Wall clock time and date at job start Tue Mar 31 2020 20:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 110.01948 * 2 1 4 4 C 1.54265 * 110.03719 * 238.60495 * 2 1 3 5 5 C 1.54888 * 104.19723 * 217.10622 * 4 2 1 6 6 C 1.54891 * 102.74813 * 37.94296 * 5 4 2 7 7 C 1.53877 * 110.03262 * 121.43513 * 2 1 3 8 8 H 1.08994 * 110.03664 * 238.56818 * 7 2 1 9 9 C 1.52998 * 110.03131 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.47077 * 185.00138 * 9 7 2 11 11 O 1.21285 * 120.00012 * 359.97438 * 10 9 7 12 12 N 1.34779 * 119.99825 * 179.97438 * 10 9 7 13 13 C 1.46504 * 119.99818 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47070 * 180.02562 * 13 12 10 15 15 C 1.53936 * 113.72909 * 271.72376 * 14 13 12 16 16 N 1.47964 * 86.17952 * 221.91974 * 15 14 13 17 17 C 1.46906 * 110.99639 * 137.58433 * 16 15 14 18 18 C 1.50696 * 109.47230 * 70.64359 * 17 16 15 19 19 O 1.21286 * 120.00199 * 359.97438 * 18 17 16 20 20 N 1.34776 * 119.99675 * 180.02562 * 18 17 16 21 21 C 1.37098 * 119.99766 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00252 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99708 * 179.97438 * 21 20 18 24 24 N 1.31404 * 120.00345 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99649 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47602 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47198 * 120.00382 * 25 23 21 28 28 H 1.48503 * 109.47211 * 239.99948 * 25 23 21 29 29 C 1.47962 * 90.75999 * 24.69211 * 16 15 14 30 30 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46832 * 59.94245 * 1 2 3 32 32 H 1.09004 * 109.47261 * 299.94226 * 1 2 3 33 33 H 1.09003 * 110.48271 * 335.78444 * 4 2 1 34 34 H 1.08997 * 110.48782 * 98.42711 * 4 2 1 35 35 H 1.09001 * 110.75242 * 156.25502 * 5 4 2 36 36 H 1.09003 * 110.75664 * 279.62342 * 5 4 2 37 37 H 1.08998 * 110.48846 * 80.73361 * 6 5 4 38 38 H 1.09000 * 110.48165 * 203.38259 * 6 5 4 39 39 H 1.09000 * 109.46971 * 304.99238 * 9 7 2 40 40 H 1.08999 * 109.47481 * 64.99440 * 9 7 2 41 41 H 0.96993 * 120.00252 * 359.97438 * 12 10 9 42 42 H 1.09000 * 109.46545 * 299.99545 * 13 12 10 43 43 H 1.08999 * 109.47482 * 59.99486 * 13 12 10 44 44 H 1.09000 * 112.94012 * 43.42452 * 14 13 12 45 45 H 1.08997 * 113.76101 * 336.23618 * 15 14 13 46 46 H 1.08999 * 113.76174 * 107.60475 * 15 14 13 47 47 H 1.09003 * 109.46404 * 190.64157 * 17 16 15 48 48 H 1.08998 * 109.46962 * 310.63324 * 17 16 15 49 49 H 0.97003 * 120.00569 * 359.97438 * 20 18 17 50 50 H 0.97002 * 120.00097 * 179.97438 * 24 23 21 51 51 H 1.08998 * 113.75168 * 220.99163 * 29 16 15 52 52 H 1.08995 * 113.76116 * 89.63142 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0242 0.0000 4 6 2.0585 -0.7550 -1.2371 5 6 3.3137 -1.5004 -0.7196 6 6 2.8874 -1.9409 0.7029 7 6 2.0571 -0.7540 1.2335 8 1 2.6867 -0.0961 1.8324 9 6 0.8862 -1.2681 2.0734 10 6 1.4127 -1.8960 3.3381 11 8 2.6070 -1.9294 3.5469 12 7 0.5564 -2.4204 4.2372 13 6 1.0683 -3.0313 5.4665 14 6 -0.1026 -3.5453 6.3064 15 6 -0.6830 -2.4937 7.2692 16 7 -0.7517 -3.5868 8.2641 17 6 -0.3077 -3.1242 9.5858 18 6 -1.3361 -2.1847 10.1609 19 8 -2.3399 -1.9256 9.5315 20 7 -1.1398 -1.6317 11.3742 21 6 -2.0752 -0.7766 11.8971 22 1 -2.9691 -0.5458 11.3367 23 6 -1.8731 -0.2068 13.1482 24 7 -0.7857 -0.4880 13.8304 25 14 -3.1472 0.9588 13.8604 26 1 -4.2716 1.1088 12.9020 27 1 -3.6593 0.4096 15.1416 28 1 -2.5239 2.2845 14.1043 29 6 0.3302 -4.3162 7.5665 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5147 -0.8895 32 1 -0.3634 0.5130 0.8905 33 1 1.3143 -1.4654 -1.5972 34 1 2.3298 -0.0528 -2.0254 35 1 3.5326 -2.3673 -1.3431 36 1 4.1711 -0.8287 -0.6753 37 1 2.2771 -2.8428 0.6561 38 1 3.7637 -2.1041 1.3302 39 1 0.2284 -0.4368 2.3271 40 1 0.3288 -2.0114 1.5033 41 1 -0.3987 -2.3933 4.0704 42 1 1.7254 -3.8630 5.2124 43 1 1.6263 -2.2884 6.0364 44 1 -0.8565 -4.0626 5.7129 45 1 0.0203 -1.7038 7.5325 46 1 -1.6587 -2.1129 6.9672 47 1 -0.1871 -3.9809 10.2489 48 1 0.6451 -2.6040 9.4875 49 1 -0.3368 -1.8386 11.8774 50 1 -0.6445 -0.0900 14.7036 51 1 0.1641 -5.3916 7.5021 52 1 1.3299 -4.0594 7.9168 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732127608.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:41 Heat of formation + Delta-G solvation = -83.946824 kcal Electronic energy + Delta-G solvation = -28741.256566 eV Core-core repulsion = 24739.684240 eV Total energy + Delta-G solvation = -4001.572326 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.48605 -40.89922 -39.61775 -39.08172 -36.03791 -35.68764 -33.35023 -32.96711 -32.08043 -31.59537 -28.86768 -27.12043 -27.04666 -26.22762 -25.65755 -23.76403 -21.84384 -21.54158 -21.02470 -20.57853 -19.91414 -19.40632 -18.29809 -17.85829 -17.31091 -16.87566 -16.67209 -16.57217 -16.38608 -16.09758 -15.74479 -15.59979 -15.35241 -14.97340 -14.63633 -14.57548 -14.38505 -14.09061 -13.71119 -13.55598 -13.47516 -13.36379 -13.11275 -13.08223 -12.86960 -12.76694 -12.43985 -12.32091 -12.13202 -11.83567 -11.78301 -11.66248 -11.64075 -11.56069 -11.51725 -11.48527 -11.40501 -11.13027 -10.74182 -10.35162 -10.05553 -10.03855 -9.68890 -8.48905 -5.97856 1.34845 1.40068 1.54392 1.71920 2.02210 2.23794 2.27810 2.81604 3.17550 3.26297 3.45311 3.62659 3.68883 3.71092 3.79199 4.02599 4.18480 4.21456 4.29510 4.33241 4.39770 4.44406 4.45458 4.48991 4.51053 4.56012 4.63249 4.66249 4.70677 4.74808 4.77374 4.86660 4.89170 4.90171 4.96208 5.08434 5.12266 5.17391 5.24513 5.30979 5.37690 5.40777 5.43378 5.44347 5.51488 5.54223 5.61667 5.88724 6.06554 6.57445 6.61294 7.10248 7.32540 7.53235 8.08643 8.68776 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017987 B = 0.001744 C = 0.001662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.305791 B =16049.068007 C =16842.891434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 H 0.068 0.932 4 C -0.116 4.116 5 C -0.127 4.127 6 C -0.112 4.112 7 C -0.072 4.072 8 H 0.054 0.946 9 C -0.130 4.130 10 C 0.504 3.496 11 O -0.583 6.583 12 N -0.722 5.722 13 C 0.135 3.865 14 C -0.103 4.103 15 C 0.019 3.981 16 N -0.481 5.481 17 C 0.022 3.978 18 C 0.440 3.560 19 O -0.617 6.617 20 N -0.575 5.575 21 C -0.333 4.333 22 H 0.079 0.921 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.271 1.271 29 C 0.014 3.986 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.045 0.955 39 H 0.113 0.887 40 H 0.119 0.881 41 H 0.415 0.585 42 H 0.074 0.926 43 H 0.050 0.950 44 H 0.122 0.878 45 H 0.056 0.944 46 H 0.071 0.929 47 H 0.108 0.892 48 H 0.073 0.927 49 H 0.395 0.605 50 H 0.278 0.722 51 H 0.111 0.889 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.527 -4.521 -28.070 29.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.154 4.154 5 C -0.165 4.165 6 C -0.150 4.150 7 C -0.092 4.092 8 H 0.072 0.928 9 C -0.169 4.169 10 C 0.292 3.708 11 O -0.463 6.463 12 N -0.374 5.374 13 C 0.011 3.989 14 C -0.122 4.122 15 C -0.110 4.110 16 N -0.204 5.204 17 C -0.109 4.109 18 C 0.227 3.773 19 O -0.503 6.503 20 N -0.212 5.212 21 C -0.463 4.463 22 H 0.097 0.903 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.198 1.198 27 H -0.195 1.195 28 H -0.196 1.196 29 C -0.115 4.115 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.131 0.869 40 H 0.137 0.863 41 H 0.251 0.749 42 H 0.093 0.907 43 H 0.069 0.931 44 H 0.140 0.860 45 H 0.074 0.926 46 H 0.090 0.910 47 H 0.126 0.874 48 H 0.091 0.909 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.129 0.871 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.137 -4.637 -27.967 29.005 hybrid contribution 0.391 1.050 1.255 1.682 sum 6.528 -3.588 -26.711 27.731 Atomic orbital electron populations 1.22028 0.93922 1.02606 1.02108 1.21784 0.96684 0.98922 0.93669 0.91344 1.22446 0.97024 0.99025 0.96891 1.22518 0.98045 1.00116 0.95796 1.22335 0.99214 0.97437 0.95976 1.21518 0.95202 0.96848 0.95588 0.92783 1.22043 0.99877 1.02586 0.92439 1.21420 0.86198 0.77385 0.85804 1.90682 1.17635 1.59202 1.78809 1.46014 1.11069 1.60023 1.20343 1.21253 0.95515 0.97308 0.84863 1.23132 0.97576 0.96491 0.95043 1.23827 1.00764 0.93909 0.92506 1.68409 1.37449 1.15135 0.99404 1.22354 0.95352 0.98583 0.94652 1.20747 0.89171 0.84833 0.82510 1.90477 1.32188 1.66023 1.61654 1.41965 1.21537 1.41321 1.16410 1.19699 1.02271 1.22717 1.01583 0.90319 1.26061 0.99474 0.99708 0.96121 1.69677 1.27129 1.45111 1.14249 0.84859 0.77694 0.77687 0.78014 1.19751 1.19543 1.19592 1.24085 0.94448 1.01093 0.91866 0.91364 0.92334 0.92080 0.90702 0.91217 0.91044 0.92115 0.91819 0.93567 0.86927 0.86347 0.74877 0.90734 0.93133 0.86005 0.92617 0.91003 0.87362 0.90916 0.77079 0.91292 0.87093 0.89900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 7.87 71.98 0.57 -0.68 16 2 C -0.09 -1.05 3.50 -10.07 -0.04 -1.09 16 3 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 4 C -0.12 -1.21 6.36 31.67 0.20 -1.01 16 5 C -0.13 -1.65 6.91 31.89 0.22 -1.43 16 6 C -0.11 -1.86 5.43 31.67 0.17 -1.69 16 7 C -0.07 -1.12 2.55 -10.07 -0.03 -1.15 16 8 H 0.05 1.11 7.92 -2.39 -0.02 1.09 16 9 C -0.13 -1.67 3.87 29.85 0.12 -1.55 16 10 C 0.50 10.04 7.61 87.66 0.67 10.71 16 11 O -0.58 -16.70 14.83 -3.05 -0.05 -16.75 16 12 N -0.72 -12.04 5.56 -463.05 -2.57 -14.61 16 13 C 0.14 2.58 5.53 86.38 0.48 3.06 16 14 C -0.10 -2.00 3.94 -10.15 -0.04 -2.04 16 15 C 0.02 0.55 6.31 86.41 0.55 1.10 16 16 N -0.48 -15.11 5.95 -912.38 -5.43 -20.54 16 17 C 0.02 0.78 5.31 85.55 0.45 1.23 16 18 C 0.44 21.29 7.59 87.66 0.67 21.95 16 19 O -0.62 -34.42 15.12 -3.05 -0.05 -34.46 16 20 N -0.57 -30.00 5.29 -306.99 -1.62 -31.63 16 21 C -0.33 -19.15 9.68 84.04 0.81 -18.34 16 22 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 23 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 24 N -0.92 -50.16 13.05 21.66 0.28 -49.88 16 25 Si 0.99 43.25 29.55 68.60 2.03 45.28 16 26 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 29 C 0.01 0.29 7.54 86.40 0.65 0.94 16 30 H 0.07 0.45 6.79 -2.39 -0.02 0.44 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.49 6.70 -2.38 -0.02 0.48 16 33 H 0.07 0.66 7.85 -2.39 -0.02 0.65 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 37 H 0.06 0.99 7.76 -2.39 -0.02 0.97 16 38 H 0.05 1.01 7.66 -2.39 -0.02 0.99 16 39 H 0.11 1.12 6.46 -2.39 -0.02 1.11 16 40 H 0.12 0.98 6.87 -2.39 -0.02 0.96 16 41 H 0.41 4.76 8.47 -92.71 -0.79 3.98 16 42 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.05 1.17 7.84 -2.39 -0.02 1.16 16 44 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.06 1.73 7.53 -2.39 -0.02 1.71 16 46 H 0.07 2.38 8.09 -2.39 -0.02 2.36 16 47 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 48 H 0.07 2.27 7.69 -2.39 -0.02 2.25 16 49 H 0.40 19.64 7.90 -92.71 -0.73 18.91 16 50 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 51 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 52 H 0.08 1.57 7.75 -2.39 -0.02 1.55 16 Total: -1.00 -74.29 408.19 -2.08 -76.37 By element: Atomic # 1 Polarization: 37.08 SS G_CDS: -0.59 Total: 36.49 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 5.92 Total: 9.73 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -9.34 Total: -116.65 kcal Atomic # 8 Polarization: -51.12 SS G_CDS: -0.09 Total: -51.21 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -74.29 -2.08 -76.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732127608.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.574 kcal (2) G-P(sol) polarization free energy of solvation -74.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds