Wall clock time and date at job start Tue Mar 31 2020 20:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.01535 * 2 1 4 4 C 1.53869 * 110.07532 * 121.41804 * 2 1 3 5 5 C 1.54268 * 106.60159 * 119.30838 * 4 2 1 6 6 C 1.55028 * 104.27762 * 23.51611 * 5 4 2 7 7 C 1.54268 * 110.03029 * 238.61075 * 2 1 3 8 8 H 1.08994 * 110.49053 * 335.86303 * 7 2 1 9 9 C 1.53001 * 110.48583 * 98.37730 * 7 2 1 10 10 C 1.50700 * 109.47171 * 183.15763 * 9 7 2 11 11 O 1.21282 * 119.99804 * 0.02562 * 10 9 7 12 12 N 1.34772 * 120.00214 * 179.97438 * 10 9 7 13 13 C 1.46501 * 119.99936 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.46993 * 179.97438 * 13 12 10 15 15 C 1.53935 * 113.73242 * 174.99933 * 14 13 12 16 16 N 1.47962 * 86.30001 * 138.02883 * 15 14 13 17 17 C 1.46897 * 111.00037 * 222.47236 * 16 15 14 18 18 C 1.50703 * 109.46834 * 169.99844 * 17 16 15 19 19 O 1.21290 * 120.00197 * 0.02562 * 18 17 16 20 20 N 1.34779 * 119.99632 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99806 * 179.97438 * 20 18 17 22 22 H 1.07999 * 120.00158 * 0.02562 * 21 20 18 23 23 C 1.38951 * 119.99945 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00134 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99772 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47265 * 90.00191 * 25 23 21 27 27 H 1.48503 * 109.46672 * 209.99798 * 25 23 21 28 28 H 1.48498 * 109.47368 * 329.99774 * 25 23 21 29 29 C 1.48187 * 90.67343 * 335.41160 * 16 15 14 30 30 H 1.09001 * 109.46897 * 181.39296 * 1 2 3 31 31 H 1.09003 * 109.46945 * 301.38920 * 1 2 3 32 32 H 1.09001 * 109.47411 * 61.38965 * 1 2 3 33 33 H 1.09008 * 110.03541 * 238.59075 * 4 2 1 34 34 H 1.08998 * 110.03753 * 359.97438 * 4 2 1 35 35 H 1.08998 * 110.49132 * 142.28861 * 5 4 2 36 36 H 1.09002 * 110.48813 * 264.80414 * 5 4 2 37 37 H 1.09000 * 110.87879 * 203.90289 * 6 5 4 38 38 H 1.09004 * 110.69994 * 80.49089 * 6 5 4 39 39 H 1.09004 * 109.47282 * 63.15885 * 9 7 2 40 40 H 1.08992 * 109.47158 * 303.15713 * 9 7 2 41 41 H 0.96996 * 120.00212 * 0.02562 * 12 10 9 42 42 H 1.09004 * 109.46847 * 60.00301 * 13 12 10 43 43 H 1.08992 * 109.47388 * 300.00254 * 13 12 10 44 44 H 1.09005 * 112.93265 * 43.43983 * 14 13 12 45 45 H 1.09002 * 113.76229 * 252.40280 * 15 14 13 46 46 H 1.09005 * 113.75703 * 23.65805 * 15 14 13 47 47 H 1.08999 * 109.47312 * 289.99731 * 17 16 15 48 48 H 1.08999 * 109.46989 * 50.00663 * 17 16 15 49 49 H 0.97000 * 120.00257 * 0.02562 * 20 18 17 50 50 H 0.96995 * 119.99804 * 179.97438 * 24 23 21 51 51 H 1.09005 * 113.65869 * 270.26633 * 29 16 15 52 52 H 1.09002 * 113.92722 * 138.95266 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0582 -0.7534 1.2333 5 6 2.8892 -1.9398 0.7026 6 6 3.3139 -1.5019 -0.7226 7 6 2.0584 -0.7549 -1.2373 8 1 1.3137 -1.4642 -1.5982 9 6 2.4380 0.2308 -2.3442 10 6 2.8771 -0.5322 -3.5673 11 8 2.8852 -1.7449 -3.5551 12 7 3.2599 0.1330 -4.6752 13 6 3.6873 -0.6088 -5.8640 14 6 4.0655 0.3769 -6.9715 15 6 4.6462 -0.2962 -8.2282 16 7 3.8159 0.6523 -9.0029 17 6 3.1681 -0.0200 -10.1371 18 6 2.1482 0.9033 -10.7524 19 8 1.9782 2.0123 -10.2917 20 7 1.4259 0.4969 -11.8152 21 6 0.4977 1.3366 -12.3746 22 1 0.3457 2.3238 -11.9640 23 6 -0.2474 0.9175 -13.4700 24 7 -0.0628 -0.2839 -13.9694 25 14 -1.5116 2.0619 -14.2327 26 1 -0.8668 2.8737 -15.2959 27 1 -2.6135 1.2597 -14.8221 28 1 -2.0595 2.9621 -13.1864 29 6 2.8809 0.7929 -7.8619 30 1 -0.3633 -1.0274 0.0250 31 1 -0.3633 0.5353 0.8773 32 1 -0.3634 0.4921 -0.9022 33 1 2.6877 -0.0948 1.8319 34 1 1.2246 -1.1190 1.8329 35 1 3.7658 -2.1024 1.3296 36 1 2.2801 -2.8427 0.6585 37 1 3.5305 -2.3688 -1.3469 38 1 4.1721 -0.8312 -0.6799 39 1 3.2538 0.8667 -2.0004 40 1 1.5751 0.8488 -2.5919 41 1 3.2531 1.1029 -4.6852 42 1 2.8719 -1.2454 -6.2077 43 1 4.5505 -1.2262 -5.6162 44 1 4.6597 1.2157 -6.6088 45 1 5.7184 -0.1441 -8.3522 46 1 4.3482 -1.3382 -8.3457 47 1 3.9194 -0.2801 -10.8827 48 1 2.6736 -0.9264 -9.7879 49 1 1.5621 -0.3899 -12.1838 50 1 -0.5833 -0.5766 -14.7338 51 1 2.0650 0.0701 -7.8734 52 1 2.5413 1.8146 -7.6920 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732127605.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:17 Heat of formation + Delta-G solvation = -89.450348 kcal Electronic energy + Delta-G solvation = -28606.259397 eV Core-core repulsion = 24604.448420 eV Total energy + Delta-G solvation = -4001.810976 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.45459 -40.80200 -39.58916 -39.02359 -36.03605 -35.68515 -33.34646 -32.81924 -32.03384 -31.84156 -28.87028 -27.23172 -27.05890 -26.46781 -25.22904 -23.70010 -21.83144 -21.31594 -21.00426 -20.42171 -20.34486 -19.90308 -17.98939 -17.82934 -17.37069 -16.70279 -16.62035 -16.60876 -16.29501 -16.01469 -15.76795 -15.69517 -15.34393 -14.95284 -14.70896 -14.51632 -14.25737 -14.06108 -13.73990 -13.66020 -13.54905 -13.44717 -13.10094 -13.03830 -12.86569 -12.71990 -12.44901 -12.32820 -12.13903 -11.87997 -11.82095 -11.75861 -11.66502 -11.58465 -11.50742 -11.47132 -11.40118 -11.20026 -10.72051 -10.35009 -10.05571 -10.03799 -9.68766 -8.48628 -5.97669 1.36407 1.40044 1.52909 1.71854 2.02374 2.23313 2.27812 2.81539 3.17787 3.25937 3.45294 3.62209 3.68580 3.73058 3.80763 4.02801 4.18327 4.21137 4.29508 4.34050 4.39281 4.43434 4.45235 4.49044 4.51083 4.57932 4.63058 4.66499 4.71156 4.72797 4.79174 4.82672 4.87617 4.89476 4.97960 5.04697 5.14280 5.20712 5.24177 5.31491 5.35378 5.37371 5.38558 5.40733 5.52246 5.54494 5.63538 5.88763 6.06633 6.57597 6.61158 7.10252 7.32421 7.53303 8.08749 8.68803 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016931 B = 0.001739 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.378628 B =16095.358162 C =17108.116295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.087 0.913 4 C -0.119 4.119 5 C -0.126 4.126 6 C -0.117 4.117 7 C -0.072 4.072 8 H 0.057 0.943 9 C -0.129 4.129 10 C 0.506 3.494 11 O -0.582 6.582 12 N -0.722 5.722 13 C 0.135 3.865 14 C -0.103 4.103 15 C 0.014 3.986 16 N -0.482 5.482 17 C 0.023 3.977 18 C 0.440 3.560 19 O -0.618 6.618 20 N -0.575 5.575 21 C -0.334 4.334 22 H 0.079 0.921 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.270 1.270 27 H -0.270 1.270 28 H -0.273 1.273 29 C 0.019 3.981 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.119 0.881 40 H 0.109 0.891 41 H 0.415 0.585 42 H 0.050 0.950 43 H 0.075 0.925 44 H 0.122 0.878 45 H 0.111 0.889 46 H 0.083 0.917 47 H 0.108 0.892 48 H 0.073 0.927 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.055 0.945 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.144 -1.921 27.918 29.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 H 0.105 0.895 4 C -0.156 4.156 5 C -0.164 4.164 6 C -0.154 4.154 7 C -0.091 4.091 8 H 0.076 0.924 9 C -0.169 4.169 10 C 0.294 3.706 11 O -0.462 6.462 12 N -0.375 5.375 13 C 0.011 3.989 14 C -0.122 4.122 15 C -0.115 4.115 16 N -0.204 5.204 17 C -0.109 4.109 18 C 0.227 3.773 19 O -0.504 6.504 20 N -0.212 5.212 21 C -0.464 4.464 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.197 1.197 29 C -0.110 4.110 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.137 0.863 40 H 0.127 0.873 41 H 0.251 0.749 42 H 0.069 0.931 43 H 0.093 0.907 44 H 0.140 0.860 45 H 0.129 0.871 46 H 0.101 0.899 47 H 0.126 0.874 48 H 0.091 0.909 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.074 0.926 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.233 -1.568 27.732 28.971 hybrid contribution -1.198 -0.541 -0.995 1.649 sum 7.035 -2.109 26.737 27.728 Atomic orbital electron populations 1.21899 0.94960 1.01459 1.02032 1.21802 0.95694 0.99837 0.93477 0.89457 1.22219 0.99476 0.96797 0.97129 1.22374 0.99751 0.98152 0.96079 1.22534 0.97262 0.99795 0.95844 1.21783 0.97439 0.96059 0.93808 0.92407 1.21811 1.04400 0.98939 0.91724 1.21306 0.75992 0.88071 0.85187 1.90681 1.55267 1.16040 1.84237 1.46014 1.67429 1.11221 1.12792 1.21253 0.99530 0.93905 0.84236 1.23125 0.96801 0.99150 0.93162 1.24079 1.00730 0.95885 0.90800 1.68448 1.14140 1.35014 1.02830 1.22350 0.96667 0.94961 0.96933 1.20752 0.84898 0.88969 0.82672 1.90478 1.71220 1.23738 1.64924 1.41959 1.34614 1.16813 1.27816 1.19662 1.15629 0.98631 1.12435 0.90317 1.26063 1.00248 0.98248 0.96787 1.69674 1.42496 1.18780 1.25186 0.84915 0.77439 0.77705 0.78200 1.19580 1.19515 1.19744 1.23860 0.94846 1.01656 0.90635 0.93510 0.91799 0.92687 0.90868 0.91607 0.91156 0.92680 0.93193 0.91180 0.86337 0.87260 0.74864 0.93133 0.90687 0.86001 0.87111 0.89911 0.87354 0.90925 0.77078 0.91289 0.92632 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.84 71.98 0.64 -1.03 16 2 C -0.09 -1.00 3.07 -10.07 -0.03 -1.03 16 3 H 0.09 0.74 7.84 -2.39 -0.02 0.73 16 4 C -0.12 -1.30 6.46 31.32 0.20 -1.09 16 5 C -0.13 -1.71 6.83 31.72 0.22 -1.49 16 6 C -0.12 -1.90 5.70 31.94 0.18 -1.72 16 7 C -0.07 -1.09 1.99 -9.72 -0.02 -1.11 16 8 H 0.06 1.18 7.67 -2.39 -0.02 1.16 16 9 C -0.13 -1.62 5.05 29.85 0.15 -1.47 16 10 C 0.51 9.98 7.63 87.66 0.67 10.65 16 11 O -0.58 -16.53 14.61 -3.04 -0.04 -16.57 16 12 N -0.72 -11.93 5.56 -463.06 -2.57 -14.51 16 13 C 0.14 2.56 5.53 86.38 0.48 3.04 16 14 C -0.10 -1.99 3.94 -10.15 -0.04 -2.03 16 15 C 0.01 0.29 7.53 86.41 0.65 0.94 16 16 N -0.48 -15.13 5.95 -909.38 -5.41 -20.54 16 17 C 0.02 0.79 5.31 85.56 0.45 1.24 16 18 C 0.44 21.28 7.59 87.66 0.67 21.95 16 19 O -0.62 -34.43 15.14 -3.06 -0.05 -34.48 16 20 N -0.57 -29.99 5.29 -306.98 -1.62 -31.62 16 21 C -0.33 -19.20 9.68 84.04 0.81 -18.38 16 22 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 23 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 24 N -0.92 -50.14 13.05 21.66 0.28 -49.86 16 25 Si 0.99 43.24 29.55 68.60 2.03 45.26 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 27 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 28 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 29 C 0.02 0.55 6.33 86.36 0.55 1.10 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.07 0.70 7.67 -2.39 -0.02 0.68 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.05 1.09 7.17 -2.39 -0.02 1.08 16 38 H 0.07 0.99 8.00 -2.39 -0.02 0.97 16 39 H 0.12 0.91 8.06 -2.39 -0.02 0.89 16 40 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.41 4.72 8.47 -92.71 -0.79 3.93 16 42 H 0.05 1.17 7.84 -2.39 -0.02 1.15 16 43 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.12 1.99 8.14 -2.38 -0.02 1.97 16 45 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.08 1.56 7.75 -2.38 -0.02 1.54 16 47 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 48 H 0.07 2.26 7.69 -2.39 -0.02 2.25 16 49 H 0.40 19.65 7.90 -92.71 -0.73 18.91 16 50 H 0.28 14.15 8.31 -92.71 -0.77 13.37 16 51 H 0.06 1.73 7.53 -2.38 -0.02 1.71 16 52 H 0.07 2.38 8.10 -2.39 -0.02 2.36 16 Total: -1.00 -74.17 414.17 -1.95 -76.12 By element: Atomic # 1 Polarization: 37.52 SS G_CDS: -0.61 Total: 36.92 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 6.04 Total: 9.28 kcal Atomic # 7 Polarization: -107.20 SS G_CDS: -9.33 Total: -116.52 kcal Atomic # 8 Polarization: -50.96 SS G_CDS: -0.09 Total: -51.05 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -74.17 -1.95 -76.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732127605.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.332 kcal (2) G-P(sol) polarization free energy of solvation -74.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds