Wall clock time and date at job start Tue Mar 31 2020 20:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47415 * 2 1 4 4 C 1.53005 * 109.46718 * 240.00050 * 2 1 3 5 5 C 1.52996 * 109.47440 * 299.99996 * 4 2 1 6 6 C 1.53004 * 109.46923 * 300.00205 * 5 4 2 7 7 C 1.52996 * 109.47175 * 60.00077 * 6 5 4 8 8 C 1.52995 * 109.47097 * 120.00213 * 2 1 3 9 9 H 1.09006 * 109.46995 * 179.97438 * 8 2 1 10 10 C 1.52999 * 109.47436 * 299.99736 * 8 2 1 11 11 C 1.50699 * 109.47385 * 185.00163 * 10 8 2 12 12 O 1.21280 * 119.99818 * 359.97438 * 11 10 8 13 13 N 1.34772 * 119.99926 * 179.97438 * 11 10 8 14 14 C 1.46499 * 119.99972 * 179.97438 * 13 11 10 15 15 C 1.53519 * 114.16804 * 154.99809 * 14 13 11 16 16 N 1.47483 * 87.92772 * 87.62532 * 15 14 13 17 17 C 1.46902 * 110.99811 * 138.70065 * 16 15 14 18 18 C 1.50702 * 109.47027 * 169.99675 * 17 16 15 19 19 O 1.21293 * 120.00255 * 0.02562 * 18 17 16 20 20 N 1.34783 * 120.00004 * 180.02562 * 18 17 16 21 21 C 1.37092 * 119.99804 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00499 * 0.02562 * 21 20 18 23 23 C 1.38956 * 119.99671 * 179.72159 * 21 20 18 24 24 N 1.31414 * 120.00152 * 0.27554 * 23 21 20 25 25 Si 1.86803 * 119.99914 * 180.27723 * 23 21 20 26 26 H 1.48496 * 109.47187 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 119.99961 * 25 23 21 28 28 H 1.48498 * 109.47018 * 240.00007 * 25 23 21 29 29 C 1.47474 * 87.84007 * 27.01105 * 16 15 14 30 30 H 1.08999 * 109.47191 * 300.00392 * 1 2 3 31 31 H 1.09005 * 109.47153 * 59.99653 * 1 2 3 32 32 H 1.08995 * 109.47415 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47029 * 60.00545 * 4 2 1 34 34 H 1.09005 * 109.46892 * 179.97438 * 4 2 1 35 35 H 1.09006 * 109.46769 * 59.99909 * 5 4 2 36 36 H 1.08999 * 109.47565 * 180.02562 * 5 4 2 37 37 H 1.09004 * 109.47020 * 179.97438 * 6 5 4 38 38 H 1.08999 * 109.47506 * 299.99578 * 6 5 4 39 39 H 1.09001 * 109.47421 * 180.02562 * 7 6 5 40 40 H 1.09006 * 109.47576 * 59.99647 * 7 6 5 41 41 H 1.09002 * 109.46693 * 64.99882 * 10 8 2 42 42 H 1.09003 * 109.46666 * 305.00541 * 10 8 2 43 43 H 0.97004 * 120.00322 * 0.02562 * 13 11 10 44 44 H 1.08993 * 113.25817 * 22.05270 * 14 13 11 45 45 H 1.08998 * 113.47921 * 332.86187 * 15 14 13 46 46 H 1.08996 * 113.52556 * 202.39552 * 15 14 13 47 47 H 1.09004 * 109.47131 * 49.99918 * 17 16 15 48 48 H 1.08994 * 109.47471 * 289.99668 * 17 16 15 49 49 H 0.97000 * 119.99715 * 359.97438 * 20 18 17 50 50 H 0.96991 * 119.99827 * 179.97438 * 24 23 21 51 51 H 1.08995 * 113.47997 * 87.75390 * 29 16 15 52 52 H 1.09002 * 113.47897 * 218.22785 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5299 -2.1637 -1.2494 6 6 2.0399 -2.8850 -0.0001 7 6 1.5299 -2.1638 1.2491 8 6 2.0399 -0.7213 1.2492 9 1 3.1300 -0.7217 1.2489 10 6 1.5300 -0.0001 2.4985 11 6 2.1309 -0.6354 3.7258 12 8 2.8918 -1.5731 3.6124 13 7 1.8229 -0.1616 4.9493 14 6 2.4066 -0.7796 6.1424 15 6 2.4875 0.1542 7.3583 16 7 1.1206 -0.2735 7.7103 17 6 0.9920 -0.4860 9.1581 18 6 -0.4605 -0.6796 9.5103 19 8 -1.3053 -0.6445 8.6408 20 7 -0.8207 -0.8918 10.7917 21 6 -2.1419 -1.0684 11.1120 22 1 -2.8941 -1.0380 10.3376 23 6 -2.5127 -1.2929 12.4322 24 7 -1.5974 -1.3305 13.3745 25 14 -4.3122 -1.5413 12.8676 26 1 -5.1364 -1.4528 11.6356 27 1 -4.4912 -2.8783 13.4885 28 1 -4.7396 -0.4897 13.8250 29 6 1.3980 -1.5427 7.0125 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6766 -0.2074 -2.1392 34 1 3.1299 -0.7209 -1.2496 35 1 0.4398 -2.1637 -1.2493 36 1 1.8935 -2.6777 -2.1391 37 1 1.6762 -3.9126 0.0001 38 1 3.1299 -2.8851 -0.0001 39 1 1.8937 -2.6774 2.1391 40 1 0.4399 -2.1638 1.2492 41 1 0.4437 -0.0770 2.5444 42 1 1.8184 1.0502 2.4548 43 1 1.2141 0.5881 5.0400 44 1 3.3271 -1.3261 5.9375 45 1 2.5574 1.2088 7.0919 46 1 3.2383 -0.1468 8.0888 47 1 1.3819 0.3826 9.6889 48 1 1.5571 -1.3721 9.4469 49 1 -0.1450 -0.9202 11.4871 50 1 -1.8563 -1.4868 14.2960 51 1 1.8582 -2.2973 7.6502 52 1 0.5447 -1.9262 6.4530 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732119645.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:02 Heat of formation + Delta-G solvation = -59.631302 kcal Electronic energy + Delta-G solvation = -29245.404118 eV Core-core repulsion = 25244.886192 eV Total energy + Delta-G solvation = -4000.517925 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.77617 -39.93790 -38.52938 -37.66456 -34.06931 -33.73585 -33.04299 -31.88093 -31.25344 -29.91838 -28.09286 -26.47323 -25.91376 -25.42371 -23.64883 -22.59637 -22.04951 -20.48504 -19.81862 -19.23089 -18.62408 -17.91030 -17.20906 -16.29758 -16.05190 -15.96358 -15.57062 -15.23374 -15.14712 -14.64528 -14.62112 -14.43609 -14.02630 -13.80816 -13.62741 -13.28650 -13.17889 -13.08802 -12.77729 -12.76537 -12.48915 -12.09638 -12.02553 -11.79925 -11.59137 -11.57054 -11.41854 -11.27952 -11.13171 -11.07055 -10.95542 -10.68479 -10.42041 -10.38591 -10.34458 -10.21943 -10.15023 -9.67706 -9.50825 -9.05483 -8.81574 -8.21000 -7.95713 -6.41481 -3.82105 2.56208 3.04932 3.16176 3.26574 3.33896 3.90578 4.00969 4.23643 4.35679 4.41851 4.44604 4.46392 4.74396 4.85699 4.89339 4.97286 5.01295 5.05645 5.13044 5.13999 5.19591 5.26548 5.36836 5.37603 5.40473 5.41211 5.46568 5.55788 5.58909 5.62010 5.66233 5.69373 5.71108 5.73446 5.80867 5.87654 5.93537 5.99638 6.02472 6.05613 6.14416 6.25402 6.32457 6.36709 6.48556 6.54323 7.11376 7.49250 7.55562 8.06626 8.18930 8.62577 9.18991 9.55198 10.07555 10.76494 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019810 B = 0.001862 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.113115 B =15036.429178 C =15756.247739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.088 4.088 3 H 0.068 0.932 4 C -0.113 4.113 5 C -0.122 4.122 6 C -0.116 4.116 7 C -0.123 4.123 8 C -0.063 4.063 9 H 0.076 0.924 10 C -0.140 4.140 11 C 0.515 3.485 12 O -0.541 6.541 13 N -0.703 5.703 14 C 0.117 3.883 15 C -0.015 4.015 16 N -0.440 5.440 17 C 0.008 3.992 18 C 0.447 3.553 19 O -0.576 6.576 20 N -0.567 5.567 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 C -0.008 4.008 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.408 0.592 44 H 0.109 0.891 45 H 0.088 0.912 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.061 0.939 49 H 0.391 0.609 50 H 0.270 0.730 51 H 0.076 0.924 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.357 2.917 -23.784 26.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.106 4.106 3 H 0.086 0.914 4 C -0.150 4.150 5 C -0.160 4.160 6 C -0.154 4.154 7 C -0.160 4.160 8 C -0.081 4.081 9 H 0.095 0.905 10 C -0.180 4.180 11 C 0.303 3.697 12 O -0.418 6.418 13 N -0.353 5.353 14 C 0.010 3.990 15 C -0.145 4.145 16 N -0.162 5.162 17 C -0.124 4.124 18 C 0.232 3.768 19 O -0.459 6.459 20 N -0.205 5.205 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.181 4.181 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.139 4.139 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.115 0.885 42 H 0.110 0.890 43 H 0.244 0.756 44 H 0.127 0.873 45 H 0.107 0.893 46 H 0.098 0.902 47 H 0.106 0.894 48 H 0.079 0.921 49 H 0.224 0.776 50 H 0.080 0.920 51 H 0.094 0.906 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.694 2.655 -24.398 26.770 hybrid contribution -0.163 -0.223 1.450 1.476 sum 10.531 2.432 -22.947 25.365 Atomic orbital electron populations 1.22015 0.95294 1.02342 1.01556 1.21140 0.96029 0.98897 0.94537 0.91363 1.21534 1.00497 0.95761 0.97216 1.21595 1.00952 0.95584 0.97841 1.21488 1.00739 0.98678 0.94486 1.21753 1.00214 0.95079 0.98955 1.20888 1.00723 0.94893 0.91646 0.90527 1.21826 1.02504 1.00991 0.92651 1.20751 0.81015 0.83406 0.84559 1.90656 1.36264 1.28288 1.86638 1.45595 1.48717 1.36300 1.04715 1.21948 0.97237 0.95349 0.84457 1.24293 0.92782 1.01216 0.96180 1.68825 1.22312 1.16834 1.08214 1.22509 0.97729 1.01589 0.90615 1.19668 0.89237 0.84321 0.83600 1.90520 1.51915 1.55510 1.47931 1.41883 1.09026 1.63139 1.06427 1.19740 0.83923 1.45507 0.93506 0.87933 1.25259 0.99958 0.97486 0.95349 1.69617 1.33445 1.50063 1.01322 0.85804 0.82174 0.77773 0.78623 1.19243 1.20781 1.20762 1.24365 0.99310 0.93377 0.96828 0.92455 0.92985 0.91867 0.92209 0.92099 0.91780 0.92504 0.92346 0.92151 0.89959 0.92306 0.88487 0.88952 0.75643 0.87326 0.89329 0.90217 0.89367 0.92142 0.77568 0.91967 0.90612 0.89218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 8.15 37.16 0.30 -0.74 16 2 C -0.09 -0.61 2.72 -90.62 -0.25 -0.85 16 3 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 4 C -0.11 -0.76 5.45 -26.73 -0.15 -0.91 16 5 C -0.12 -0.88 5.65 -26.73 -0.15 -1.03 16 6 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 7 C -0.12 -1.18 4.67 -26.73 -0.12 -1.30 16 8 C -0.06 -0.53 1.61 -90.62 -0.15 -0.68 16 9 H 0.08 0.75 7.96 -51.93 -0.41 0.34 16 10 C -0.14 -1.15 4.67 -27.88 -0.13 -1.28 16 11 C 0.52 5.81 7.55 -10.99 -0.08 5.73 16 12 O -0.54 -7.75 13.56 5.56 0.08 -7.68 16 13 N -0.70 -7.70 5.39 -53.54 -0.29 -7.99 16 14 C 0.12 1.38 4.60 -67.71 -0.31 1.07 16 15 C -0.01 -0.17 7.45 -7.53 -0.06 -0.22 16 16 N -0.44 -6.94 5.82 -246.08 -1.43 -8.37 16 17 C 0.01 0.13 5.30 -4.97 -0.03 0.11 16 18 C 0.45 10.62 7.85 -10.98 -0.09 10.54 16 19 O -0.58 -15.86 16.01 5.55 0.09 -15.77 16 20 N -0.57 -14.46 5.29 -10.96 -0.06 -14.51 16 21 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 22 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 23 C 0.02 0.56 5.50 -17.46 -0.10 0.46 16 24 N -0.90 -24.64 13.05 55.50 0.72 -23.92 16 25 Si 0.93 21.17 29.55 -169.99 -5.02 16.14 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 29 C -0.01 -0.12 7.52 -7.54 -0.06 -0.18 16 30 H 0.06 0.37 6.54 -51.93 -0.34 0.03 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.46 4.81 -51.93 -0.25 0.21 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.08 1.00 5.95 -51.93 -0.31 0.69 16 40 H 0.06 0.55 6.43 -51.93 -0.33 0.21 16 41 H 0.10 0.74 6.71 -51.93 -0.35 0.39 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.41 4.06 8.76 -40.82 -0.36 3.71 16 44 H 0.11 1.28 7.45 -51.93 -0.39 0.90 16 45 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.08 0.78 7.91 -51.93 -0.41 0.37 16 47 H 0.09 1.37 8.08 -51.93 -0.42 0.95 16 48 H 0.06 0.94 7.30 -51.93 -0.38 0.56 16 49 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 50 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 51 H 0.08 1.02 7.42 -51.93 -0.39 0.64 16 52 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 400.80 15.07 6.04 6.04 Total: -1.00 -32.97 400.80 -10.26 -43.23 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -8.73 Total: 11.76 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -1.66 Total: 1.07 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -1.05 Total: -54.79 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: 0.16 Total: -23.45 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.97 -10.26 -43.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732119645.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.399 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds