Wall clock time and date at job start Tue Mar 31 2020 20:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.01535 * 2 1 4 4 C 1.53869 * 110.07532 * 121.41804 * 2 1 3 5 5 C 1.54268 * 106.60159 * 119.30838 * 4 2 1 6 6 C 1.55028 * 104.27762 * 23.51611 * 5 4 2 7 7 C 1.54268 * 110.03029 * 238.61075 * 2 1 3 8 8 H 1.08994 * 110.49053 * 335.86303 * 7 2 1 9 9 C 1.53001 * 110.48583 * 98.37730 * 7 2 1 10 10 C 1.50700 * 109.47171 * 183.15763 * 9 7 2 11 11 O 1.21282 * 119.99804 * 0.02562 * 10 9 7 12 12 N 1.34772 * 120.00214 * 179.97438 * 10 9 7 13 13 C 1.46501 * 119.99936 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.46993 * 179.97438 * 13 12 10 15 15 C 1.53935 * 113.73242 * 174.99933 * 14 13 12 16 16 N 1.47962 * 86.30001 * 138.02883 * 15 14 13 17 17 C 1.46897 * 111.00037 * 222.47236 * 16 15 14 18 18 C 1.50703 * 109.46834 * 169.99844 * 17 16 15 19 19 O 1.21290 * 120.00197 * 0.02562 * 18 17 16 20 20 N 1.34779 * 119.99632 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99806 * 179.97438 * 20 18 17 22 22 H 1.07999 * 120.00158 * 0.02562 * 21 20 18 23 23 C 1.38951 * 119.99945 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00134 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99772 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47265 * 90.00191 * 25 23 21 27 27 H 1.48503 * 109.46672 * 209.99798 * 25 23 21 28 28 H 1.48498 * 109.47368 * 329.99774 * 25 23 21 29 29 C 1.48187 * 90.67343 * 335.41160 * 16 15 14 30 30 H 1.09001 * 109.46897 * 181.39296 * 1 2 3 31 31 H 1.09003 * 109.46945 * 301.38920 * 1 2 3 32 32 H 1.09001 * 109.47411 * 61.38965 * 1 2 3 33 33 H 1.09008 * 110.03541 * 238.59075 * 4 2 1 34 34 H 1.08998 * 110.03753 * 359.97438 * 4 2 1 35 35 H 1.08998 * 110.49132 * 142.28861 * 5 4 2 36 36 H 1.09002 * 110.48813 * 264.80414 * 5 4 2 37 37 H 1.09000 * 110.87879 * 203.90289 * 6 5 4 38 38 H 1.09004 * 110.69994 * 80.49089 * 6 5 4 39 39 H 1.09004 * 109.47282 * 63.15885 * 9 7 2 40 40 H 1.08992 * 109.47158 * 303.15713 * 9 7 2 41 41 H 0.96996 * 120.00212 * 0.02562 * 12 10 9 42 42 H 1.09004 * 109.46847 * 60.00301 * 13 12 10 43 43 H 1.08992 * 109.47388 * 300.00254 * 13 12 10 44 44 H 1.09005 * 112.93265 * 43.43983 * 14 13 12 45 45 H 1.09002 * 113.76229 * 252.40280 * 15 14 13 46 46 H 1.09005 * 113.75703 * 23.65805 * 15 14 13 47 47 H 1.08999 * 109.47312 * 289.99731 * 17 16 15 48 48 H 1.08999 * 109.46989 * 50.00663 * 17 16 15 49 49 H 0.97000 * 120.00257 * 0.02562 * 20 18 17 50 50 H 0.96995 * 119.99804 * 179.97438 * 24 23 21 51 51 H 1.09005 * 113.65869 * 270.26633 * 29 16 15 52 52 H 1.09002 * 113.92722 * 138.95266 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0582 -0.7534 1.2333 5 6 2.8892 -1.9398 0.7026 6 6 3.3139 -1.5019 -0.7226 7 6 2.0584 -0.7549 -1.2373 8 1 1.3137 -1.4642 -1.5982 9 6 2.4380 0.2308 -2.3442 10 6 2.8771 -0.5322 -3.5673 11 8 2.8852 -1.7449 -3.5551 12 7 3.2599 0.1330 -4.6752 13 6 3.6873 -0.6088 -5.8640 14 6 4.0655 0.3769 -6.9715 15 6 4.6462 -0.2962 -8.2282 16 7 3.8159 0.6523 -9.0029 17 6 3.1681 -0.0200 -10.1371 18 6 2.1482 0.9033 -10.7524 19 8 1.9782 2.0123 -10.2917 20 7 1.4259 0.4969 -11.8152 21 6 0.4977 1.3366 -12.3746 22 1 0.3457 2.3238 -11.9640 23 6 -0.2474 0.9175 -13.4700 24 7 -0.0628 -0.2839 -13.9694 25 14 -1.5116 2.0619 -14.2327 26 1 -0.8668 2.8737 -15.2959 27 1 -2.6135 1.2597 -14.8221 28 1 -2.0595 2.9621 -13.1864 29 6 2.8809 0.7929 -7.8619 30 1 -0.3633 -1.0274 0.0250 31 1 -0.3633 0.5353 0.8773 32 1 -0.3634 0.4921 -0.9022 33 1 2.6877 -0.0948 1.8319 34 1 1.2246 -1.1190 1.8329 35 1 3.7658 -2.1024 1.3296 36 1 2.2801 -2.8427 0.6585 37 1 3.5305 -2.3688 -1.3469 38 1 4.1721 -0.8312 -0.6799 39 1 3.2538 0.8667 -2.0004 40 1 1.5751 0.8488 -2.5919 41 1 3.2531 1.1029 -4.6852 42 1 2.8719 -1.2454 -6.2077 43 1 4.5505 -1.2262 -5.6162 44 1 4.6597 1.2157 -6.6088 45 1 5.7184 -0.1441 -8.3522 46 1 4.3482 -1.3382 -8.3457 47 1 3.9194 -0.2801 -10.8827 48 1 2.6736 -0.9264 -9.7879 49 1 1.5621 -0.3899 -12.1838 50 1 -0.5833 -0.5766 -14.7338 51 1 2.0650 0.0701 -7.8734 52 1 2.5413 1.8146 -7.6920 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732127605.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:21 Heat of formation + Delta-G solvation = -65.300053 kcal Electronic energy + Delta-G solvation = -28605.212161 eV Core-core repulsion = 24604.448420 eV Total energy + Delta-G solvation = -4000.763741 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.43769 -39.83083 -38.45013 -37.69611 -34.86637 -33.89766 -32.12082 -31.48908 -31.33072 -30.66135 -27.74510 -26.30559 -25.97642 -25.03989 -24.38123 -22.48928 -21.11589 -20.55914 -19.80284 -19.48628 -19.18722 -17.89437 -17.13419 -16.51221 -16.20627 -15.76771 -15.71778 -15.28849 -15.08885 -14.83814 -14.68928 -14.40092 -14.02933 -13.81620 -13.63625 -13.58264 -13.35034 -13.10639 -12.94277 -12.50597 -12.49017 -12.19071 -12.05317 -11.73101 -11.49559 -11.38285 -11.28418 -11.20089 -11.07186 -11.02172 -10.90046 -10.80848 -10.69421 -10.63001 -10.60917 -10.40295 -10.22341 -9.88043 -9.51178 -9.21723 -8.66142 -8.23805 -7.97171 -6.42427 -3.83335 2.50797 2.98948 3.17092 3.25692 3.31346 3.88152 3.98558 4.18568 4.21286 4.26879 4.35189 4.41586 4.64522 4.70221 4.86328 4.92695 4.96644 4.99963 5.11512 5.12644 5.21789 5.22616 5.24767 5.30970 5.37716 5.38752 5.41815 5.50899 5.56235 5.58325 5.61166 5.68963 5.72944 5.75715 5.76038 5.83283 5.85122 5.86902 6.00458 6.04320 6.09296 6.20699 6.21907 6.25516 6.34450 6.60705 7.19459 7.33260 7.54259 8.04812 8.08006 8.60514 9.17048 9.53333 10.04947 10.75327 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016931 B = 0.001739 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.378628 B =16095.358162 C =17108.116295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.072 0.928 4 C -0.120 4.120 5 C -0.126 4.126 6 C -0.117 4.117 7 C -0.072 4.072 8 H 0.084 0.916 9 C -0.135 4.135 10 C 0.511 3.489 11 O -0.540 6.540 12 N -0.730 5.730 13 C 0.129 3.871 14 C -0.134 4.134 15 C 0.008 3.992 16 N -0.454 5.454 17 C 0.010 3.990 18 C 0.444 3.556 19 O -0.580 6.580 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.027 3.973 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.402 0.598 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.104 0.896 45 H 0.090 0.910 46 H 0.070 0.930 47 H 0.091 0.909 48 H 0.054 0.946 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.067 0.933 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.363 -2.591 26.861 27.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.090 0.910 4 C -0.158 4.158 5 C -0.163 4.163 6 C -0.155 4.155 7 C -0.091 4.091 8 H 0.102 0.898 9 C -0.175 4.175 10 C 0.297 3.703 11 O -0.416 6.416 12 N -0.382 5.382 13 C 0.005 3.995 14 C -0.153 4.153 15 C -0.121 4.121 16 N -0.176 5.176 17 C -0.122 4.122 18 C 0.229 3.771 19 O -0.464 6.464 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.195 1.195 29 C -0.102 4.102 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.236 0.764 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.122 0.878 45 H 0.108 0.892 46 H 0.088 0.912 47 H 0.109 0.891 48 H 0.072 0.928 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.085 0.915 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.433 -2.240 26.676 27.783 hybrid contribution -0.987 -0.312 -0.683 1.240 sum 6.446 -2.552 25.993 26.902 Atomic orbital electron populations 1.21898 0.94948 1.01891 1.01596 1.21818 0.95735 0.99347 0.94396 0.90982 1.22215 0.99384 0.97109 0.97100 1.22372 0.99369 0.98009 0.96580 1.22582 0.96688 1.00601 0.95618 1.21828 0.98254 0.96134 0.92834 0.89812 1.21773 1.02961 0.99222 0.93564 1.20726 0.76806 0.88409 0.84314 1.90691 1.53423 1.14068 1.83467 1.46062 1.68115 1.10542 1.13441 1.21413 0.99954 0.94151 0.84029 1.23333 0.99245 0.98954 0.93771 1.23958 1.00276 0.95982 0.91933 1.68446 1.13361 1.33120 1.02674 1.22460 0.97820 0.95974 0.95930 1.19688 0.84960 0.88697 0.83773 1.90512 1.70090 1.21694 1.64112 1.41875 1.34324 1.16874 1.27032 1.19694 1.13540 0.98705 1.10945 0.87948 1.25266 0.98941 0.96738 0.97017 1.69612 1.41922 1.17804 1.24950 0.85855 0.79671 0.79528 0.79209 1.20378 1.20927 1.19451 1.23894 0.93837 1.03094 0.89385 0.92558 0.92791 0.92621 0.92046 0.91831 0.91967 0.91752 0.90398 0.92082 0.88927 0.88853 0.76389 0.91356 0.91295 0.87764 0.89153 0.91153 0.89129 0.92816 0.77492 0.91867 0.91514 0.88838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 8.84 37.16 0.33 -0.59 16 2 C -0.09 -0.61 3.07 -89.50 -0.27 -0.88 16 3 H 0.07 0.42 7.84 -51.93 -0.41 0.01 16 4 C -0.12 -0.76 6.46 -25.62 -0.17 -0.92 16 5 C -0.13 -0.89 6.83 -25.00 -0.17 -1.06 16 6 C -0.12 -0.98 5.70 -24.66 -0.14 -1.12 16 7 C -0.07 -0.57 1.99 -88.96 -0.18 -0.74 16 8 H 0.08 0.82 7.67 -51.93 -0.40 0.42 16 9 C -0.14 -0.97 5.05 -27.88 -0.14 -1.11 16 10 C 0.51 5.24 7.63 -10.99 -0.08 5.16 16 11 O -0.54 -7.54 14.61 5.56 0.08 -7.46 16 12 N -0.73 -6.57 5.56 -60.29 -0.33 -6.90 16 13 C 0.13 1.31 5.53 -4.04 -0.02 1.29 16 14 C -0.13 -1.42 3.94 -89.68 -0.35 -1.78 16 15 C 0.01 0.10 7.53 -2.77 -0.02 0.07 16 16 N -0.45 -7.39 5.95 -238.78 -1.42 -8.81 16 17 C 0.01 0.18 5.31 -4.98 -0.03 0.16 16 18 C 0.44 10.56 7.59 -10.98 -0.08 10.47 16 19 O -0.58 -15.72 15.14 5.55 0.08 -15.64 16 20 N -0.56 -14.43 5.29 -10.96 -0.06 -14.48 16 21 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 22 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.64 13.05 55.50 0.72 -23.92 16 25 Si 0.93 21.13 29.55 -169.99 -5.02 16.10 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 29 C 0.03 0.39 6.33 -2.65 -0.02 0.38 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 34 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.81 7.17 -51.93 -0.37 0.44 16 38 H 0.06 0.47 8.00 -51.93 -0.42 0.06 16 39 H 0.09 0.50 8.06 -51.93 -0.42 0.08 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.40 2.72 8.47 -40.82 -0.35 2.37 16 42 H 0.07 0.81 7.84 -51.93 -0.41 0.40 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 47 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 48 H 0.05 0.87 7.69 -51.93 -0.40 0.47 16 49 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 50 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 51 H 0.07 1.02 7.53 -51.93 -0.39 0.63 16 52 H 0.09 1.52 8.10 -51.93 -0.42 1.10 16 LS Contribution 414.17 15.07 6.24 6.24 Total: -1.00 -33.28 414.17 -10.55 -43.83 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -9.26 Total: 9.75 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -1.59 Total: 1.28 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -1.09 Total: -54.11 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: 0.17 Total: -23.10 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.28 -10.55 -43.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732127605.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.468 kcal (2) G-P(sol) polarization free energy of solvation -33.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds