Wall clock time and date at job start Tue Mar 31 2020 20:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47415 * 2 1 4 4 C 1.53005 * 109.46718 * 240.00050 * 2 1 3 5 5 C 1.52996 * 109.47440 * 299.99996 * 4 2 1 6 6 C 1.53004 * 109.46923 * 300.00205 * 5 4 2 7 7 C 1.52996 * 109.47175 * 60.00077 * 6 5 4 8 8 C 1.52995 * 109.47097 * 120.00213 * 2 1 3 9 9 H 1.09006 * 109.46995 * 179.97438 * 8 2 1 10 10 C 1.52999 * 109.47436 * 299.99736 * 8 2 1 11 11 C 1.50699 * 109.47385 * 185.00163 * 10 8 2 12 12 O 1.21280 * 119.99818 * 359.97438 * 11 10 8 13 13 N 1.34772 * 119.99926 * 179.97438 * 11 10 8 14 14 C 1.46499 * 119.99972 * 179.97438 * 13 11 10 15 15 C 1.53519 * 114.16804 * 154.99809 * 14 13 11 16 16 N 1.47483 * 87.92772 * 87.62532 * 15 14 13 17 17 C 1.46902 * 110.99811 * 138.70065 * 16 15 14 18 18 C 1.50702 * 109.47027 * 169.99675 * 17 16 15 19 19 O 1.21293 * 120.00255 * 0.02562 * 18 17 16 20 20 N 1.34783 * 120.00004 * 180.02562 * 18 17 16 21 21 C 1.37092 * 119.99804 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00499 * 0.02562 * 21 20 18 23 23 C 1.38956 * 119.99671 * 179.72159 * 21 20 18 24 24 N 1.31414 * 120.00152 * 0.27554 * 23 21 20 25 25 Si 1.86803 * 119.99914 * 180.27723 * 23 21 20 26 26 H 1.48496 * 109.47187 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 119.99961 * 25 23 21 28 28 H 1.48498 * 109.47018 * 240.00007 * 25 23 21 29 29 C 1.47474 * 87.84007 * 27.01105 * 16 15 14 30 30 H 1.08999 * 109.47191 * 300.00392 * 1 2 3 31 31 H 1.09005 * 109.47153 * 59.99653 * 1 2 3 32 32 H 1.08995 * 109.47415 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47029 * 60.00545 * 4 2 1 34 34 H 1.09005 * 109.46892 * 179.97438 * 4 2 1 35 35 H 1.09006 * 109.46769 * 59.99909 * 5 4 2 36 36 H 1.08999 * 109.47565 * 180.02562 * 5 4 2 37 37 H 1.09004 * 109.47020 * 179.97438 * 6 5 4 38 38 H 1.08999 * 109.47506 * 299.99578 * 6 5 4 39 39 H 1.09001 * 109.47421 * 180.02562 * 7 6 5 40 40 H 1.09006 * 109.47576 * 59.99647 * 7 6 5 41 41 H 1.09002 * 109.46693 * 64.99882 * 10 8 2 42 42 H 1.09003 * 109.46666 * 305.00541 * 10 8 2 43 43 H 0.97004 * 120.00322 * 0.02562 * 13 11 10 44 44 H 1.08993 * 113.25817 * 22.05270 * 14 13 11 45 45 H 1.08998 * 113.47921 * 332.86187 * 15 14 13 46 46 H 1.08996 * 113.52556 * 202.39552 * 15 14 13 47 47 H 1.09004 * 109.47131 * 49.99918 * 17 16 15 48 48 H 1.08994 * 109.47471 * 289.99668 * 17 16 15 49 49 H 0.97000 * 119.99715 * 359.97438 * 20 18 17 50 50 H 0.96991 * 119.99827 * 179.97438 * 24 23 21 51 51 H 1.08995 * 113.47997 * 87.75390 * 29 16 15 52 52 H 1.09002 * 113.47897 * 218.22785 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5299 -2.1637 -1.2494 6 6 2.0399 -2.8850 -0.0001 7 6 1.5299 -2.1638 1.2491 8 6 2.0399 -0.7213 1.2492 9 1 3.1300 -0.7217 1.2489 10 6 1.5300 -0.0001 2.4985 11 6 2.1309 -0.6354 3.7258 12 8 2.8918 -1.5731 3.6124 13 7 1.8229 -0.1616 4.9493 14 6 2.4066 -0.7796 6.1424 15 6 2.4875 0.1542 7.3583 16 7 1.1206 -0.2735 7.7103 17 6 0.9920 -0.4860 9.1581 18 6 -0.4605 -0.6796 9.5103 19 8 -1.3053 -0.6445 8.6408 20 7 -0.8207 -0.8918 10.7917 21 6 -2.1419 -1.0684 11.1120 22 1 -2.8941 -1.0380 10.3376 23 6 -2.5127 -1.2929 12.4322 24 7 -1.5974 -1.3305 13.3745 25 14 -4.3122 -1.5413 12.8676 26 1 -5.1364 -1.4528 11.6356 27 1 -4.4912 -2.8783 13.4885 28 1 -4.7396 -0.4897 13.8250 29 6 1.3980 -1.5427 7.0125 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6766 -0.2074 -2.1392 34 1 3.1299 -0.7209 -1.2496 35 1 0.4398 -2.1637 -1.2493 36 1 1.8935 -2.6777 -2.1391 37 1 1.6762 -3.9126 0.0001 38 1 3.1299 -2.8851 -0.0001 39 1 1.8937 -2.6774 2.1391 40 1 0.4399 -2.1638 1.2492 41 1 0.4437 -0.0770 2.5444 42 1 1.8184 1.0502 2.4548 43 1 1.2141 0.5881 5.0400 44 1 3.3271 -1.3261 5.9375 45 1 2.5574 1.2088 7.0919 46 1 3.2383 -0.1468 8.0888 47 1 1.3819 0.3826 9.6889 48 1 1.5571 -1.3721 9.4469 49 1 -0.1450 -0.9202 11.4871 50 1 -1.8563 -1.4868 14.2960 51 1 1.8582 -2.2973 7.6502 52 1 0.5447 -1.9262 6.4530 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732119645.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:59 Heat of formation + Delta-G solvation = -83.711551 kcal Electronic energy + Delta-G solvation = -29246.448316 eV Core-core repulsion = 25244.886192 eV Total energy + Delta-G solvation = -4001.562123 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.78423 -40.84336 -39.76936 -39.11388 -35.96112 -34.90858 -33.73288 -33.27655 -32.52989 -31.19357 -28.83372 -27.46069 -26.96296 -26.82224 -25.11956 -23.31541 -22.76482 -21.35857 -21.13165 -20.69548 -19.90817 -19.26310 -18.14967 -17.77284 -17.23542 -16.83346 -16.58057 -16.44950 -16.38504 -16.20695 -15.57892 -15.49278 -15.27614 -14.86701 -14.78148 -14.57168 -14.29979 -13.81242 -13.72137 -13.70661 -13.50847 -13.39148 -13.21102 -13.00532 -12.77244 -12.56119 -12.43706 -12.40471 -12.24044 -12.17522 -12.10926 -11.89062 -11.81822 -11.60137 -11.51112 -11.15312 -11.04839 -10.77867 -10.53587 -10.37699 -10.02000 -10.00957 -9.73260 -8.47620 -5.96110 1.35350 1.40362 1.54502 1.66960 2.05857 2.18686 2.28016 2.85159 3.18569 3.35033 3.53623 3.70697 3.76884 3.80047 3.82713 4.03979 4.15913 4.26469 4.29755 4.34021 4.40635 4.42727 4.48629 4.52690 4.52948 4.53780 4.59698 4.66887 4.73830 4.78912 4.79725 4.81871 4.88888 4.94336 5.05983 5.13219 5.23005 5.23765 5.30722 5.32456 5.36147 5.40111 5.44731 5.49956 5.57520 5.63014 5.73195 5.86392 6.06353 6.60357 6.61973 7.12848 7.31043 7.56576 8.13241 8.70031 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019810 B = 0.001862 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.113115 B =15036.429178 C =15756.247739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.083 4.083 3 H 0.080 0.920 4 C -0.113 4.113 5 C -0.119 4.119 6 C -0.116 4.116 7 C -0.121 4.121 8 C -0.058 4.058 9 H 0.062 0.938 10 C -0.135 4.135 11 C 0.512 3.488 12 O -0.575 6.575 13 N -0.700 5.700 14 C 0.127 3.873 15 C 0.000 4.000 16 N -0.468 5.468 17 C 0.021 3.979 18 C 0.441 3.559 19 O -0.620 6.620 20 N -0.577 5.577 21 C -0.332 4.332 22 H 0.076 0.924 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.992 3.008 26 H -0.275 1.275 27 H -0.271 1.271 28 H -0.270 1.270 29 C -0.015 4.015 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.105 0.895 42 H 0.118 0.882 43 H 0.414 0.586 44 H 0.112 0.888 45 H 0.105 0.895 46 H 0.105 0.895 47 H 0.113 0.887 48 H 0.083 0.917 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.085 0.915 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.973 4.173 -24.210 27.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.101 4.101 3 H 0.099 0.901 4 C -0.150 4.150 5 C -0.157 4.157 6 C -0.154 4.154 7 C -0.158 4.158 8 C -0.077 4.077 9 H 0.080 0.920 10 C -0.174 4.174 11 C 0.301 3.699 12 O -0.454 6.454 13 N -0.351 5.351 14 C 0.020 3.980 15 C -0.129 4.129 16 N -0.190 5.190 17 C -0.111 4.111 18 C 0.229 3.771 19 O -0.505 6.505 20 N -0.214 5.214 21 C -0.462 4.462 22 H 0.094 0.906 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.816 3.184 26 H -0.199 1.199 27 H -0.196 1.196 28 H -0.195 1.195 29 C -0.145 4.145 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.123 0.877 42 H 0.136 0.864 43 H 0.250 0.750 44 H 0.130 0.870 45 H 0.123 0.877 46 H 0.123 0.877 47 H 0.131 0.869 48 H 0.101 0.899 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.103 0.897 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.335 3.930 -24.812 27.560 hybrid contribution -0.333 -0.648 1.555 1.717 sum 11.002 3.282 -23.257 25.936 Atomic orbital electron populations 1.22012 0.94984 1.02022 1.02157 1.21116 0.96180 0.99251 0.93552 0.90117 1.21547 1.00415 0.95407 0.97631 1.21573 1.01022 0.95911 0.97161 1.21477 1.00274 0.98729 0.94892 1.21689 1.00123 0.95897 0.98113 1.20834 0.99800 0.94348 0.92759 0.91972 1.21869 1.02655 1.02028 0.90844 1.21305 0.80413 0.82862 0.85316 1.90648 1.37899 1.29796 1.87104 1.45632 1.48631 1.36252 1.04555 1.21839 0.96290 0.95108 0.84787 1.24334 0.90759 1.01992 0.95788 1.68779 1.25701 1.17578 1.06985 1.22401 0.92849 1.03652 0.92200 1.20847 0.91847 0.82026 0.82395 1.90485 1.54167 1.56915 1.48975 1.41958 1.08338 1.63771 1.07379 1.19667 0.84907 1.47942 0.93664 0.90588 1.26028 1.04072 0.96509 0.94738 1.69671 1.35031 1.49722 1.01718 0.84883 0.77108 0.78325 0.78092 1.19937 1.19617 1.19480 1.24423 0.98974 0.93625 0.97511 0.92173 0.92094 0.92655 0.90964 0.92298 0.91597 0.91754 0.92622 0.92856 0.92985 0.92245 0.87683 0.86382 0.74953 0.86983 0.87704 0.87746 0.86939 0.89883 0.77008 0.91323 0.89652 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.15 71.98 0.59 -1.22 16 2 C -0.08 -1.00 2.72 -10.79 -0.03 -1.03 16 3 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 4 C -0.11 -1.34 5.45 30.59 0.17 -1.18 16 5 C -0.12 -1.60 5.65 30.59 0.17 -1.42 16 6 C -0.12 -2.00 5.92 30.59 0.18 -1.82 16 7 C -0.12 -2.37 4.67 30.59 0.14 -2.23 16 8 C -0.06 -0.96 1.61 -10.79 -0.02 -0.97 16 9 H 0.06 1.21 7.96 -2.38 -0.02 1.19 16 10 C -0.13 -2.05 4.67 29.85 0.14 -1.91 16 11 C 0.51 11.35 7.55 87.66 0.66 12.01 16 12 O -0.57 -16.74 13.56 -3.03 -0.04 -16.78 16 13 N -0.70 -14.72 5.39 -441.70 -2.38 -17.10 16 14 C 0.13 2.84 4.60 45.45 0.21 3.05 16 15 C 0.00 0.00 7.45 83.58 0.62 0.63 16 16 N -0.47 -14.18 5.82 -932.46 -5.43 -19.60 16 17 C 0.02 0.69 5.30 85.56 0.45 1.14 16 18 C 0.44 21.20 7.85 87.66 0.69 21.89 16 19 O -0.62 -35.14 16.01 -3.07 -0.05 -35.18 16 20 N -0.58 -29.79 5.29 -306.97 -1.62 -31.42 16 21 C -0.33 -19.09 9.68 84.04 0.81 -18.28 16 22 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 23 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 24 N -0.92 -49.79 13.05 21.67 0.28 -49.50 16 25 Si 0.99 43.30 29.55 68.60 2.03 45.33 16 26 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 27 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 28 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 29 C -0.01 -0.43 7.52 83.58 0.63 0.20 16 30 H 0.06 0.67 6.54 -2.39 -0.02 0.65 16 31 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.05 0.74 4.81 -2.39 -0.01 0.73 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.07 0.87 6.43 -2.38 -0.02 0.85 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.05 1.34 5.95 -2.39 -0.01 1.33 16 40 H 0.06 1.13 6.43 -2.38 -0.02 1.11 16 41 H 0.11 1.47 6.71 -2.39 -0.02 1.46 16 42 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.41 7.73 8.76 -92.71 -0.81 6.92 16 44 H 0.11 2.50 7.45 -2.39 -0.02 2.49 16 45 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.10 1.64 7.91 -2.39 -0.02 1.62 16 47 H 0.11 3.20 8.08 -2.38 -0.02 3.18 16 48 H 0.08 2.40 7.30 -2.39 -0.02 2.38 16 49 H 0.40 19.29 7.90 -92.71 -0.73 18.56 16 50 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 51 H 0.09 2.24 7.42 -2.39 -0.02 2.22 16 52 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -73.30 400.80 -1.93 -75.23 By element: Atomic # 1 Polarization: 41.06 SS G_CDS: -0.61 Total: 40.46 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 5.89 Total: 8.57 kcal Atomic # 7 Polarization: -108.47 SS G_CDS: -9.15 Total: -117.62 kcal Atomic # 8 Polarization: -51.87 SS G_CDS: -0.09 Total: -51.96 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -73.30 -1.93 -75.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732119645.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.482 kcal (2) G-P(sol) polarization free energy of solvation -73.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds