19084 6.57919 6.78967 7.04976 7.81697 7.98931 9.16086 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012901 B = 0.003264 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.814617 B = 8575.237978 C =10507.291726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 H 0.061 0.939 4 C -0.113 4.113 5 C -0.128 4.128 6 C 0.043 3.957 7 N -0.571 5.571 8 C 0.514 3.486 9 O -0.522 6.522 10 C 0.495 3.505 11 O -0.537 6.537 12 N -0.569 5.569 13 C 0.044 3.956 14 C -0.123 4.123 15 C -0.109 4.109 16 C -0.097 4.097 17 H 0.063 0.937 18 C 0.162 3.838 19 N -0.761 5.761 20 C -0.231 4.231 21 H 0.062 0.938 22 C -0.060 4.060 23 N -0.981 5.981 24 Si 0.948 3.052 25 H -0.281 1.281 26 H -0.291 1.291 27 H -0.260 1.260 28 C 0.116 3.884 29 C 0.108 3.892 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.051 0.949 37 H 0.134 0.866 38 H 0.078 0.922 39 H 0.154 0.846 40 H 0.080 0.920 41 H 0.057 0.943 42 H 0.104 0.896 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.363 0.637 48 H 0.258 0.742 49 H 0.083 0.917 50 H 0.068 0.932 51 H 0.088 0.912 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.134 3.961 2.677 32.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.122 4.122 3 H 0.080 0.920 4 C -0.150 4.150 5 C -0.166 4.166 6 C -0.077 4.077 7 N -0.302 5.302 8 C 0.297 3.703 9 O -0.401 6.401 10 C 0.279 3.721 11 O -0.417 6.417 12 N -0.300 5.300 13 C -0.075 4.075 14 C -0.161 4.161 15 C -0.147 4.147 16 C -0.117 4.117 17 H 0.082 0.918 18 C 0.035 3.965 19 N -0.406 5.406 20 C -0.362 4.362 21 H 0.080 0.920 22 C -0.251 4.251 23 N -0.632 5.632 24 Si 0.776 3.224 25 H -0.207 1.207 26 H -0.218 1.218 27 H -0.186 1.186 28 C -0.007 4.007 29 C -0.013 4.013 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.070 0.930 37 H 0.150 0.850 38 H 0.096 0.904 39 H 0.170 0.830 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.122 0.878 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.052 0.948 46 H 0.052 0.948 47 H 0.196 0.804 48 H 0.067 0.933 49 H 0.101 0.899 50 H 0.087 0.913 51 H 0.107 0.893 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -31.938 4.070 2.729 32.312 hybrid contribution 0.394 -0.456 -1.122 1.274 sum -31.544 3.614 1.607 31.791 Atomic orbital electron populations 1.21727 0.92436 1.02910 1.02663 1.21476 0.97342 0.99197 0.94180 0.92006 1.21634 0.94184 1.01510 0.97719 1.21750 0.96751 1.00591 0.97487 1.23147 1.04247 0.97197 0.83156 1.48116 1.07631 1.56911 1.17565 1.19875 0.87433 0.78809 0.84156 1.90270 1.74160 1.49802 1.25915 1.20427 0.88612 0.78523 0.84505 1.90379 1.75220 1.50304 1.25830 1.48228 1.06541 1.63990 1.11208 1.23480 1.04398 0.99792 0.79843 1.21867 0.94641 0.99771 0.99811 1.21541 0.95951 1.02675 0.94510 1.21595 0.94280 0.99187 0.96632 0.91840 1.20820 0.91586 0.96869 0.87201 1.42822 1.03399 1.75526 1.18896 1.19061 0.83690 1.32704 1.00788 0.91979 1.25410 0.97194 1.02486 1.00036 1.69862 1.13642 1.53862 1.25816 0.85515 0.79042 0.78192 0.79677 1.20688 1.21767 1.18554 1.21743 0.77910 1.00915 1.00094 1.22048 0.76926 1.02403 0.99884 0.92093 0.91495 0.91468 0.90629 0.90493 0.89530 0.93015 0.84965 0.90376 0.82971 0.90211 0.92456 0.87777 0.90350 0.90404 0.94829 0.94839 0.80434 0.93281 0.89928 0.91343 0.89350 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.20 71.98 0.66 -0.48 16 2 C -0.10 -1.27 2.87 -10.72 -0.03 -1.30 16 3 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 4 C -0.11 -1.34 5.17 30.62 0.16 -1.18 16 5 C -0.13 -2.11 6.06 30.53 0.19 -1.92 16 6 C 0.04 0.88 6.23 86.22 0.54 1.42 16 7 N -0.57 -11.87 2.98 -821.32 -2.45 -14.31 16 8 C 0.51 12.82 7.66 87.27 0.67 13.49 16 9 O -0.52 -13.12 12.48 -3.25 -0.04 -13.16 16 10 C 0.50 14.40 7.65 87.27 0.67 15.07 16 11 O -0.54 -18.11 12.54 -3.25 -0.04 -18.16 16 12 N -0.57 -15.44 2.97 -820.47 -2.44 -17.87 16 13 C 0.04 0.94 6.23 86.36 0.54 1.48 16 14 C -0.12 -2.28 6.08 30.68 0.19 -2.09 16 15 C -0.11 -2.33 5.17 30.62 0.16 -2.18 16 16 C -0.10 -2.87 2.37 -10.72 -0.03 -2.90 16 17 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 18 C 0.16 6.06 5.65 86.38 0.49 6.54 16 19 N -0.76 -36.58 5.18 -343.45 -1.78 -38.36 16 20 C -0.23 -13.50 10.47 84.03 0.88 -12.62 16 21 H 0.06 3.91 8.06 -2.91 -0.02 3.88 16 22 C -0.06 -3.61 5.50 84.86 0.47 -3.14 16 23 N -0.98 -64.04 13.97 21.65 0.30 -63.74 16 24 Si 0.95 47.84 27.73 68.60 1.90 49.74 16 25 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 26 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 27 H -0.26 -12.27 6.52 99.48 0.65 -11.62 16 28 C 0.12 3.55 5.51 86.36 0.48 4.02 16 29 C 0.11 1.64 5.70 86.36 0.49 2.13 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.44 8.14 -2.38 -0.02 0.43 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.75 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.13 3.55 3.81 -76.82 -0.29 3.26 16 38 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.15 3.40 3.78 -82.15 -0.31 3.08 16 40 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 41 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 46 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 47 H 0.36 17.23 4.77 -92.71 -0.44 16.79 16 48 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 49 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 50 H 0.07 2.53 6.23 -2.39 -0.01 2.52 16 51 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.09 1.46 7.06 -2.39 -0.02 1.45 16 Total: -1.00 -71.50 392.83 1.79 -69.71 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: -0.18 Total: 29.80 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: 6.51 Total: 16.35 kcal Atomic # 7 Polarization: -127.92 SS G_CDS: -6.36 Total: -134.28 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -0.08 Total: -31.32 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 1.90 Total: 49.74 kcal Total: -71.50 1.79 -69.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731525798.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.594 kcal (2) G-P(sol) polarization free energy of solvation -71.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds